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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Feb 4;65(Pt 3):o448. doi: 10.1107/S1600536809003699

3-[(Methyl­carbamo­yl)amino]-1H-isoindolium chloride

Bushra Maliha a, Muhammad Ilyas Tariq b, M Nawaz Tahir c,*, Ishtiaq Hussain d, Hamid Latif Siddiqui a
PMCID: PMC2968434  PMID: 21582121

Abstract

The title compound, C10H12N3O+·Cl, is a derivative of o-phthaldehyde and methyl­thio­urea. The mol­ecules form dimers through intra- and inter­molecular N—H⋯O hydrogen bonds. The dimers are further linked into chains through one C—H⋯Cl and two N—H⋯Cl hydrogen bonds.

Related literature

For applications of iminium salts, see: Page et al. (2008); Skalkos et al. (1994) Tariq et al. (2008). For the formation of derivatives of o-phthaldehyde with different ureas, see: Maliha, Tariq, Tahir, Hussain & Ali (2009); Maliha, Tariq, Tahir, Hussain & Siddiqui (2009); Maliha et al. (2008). For a related structure, see: Arfan et al. (2008).graphic file with name e-65-0o448-scheme1.jpg

Experimental

Crystal data

  • C10H12N3O+·Cl

  • M r = 225.68

  • Triclinic, Inline graphic

  • a = 7.1171 (5) Å

  • b = 7.7900 (6) Å

  • c = 10.3033 (8) Å

  • α = 89.484 (3)°

  • β = 69.997 (2)°

  • γ = 74.613 (4)°

  • V = 515.43 (7) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.35 mm−1

  • T = 296 (2) K

  • 0.30 × 0.10 × 0.06 mm

Data collection

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.982, T max = 0.989

  • 8853 measured reflections

  • 2369 independent reflections

  • 2210 reflections with I > 2σ(I)

  • R int = 0.020

Refinement

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.101

  • S = 1.01

  • 2369 reflections

  • 146 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.69 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003699/ez2156sup1.cif

e-65-0o448-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003699/ez2156Isup2.hkl

e-65-0o448-Isup2.hkl (114KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯O1 0.81 (2) 2.22 (2) 2.7097 (16) 119.9 (18)
N1—H1N⋯O1i 0.81 (2) 2.15 (2) 2.8760 (17) 150 (2)
N2—H2N⋯Cl1ii 0.90 (2) 2.23 (2) 3.0969 (13) 160.5 (18)
N3—H3N⋯Cl1ii 0.86 (2) 2.40 (2) 3.2082 (13) 157.0 (17)
C1—H1B⋯Cl1iii 0.97 2.74 3.6755 (16) 162

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors acknowledge the Higher Education Commission, Islamabad, and the University of the Punjab, Lahore, Pakistan, for funding the research.

supplementary crystallographic information

Comment

Iminium salts are a class of organic compounds acting as reactive intermediates. These are being extensively synthesized and further reacted in an efficient and convenient manner for the preparation of multidrug-resistance reversal agents and pesticides and for metal complexation to form new photosensitizers (Page et al., 2008; Skalkos et al., 1994; Tariq et al., 2008). The present paper relates to the continuation of our studies regarding the formation of derivatives of O-phthaldehyde with different ureas (Maliha et al., 2008; Maliha, Tariq, Tahir, Hussain & Ali, 2009; Maliha, Tariq, Tahir, Hussain & Siddiqui, 2009).

The molecule of the title compound (I; Fig 1), is almost planar. It has three N—H bonds in the asymmetric unit. The N—H of the pyrrole ring forms an intramolecular as well as an intermolecular N–H···O H-bond. The title compound forms a dimer (Fig 2) with a central four membered O···H···O···H unit. The other two N–H groups in the methyl urea moiety are involved in intermolecular H-bonding with the Cl-. The Cl- also forms H-bonds with the methylene group of the pyrrole ring. Consequently, the chlorine anion makes three H-bonds. Similar Cl- bonding behavior has been reported by Arfan et al. (2008). No strong π interactions are observed.

Experimental

O-phthaldehyde (200 mmol), methylthiourea (200 mmol) and a few drops of 2M HCl were mixed and ground in mortar and pestle. The product obtained was washed sequentially with hexane, ether, ethanol and water. The precipitate was dried and recrystallized from a mixture of methanol:acetone (9:1), by slow evaporation at room temperature.

Figures

Fig. 1.

Fig. 1.

The title compound (I) with displacement ellipsoids drawn at 50% probability level. Intramolecular H-bonds are indicated by broken lines.

Fig. 2.

Fig. 2.

The packing of I (PLATON: Spek, 2003) showing the dimers and H-bonds to the chlorine anion. H-bonds are indicated by broken lines.

Crystal data

C10H12N3O+·Cl Z = 2
Mr = 225.68 F(000) = 236
Triclinic, P1 Dx = 1.454 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.1171 (5) Å Cell parameters from 2369 reflections
b = 7.7900 (6) Å θ = 3.1–27.5°
c = 10.3033 (8) Å µ = 0.35 mm1
α = 89.484 (3)° T = 296 K
β = 69.997 (2)° Needle, light yellow
γ = 74.613 (4)° 0.30 × 0.10 × 0.06 mm
V = 515.43 (7) Å3

Data collection

Bruker Kappa APEXII CCD diffractometer 2369 independent reflections
Radiation source: fine-focus sealed tube 2210 reflections with I > 2σ(I)
graphite Rint = 0.020
Detector resolution: 7.50 pixels mm-1 θmax = 27.5°, θmin = 3.1°
ω scans h = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2005) k = −10→10
Tmin = 0.982, Tmax = 0.989 l = −13→13
8853 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: mixed
wR(F2) = 0.101 H atoms treated by a mixture of independent and constrained refinement
S = 1.00 w = 1/[σ2(Fo2) + (0.0646P)2 + 0.2853P] where P = (Fo2 + 2Fc2)/3
2369 reflections (Δ/σ)max < 0.001
146 parameters Δρmax = 0.69 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.29475 (16) 0.09740 (13) 0.60677 (11) 0.0195 (3)
N1 0.46180 (18) 0.25619 (17) 0.37719 (12) 0.0161 (3)
N2 0.19866 (18) 0.40058 (16) 0.58681 (12) 0.0155 (3)
N3 0.05849 (19) 0.28726 (17) 0.79177 (13) 0.0177 (3)
C1 0.5740 (2) 0.29979 (19) 0.23859 (15) 0.0175 (4)
C2 0.4836 (2) 0.49861 (19) 0.24873 (15) 0.0165 (4)
C3 0.5278 (2) 0.6215 (2) 0.15233 (15) 0.0201 (4)
C4 0.4209 (2) 0.8007 (2) 0.19298 (17) 0.0222 (4)
C5 0.2750 (2) 0.8576 (2) 0.32626 (17) 0.0214 (4)
C6 0.2298 (2) 0.73562 (19) 0.42329 (15) 0.0183 (4)
C7 0.3359 (2) 0.55629 (19) 0.38103 (14) 0.0149 (4)
C8 0.3263 (2) 0.39698 (18) 0.45638 (14) 0.0147 (3)
C9 0.1900 (2) 0.24711 (19) 0.66151 (14) 0.0155 (3)
C10 0.0312 (3) 0.1475 (2) 0.88541 (15) 0.0218 (4)
Cl1 0.11104 (5) 0.28646 (4) 0.19897 (3) 0.0186 (1)
H1A 0.54729 0.23997 0.16735 0.0210*
H1B 0.72287 0.26795 0.21941 0.0210*
H1N 0.487 (3) 0.156 (3) 0.401 (2) 0.0194*
H2N 0.113 (3) 0.507 (3) 0.631 (2) 0.0186*
H3 0.62547 0.58510 0.06360 0.0242*
H3N −0.007 (3) 0.397 (3) 0.819 (2) 0.0212*
H4 0.44729 0.88501 0.12976 0.0266*
H5 0.20729 0.97864 0.35036 0.0256*
H6 0.13317 0.77212 0.51234 0.0220*
H10A 0.01212 0.04982 0.83996 0.0327*
H10B −0.08889 0.19448 0.96722 0.0327*
H10C 0.15238 0.10608 0.91081 0.0327*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0212 (5) 0.0138 (5) 0.0177 (5) −0.0003 (4) −0.0033 (4) 0.0024 (4)
N1 0.0167 (5) 0.0144 (6) 0.0145 (6) −0.0019 (4) −0.0039 (4) 0.0029 (4)
N2 0.0166 (5) 0.0126 (6) 0.0143 (6) −0.0020 (4) −0.0032 (4) 0.0016 (4)
N3 0.0208 (6) 0.0145 (6) 0.0145 (6) −0.0031 (5) −0.0036 (5) 0.0021 (4)
C1 0.0162 (6) 0.0182 (7) 0.0149 (6) −0.0030 (5) −0.0029 (5) 0.0021 (5)
C2 0.0146 (6) 0.0192 (7) 0.0165 (7) −0.0058 (5) −0.0057 (5) 0.0024 (5)
C3 0.0193 (7) 0.0251 (8) 0.0169 (7) −0.0097 (6) −0.0049 (5) 0.0049 (6)
C4 0.0251 (7) 0.0221 (8) 0.0249 (7) −0.0130 (6) −0.0111 (6) 0.0101 (6)
C5 0.0245 (7) 0.0158 (7) 0.0264 (8) −0.0074 (6) −0.0109 (6) 0.0047 (6)
C6 0.0181 (6) 0.0176 (7) 0.0200 (7) −0.0053 (5) −0.0074 (5) 0.0016 (5)
C7 0.0142 (6) 0.0160 (6) 0.0164 (7) −0.0055 (5) −0.0067 (5) 0.0037 (5)
C8 0.0140 (6) 0.0156 (6) 0.0158 (6) −0.0040 (5) −0.0071 (5) 0.0018 (5)
C9 0.0160 (6) 0.0156 (6) 0.0155 (6) −0.0048 (5) −0.0062 (5) 0.0033 (5)
C10 0.0280 (7) 0.0197 (7) 0.0156 (7) −0.0068 (6) −0.0050 (6) 0.0060 (5)
Cl1 0.0195 (2) 0.0144 (2) 0.0192 (2) −0.0041 (1) −0.0040 (1) 0.0002 (1)

Geometric parameters (Å, °)

O1—C9 1.2234 (17) C4—C5 1.397 (2)
N1—C1 1.4654 (19) C5—C6 1.390 (2)
N1—C8 1.3096 (19) C6—C7 1.392 (2)
N2—C8 1.3356 (18) C7—C8 1.463 (2)
N2—C9 1.4197 (19) C1—H1A 0.9700
N3—C9 1.3296 (19) C1—H1B 0.9700
N3—C10 1.456 (2) C3—H3 0.9300
N1—H1N 0.81 (2) C4—H4 0.9300
N2—H2N 0.90 (2) C5—H5 0.9300
N3—H3N 0.86 (2) C6—H6 0.9300
C1—C2 1.501 (2) C10—H10A 0.9600
C2—C3 1.390 (2) C10—H10B 0.9600
C2—C7 1.395 (2) C10—H10C 0.9600
C3—C4 1.390 (2)
Cl1···C1 3.4838 (16) C8···C7vii 3.457 (2)
Cl1···C2 3.6463 (16) C9···C3vii 3.539 (2)
Cl1···C5i 3.6252 (16) C9···C6ii 3.358 (2)
Cl1···N2ii 3.0969 (13) C9···C4vii 3.513 (2)
Cl1···N3ii 3.2082 (13) C9···C5ii 3.575 (2)
Cl1···H5i 2.9100 C10···C4ii 3.500 (3)
Cl1···H1A 2.9300 C10···C5ii 3.579 (3)
Cl1···H1Biii 2.7400 C10···C10ix 3.283 (2)
Cl1···H2Nii 2.23 (2) C1···H10Bx 2.9400
Cl1···H3iv 3.0500 C5···H10Aii 3.0400
Cl1···H3Nii 2.40 (2) C6···H2N 2.82 (2)
Cl1···H6ii 2.9900 C9···H1N 2.75 (2)
Cl1···H10Av 3.0400 C10···H10Bix 3.0600
O1···O1vi 2.9982 (16) C10···H10Cix 3.0700
O1···N1vi 2.8760 (17) H1A···Cl1 2.9300
O1···N1 2.7097 (16) H1B···Cl1xi 2.7400
O1···H1Nvi 2.15 (2) H1B···H10Bx 2.4700
O1···H10A 2.6500 H1N···O1vi 2.15 (2)
O1···H1N 2.22 (2) H1N···C9 2.75 (2)
N1···O1 2.7097 (16) H1N···O1 2.22 (2)
N1···O1vi 2.8760 (17) H2N···H6 2.4000
N2···Cl1ii 3.0969 (13) H2N···H3N 2.11 (3)
N3···C5ii 3.436 (2) H2N···C6 2.82 (2)
N3···C3vii 3.433 (2) H2N···Cl1ii 2.23 (2)
N3···Cl1ii 3.2082 (13) H3···Cl1iv 3.0500
N2···H6 2.9400 H3N···H2N 2.11 (3)
C1···Cl1 3.4838 (16) H3N···Cl1ii 2.40 (2)
C2···Cl1 3.6463 (16) H5···Cl1viii 2.9100
C3···N3vii 3.433 (2) H6···H2N 2.4000
C3···C9vii 3.539 (2) H6···N2 2.9400
C4···C9vii 3.513 (2) H6···Cl1ii 2.9900
C4···C10ii 3.500 (3) H10A···O1 2.6500
C5···N3ii 3.436 (2) H10A···Cl1v 3.0400
C5···C9ii 3.575 (2) H10A···C5ii 3.0400
C5···C10ii 3.579 (3) H10B···C10ix 3.0600
C5···Cl1viii 3.6252 (16) H10B···H1Bxii 2.4700
C6···C9ii 3.358 (2) H10B···C1xii 2.9400
C7···C8vii 3.457 (2) H10C···C10ix 3.0700
C1—N1—C8 112.52 (12) N2—C9—N3 112.47 (12)
C8—N2—C9 124.09 (12) O1—C9—N2 121.32 (12)
C9—N3—C10 120.48 (13) O1—C9—N3 126.20 (13)
C8—N1—H1N 125.2 (14) N1—C1—H1A 111.00
C1—N1—H1N 122.2 (14) N1—C1—H1B 111.00
C8—N2—H2N 118.4 (13) C2—C1—H1A 111.00
C9—N2—H2N 117.5 (13) C2—C1—H1B 111.00
C10—N3—H3N 121.3 (13) H1A—C1—H1B 109.00
C9—N3—H3N 118.2 (13) C2—C3—H3 121.00
N1—C1—C2 101.98 (12) C4—C3—H3 121.00
C1—C2—C3 130.68 (13) C3—C4—H4 119.00
C3—C2—C7 120.12 (13) C5—C4—H4 119.00
C1—C2—C7 109.19 (12) C4—C5—H5 120.00
C2—C3—C4 117.74 (14) C6—C5—H5 120.00
C3—C4—C5 121.78 (14) C5—C6—H6 122.00
C4—C5—C6 120.86 (14) C7—C6—H6 122.00
C5—C6—C7 116.91 (13) N3—C10—H10A 109.00
C2—C7—C8 106.74 (12) N3—C10—H10B 109.00
C2—C7—C6 122.59 (13) N3—C10—H10C 109.00
C6—C7—C8 130.66 (13) H10A—C10—H10B 109.00
N1—C8—C7 109.54 (12) H10A—C10—H10C 109.00
N1—C8—N2 126.82 (13) H10B—C10—H10C 109.00
N2—C8—C7 123.63 (12)
C8—N1—C1—C2 1.26 (17) C1—C2—C7—C6 177.86 (14)
C1—N1—C8—C7 −1.95 (18) C1—C2—C7—C8 −1.00 (17)
C1—N1—C8—N2 178.99 (15) C3—C2—C7—C6 −1.0 (2)
C9—N2—C8—N1 −0.2 (3) C3—C2—C7—C8 −179.83 (14)
C8—N2—C9—N3 176.55 (15) C2—C3—C4—C5 0.6 (2)
C9—N2—C8—C7 −179.15 (14) C3—C4—C5—C6 −0.6 (2)
C8—N2—C9—O1 −3.7 (2) C4—C5—C6—C7 −0.1 (2)
C10—N3—C9—O1 1.4 (3) C5—C6—C7—C8 179.48 (16)
C10—N3—C9—N2 −178.92 (15) C5—C6—C7—C2 0.9 (2)
N1—C1—C2—C3 178.61 (16) C2—C7—C8—N1 1.83 (18)
N1—C1—C2—C7 −0.06 (17) C6—C7—C8—N1 −176.90 (16)
C1—C2—C3—C4 −178.36 (16) C6—C7—C8—N2 2.2 (3)
C7—C2—C3—C4 0.2 (2) C2—C7—C8—N2 −179.07 (15)

Symmetry codes: (i) x, y−1, z; (ii) −x, −y+1, −z+1; (iii) x−1, y, z; (iv) −x+1, −y+1, −z; (v) −x, −y, −z+1; (vi) −x+1, −y, −z+1; (vii) −x+1, −y+1, −z+1; (viii) x, y+1, z; (ix) −x, −y, −z+2; (x) x+1, y, z−1; (xi) x+1, y, z; (xii) x−1, y, z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N···O1 0.81 (2) 2.22 (2) 2.7097 (16) 119.9 (18)
N1—H1N···O1vi 0.81 (2) 2.15 (2) 2.8760 (17) 150 (2)
N2—H2N···Cl1ii 0.90 (2) 2.23 (2) 3.0969 (13) 160.5 (18)
N3—H3N···Cl1ii 0.86 (2) 2.40 (2) 3.2082 (13) 157.0 (17)
C1—H1B···Cl1xi 0.9700 2.7400 3.6755 (16) 162.00

Symmetry codes: (vi) −x+1, −y, −z+1; (ii) −x, −y+1, −z+1; (xi) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: EZ2156).

References

  1. Arfan, M., Tahir, M. N., Khan, R. & Iqbal, M. S. (2008). Acta Cryst. E64, o1505. [DOI] [PMC free article] [PubMed]
  2. Bruker (2005). SADABS Bruker AXS Inc. Madison, Wisconsin, USA.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc. Madison, Wisconsin, USA.
  4. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  5. Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
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  8. Maliha, B., Tariq, M. I., Tahir, M. N., Hussain, I. & Siddiqui, H. L. (2009). Acta Cryst. E65, o42–o43. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003699/ez2156sup1.cif

e-65-0o448-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003699/ez2156Isup2.hkl

e-65-0o448-Isup2.hkl (114KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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