Abstract
In the title compound, {[Co(C10H14N4)2(H2O)2](NO3)2}n, the CoII ion lies on an inversion center and is six-coordinated in an octahedral environment by four N atoms from four different 1,1′-butane-1,4-diyldiimidazole ligands and two O atoms from the two water molecules. The CoII atoms are bridged by ligands, generating a two-dimensional (4,4)-network. Adjacent fishnet planes are linked to the nitrate anions via O—H⋯O hydrogen bonds, forming a three-dimensional supramolecular structure.
Related literature
For the synthesis of 1,1′-butane-1,4-diyldiimidazole, see: Ma et al. (2003 ▶); Yu et al. (2008 ▶) For a related Co complex, see: Dong & Zhang (2006 ▶).
Experimental
Crystal data
[Co(C10H14N4)2(H2O)2](NO3)2
M r = 599.49
Triclinic,
a = 8.574 (7) Å
b = 8.692 (6) Å
c = 9.666 (5) Å
α = 104.71 (2)°
β = 97.14 (3)°
γ = 98.89 (3)°
V = 678.2 (8) Å3
Z = 1
Mo Kα radiation
μ = 0.70 mm−1
T = 291 K
0.45 × 0.28 × 0.26 mm
Data collection
Rigaku R-AXIS RAPID diffractometer
Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.745, T max = 0.842
6717 measured reflections
3073 independent reflections
2888 reflections with I > 2σ(I)
R int = 0.015
Refinement
R[F 2 > 2σ(F 2)] = 0.031
wR(F 2) = 0.096
S = 1.16
3073 reflections
178 parameters
H-atom parameters constrained
Δρmax = 0.35 e Å−3
Δρmin = −0.22 e Å−3
Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005881/ng2547sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005881/ng2547Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Co1—N3 | 2.109 (2) |
| Co1—N1 | 2.1697 (18) |
| Co1—O1 | 2.1838 (16) |
| N3—Co1—N1 | 86.99 (7) |
| N3—Co1—O1 | 90.67 (7) |
| N1—Co1—O1 | 89.79 (6) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H15⋯O4i | 0.85 | 1.94 | 2.775 (3) | 167 |
| O1—H16⋯O2ii | 0.85 | 2.09 | 2.930 (3) | 171 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank Heilongjiang University for supporting this study.
supplementary crystallographic information
Comment
The 1,1'-butane-1,4-diyldiimidazole as a flexible ligand exhibit a variety of supramolecular aggregation patterns (Ma et al., 2003; Dong et al., 2006; Yu et al., 2008). In this paper, we report the new title compound, (I), synthssized by the reaction of 1,1'-butane-1,4-diyldiimidazole ligand and cobalt dinitrate in aqua solution.
In (I), each CoII atom is located on a inversion centre and is six-coordinated in an octahedral environment by four N atoms from four different 1,1'-butane-1,4-diyldiimidazole ligands and two O atoms form the two water molecules (Fig. 1). The Co—N and Co—O distances are normal (Table 1). The CoII atoms are bridged by ligands, generating a two-dimensional (4,4)-network (Fig. 2).
In the crystal, a R44(12) motif is built up by O—H···O hydrogen bonding interaction between the uncoordinated nitrate anions and the coordinated water molecules,which linke the adjacent fishnet planes to a three-dimensional supramolecular structure (Fig. 3, Table 2).
Experimental
1,1'-Butane-1,4-diyldiimidazole ligand was prepared from imidazole and 1,4-dibromobutane in DMSO (Ma et al., 2003a). 1,1'-Butane-1,4-diyldiimidazole (0.76 g, 4 mmol) and cobalt dinitrate (0.73 g, 4 mmol) were dissolved in hot aqua solution (10 ml) to give a clear solution. The resulting solution was allowed to stand in a desiccator at room temperature for a week, pink crystals of (I) were obtained.
Refinement
H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic), C—H = 0.97 Å (methylene), and with Uiso(H) = 1.2Ueq(C). Water H atoms were initially located in a difference Fourier map, but they were treated as riding on their parent atoms with O—H = 0.85 Å and with with Uiso(H) = 1.5Ueq(O).
Figures
Fig. 1.
The molecular structure of (I), showing displacement ellipsoids at the 30% probability level for non-H atoms. Dashed lines indicate the hydrogen-bonding interactions [Symmetry code; (I) -x + 1, -y, -z + 1; (II) -x + 1, -y + 2, -z + 2: (III) -x, -y + 1, -z + 1]
Fig. 2.
A partial packing view, showing the two-dimensional (4,4)-network. Dashed lines indicate the hydrogen-bonding interactions and no involving H atoms have beeb omitted.
Fig. 3.
A Partial packing view, shoving the three-dimensional supramolecular structure. Dashed lines indicate the hydrogen-bonding interactions and no involving H atoms have beeb omitted.
Crystal data
| [Co(C10H14N4)2(H2O)2](NO3)2 | Z = 1 |
| Mr = 599.49 | F(000) = 313 |
| Triclinic, P1 | Dx = 1.468 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.574 (7) Å | Cell parameters from 6295 reflections |
| b = 8.692 (6) Å | θ = 3.0–27.5° |
| c = 9.666 (5) Å | µ = 0.70 mm−1 |
| α = 104.71 (2)° | T = 291 K |
| β = 97.14 (3)° | Block, brown |
| γ = 98.89 (3)° | 0.45 × 0.28 × 0.26 mm |
| V = 678.2 (8) Å3 |
Data collection
| Rigaku R-AXIS RAPID diffractometer | 3073 independent reflections |
| Radiation source: fine-focus sealed tube | 2888 reflections with I > 2σ(I) |
| graphite | Rint = 0.015 |
| ω scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −11→11 |
| Tmin = 0.745, Tmax = 0.842 | k = −11→11 |
| 6717 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H-atom parameters constrained |
| S = 1.16 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.1966P] where P = (Fo2 + 2Fc2)/3 |
| 3073 reflections | (Δ/σ)max < 0.001 |
| 178 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.1755 (2) | 0.2246 (2) | 0.53022 (19) | 0.0325 (4) | |
| H1 | 0.2106 | 0.2822 | 0.6272 | 0.039* | |
| C2 | 0.0680 (2) | 0.1572 (2) | 0.30656 (19) | 0.0336 (4) | |
| H2 | 0.0131 | 0.1605 | 0.2184 | 0.040* | |
| C3 | 0.1346 (2) | 0.0324 (2) | 0.3277 (2) | 0.0372 (4) | |
| H3 | 0.1343 | −0.0642 | 0.2586 | 0.045* | |
| C4 | 0.2858 (2) | −0.0192 (3) | 0.5505 (2) | 0.0424 (5) | |
| H4 | 0.2518 | −0.1333 | 0.4989 | 0.051* | |
| H5 | 0.2548 | −0.0033 | 0.6455 | 0.051* | |
| C5 | 0.4672 (2) | 0.0257 (2) | 0.5695 (2) | 0.0386 (4) | |
| H6 | 0.4997 | 0.1423 | 0.6092 | 0.046* | |
| H7 | 0.5142 | −0.0241 | 0.6393 | 0.046* | |
| C6 | 0.2528 (2) | 0.6569 (2) | 0.77832 (18) | 0.0304 (3) | |
| H8 | 0.1736 | 0.6650 | 0.8359 | 0.036* | |
| C7 | 0.3724 (2) | 0.6120 (2) | 0.59375 (19) | 0.0315 (3) | |
| H9 | 0.3904 | 0.5825 | 0.4985 | 0.038* | |
| C8 | 0.4887 (2) | 0.6696 (2) | 0.7135 (2) | 0.0352 (4) | |
| H10 | 0.5989 | 0.6866 | 0.7159 | 0.042* | |
| C9 | 0.4832 (3) | 0.7684 (3) | 0.9839 (2) | 0.0437 (5) | |
| H11 | 0.5643 | 0.7091 | 1.0092 | 0.052* | |
| H12 | 0.4018 | 0.7584 | 1.0441 | 0.052* | |
| C10 | 0.5592 (2) | 0.9465 (3) | 1.0135 (2) | 0.0449 (5) | |
| H13 | 0.6130 | 0.9868 | 1.1137 | 0.054* | |
| H14 | 0.6398 | 0.9550 | 0.9523 | 0.054* | |
| Co1 | 0.0000 | 0.5000 | 0.5000 | 0.02274 (11) | |
| N1 | 0.09324 (17) | 0.27910 (17) | 0.43482 (15) | 0.0296 (3) | |
| N2 | 0.20264 (17) | 0.07610 (18) | 0.47097 (17) | 0.0318 (3) | |
| N3 | 0.22398 (16) | 0.60381 (16) | 0.63499 (15) | 0.0273 (3) | |
| N4 | 0.41025 (18) | 0.69767 (19) | 0.83026 (16) | 0.0329 (3) | |
| N5 | 0.8937 (2) | 0.6642 (2) | 0.02300 (18) | 0.0456 (4) | |
| O1 | 0.08701 (16) | 0.57801 (16) | 0.32103 (13) | 0.0362 (3) | |
| H15 | 0.1299 | 0.5143 | 0.2619 | 0.054* | |
| H16 | 0.0215 | 0.6177 | 0.2734 | 0.054* | |
| O2 | 0.8432 (2) | 0.6759 (3) | 0.13902 (17) | 0.0653 (5) | |
| O3 | 1.0374 (3) | 0.7011 (3) | 0.0241 (2) | 0.0777 (6) | |
| O4 | 0.7986 (3) | 0.6117 (3) | −0.09384 (18) | 0.0784 (7) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0368 (9) | 0.0342 (9) | 0.0280 (8) | 0.0154 (7) | 0.0043 (6) | 0.0069 (6) |
| C2 | 0.0329 (9) | 0.0340 (9) | 0.0296 (8) | 0.0099 (7) | −0.0003 (6) | 0.0018 (7) |
| C3 | 0.0351 (9) | 0.0295 (8) | 0.0410 (10) | 0.0095 (7) | 0.0044 (7) | −0.0016 (7) |
| C4 | 0.0378 (10) | 0.0439 (10) | 0.0616 (12) | 0.0199 (8) | 0.0163 (9) | 0.0325 (9) |
| C5 | 0.0347 (9) | 0.0401 (10) | 0.0481 (11) | 0.0173 (8) | 0.0071 (8) | 0.0188 (8) |
| C6 | 0.0275 (8) | 0.0326 (8) | 0.0281 (8) | 0.0071 (6) | 0.0016 (6) | 0.0040 (6) |
| C7 | 0.0294 (8) | 0.0352 (9) | 0.0289 (8) | 0.0104 (7) | 0.0043 (6) | 0.0050 (6) |
| C8 | 0.0252 (8) | 0.0408 (9) | 0.0361 (9) | 0.0074 (7) | 0.0022 (7) | 0.0052 (7) |
| C9 | 0.0417 (10) | 0.0535 (12) | 0.0264 (9) | 0.0104 (9) | −0.0092 (7) | 0.0006 (8) |
| C10 | 0.0347 (10) | 0.0518 (12) | 0.0331 (10) | 0.0069 (8) | −0.0095 (7) | −0.0068 (8) |
| Co1 | 0.02260 (16) | 0.02296 (16) | 0.02042 (16) | 0.00763 (11) | −0.00069 (10) | 0.00224 (11) |
| N1 | 0.0317 (7) | 0.0279 (7) | 0.0289 (7) | 0.0123 (6) | 0.0024 (5) | 0.0046 (5) |
| N2 | 0.0292 (7) | 0.0300 (7) | 0.0415 (8) | 0.0124 (6) | 0.0095 (6) | 0.0137 (6) |
| N3 | 0.0256 (7) | 0.0269 (7) | 0.0267 (7) | 0.0074 (5) | −0.0003 (5) | 0.0034 (5) |
| N4 | 0.0286 (7) | 0.0367 (8) | 0.0273 (7) | 0.0071 (6) | −0.0034 (5) | 0.0017 (6) |
| N5 | 0.0577 (11) | 0.0593 (11) | 0.0302 (8) | 0.0315 (9) | 0.0132 (7) | 0.0166 (7) |
| O1 | 0.0396 (7) | 0.0424 (7) | 0.0261 (6) | 0.0096 (5) | 0.0033 (5) | 0.0091 (5) |
| O2 | 0.0727 (12) | 0.0991 (15) | 0.0351 (8) | 0.0308 (11) | 0.0235 (8) | 0.0233 (9) |
| O3 | 0.0612 (12) | 0.1029 (17) | 0.0649 (12) | 0.0139 (11) | 0.0261 (10) | 0.0096 (11) |
| O4 | 0.0786 (13) | 0.1321 (19) | 0.0324 (8) | 0.0623 (13) | 0.0048 (8) | 0.0143 (10) |
Geometric parameters (Å, °)
| C1—N1 | 1.318 (2) | C8—N4 | 1.373 (2) |
| C1—N2 | 1.341 (2) | C8—H10 | 0.9300 |
| C1—H1 | 0.9300 | C9—N4 | 1.470 (2) |
| C2—C3 | 1.350 (3) | C9—C10 | 1.523 (3) |
| C2—N1 | 1.379 (2) | C9—H11 | 0.9700 |
| C2—H2 | 0.9300 | C9—H12 | 0.9700 |
| C3—N2 | 1.366 (3) | C10—C10ii | 1.521 (4) |
| C3—H3 | 0.9300 | C10—H13 | 0.9700 |
| C4—N2 | 1.469 (2) | C10—H14 | 0.9700 |
| C4—C5 | 1.519 (3) | Co1—N3 | 2.109 (2) |
| C4—H4 | 0.9700 | Co1—N3iii | 2.109 (2) |
| C4—H5 | 0.9700 | Co1—N1iii | 2.1697 (18) |
| C5—C5i | 1.510 (4) | Co1—N1 | 2.1697 (18) |
| C5—H6 | 0.9700 | Co1—O1iii | 2.1838 (16) |
| C5—H7 | 0.9700 | Co1—O1 | 2.1838 (16) |
| C6—N3 | 1.322 (2) | N5—O3 | 1.222 (3) |
| C6—N4 | 1.339 (2) | N5—O2 | 1.238 (2) |
| C6—H8 | 0.9300 | N5—O4 | 1.243 (3) |
| C7—C8 | 1.360 (3) | O1—H15 | 0.8501 |
| C7—N3 | 1.377 (2) | O1—H16 | 0.8500 |
| C7—H9 | 0.9300 | ||
| N1—C1—N2 | 112.01 (16) | C9—C10—H13 | 108.7 |
| N1—C1—H1 | 124.0 | C10ii—C10—H14 | 108.7 |
| N2—C1—H1 | 124.0 | C9—C10—H14 | 108.7 |
| C3—C2—N1 | 110.00 (16) | H13—C10—H14 | 107.6 |
| C3—C2—H2 | 125.0 | N3—Co1—N3iii | 180.0 |
| N1—C2—H2 | 125.0 | N3—Co1—N1iii | 93.01 (7) |
| C2—C3—N2 | 106.29 (15) | N3iii—Co1—N1iii | 86.99 (7) |
| C2—C3—H3 | 126.9 | N3—Co1—N1 | 86.99 (7) |
| N2—C3—H3 | 126.9 | N3iii—Co1—N1 | 93.01 (7) |
| N2—C4—C5 | 113.21 (16) | N1iii—Co1—N1 | 180.0 |
| N2—C4—H4 | 108.9 | N3—Co1—O1iii | 89.33 (7) |
| C5—C4—H4 | 108.9 | N3iii—Co1—O1iii | 90.67 (7) |
| N2—C4—H5 | 108.9 | N1iii—Co1—O1iii | 89.79 (6) |
| C5—C4—H5 | 108.9 | N1—Co1—O1iii | 90.21 (6) |
| H4—C4—H5 | 107.8 | N3—Co1—O1 | 90.67 (7) |
| C5i—C5—C4 | 113.9 (2) | N3iii—Co1—O1 | 89.33 (7) |
| C5i—C5—H6 | 108.8 | N1iii—Co1—O1 | 90.21 (6) |
| C4—C5—H6 | 108.8 | N1—Co1—O1 | 89.79 (6) |
| C5i—C5—H7 | 108.8 | O1iii—Co1—O1 | 180.0 |
| C4—C5—H7 | 108.8 | C1—N1—C2 | 104.72 (15) |
| H6—C5—H7 | 107.7 | C1—N1—Co1 | 121.60 (12) |
| N3—C6—N4 | 111.57 (16) | C2—N1—Co1 | 133.01 (12) |
| N3—C6—H8 | 124.2 | C1—N2—C3 | 106.97 (15) |
| N4—C6—H8 | 124.2 | C1—N2—C4 | 124.90 (17) |
| C8—C7—N3 | 109.66 (16) | C3—N2—C4 | 128.10 (16) |
| C8—C7—H9 | 125.2 | C6—N3—C7 | 105.41 (14) |
| N3—C7—H9 | 125.2 | C6—N3—Co1 | 127.19 (12) |
| C7—C8—N4 | 105.97 (16) | C7—N3—Co1 | 126.95 (12) |
| C7—C8—H10 | 127.0 | C6—N4—C8 | 107.39 (15) |
| N4—C8—H10 | 127.0 | C6—N4—C9 | 125.56 (17) |
| N4—C9—C10 | 110.98 (17) | C8—N4—C9 | 126.96 (16) |
| N4—C9—H11 | 109.4 | O3—N5—O2 | 119.7 (2) |
| C10—C9—H11 | 109.4 | O3—N5—O4 | 120.4 (2) |
| N4—C9—H12 | 109.4 | O2—N5—O4 | 119.8 (2) |
| C10—C9—H12 | 109.4 | Co1—O1—H15 | 119.0 |
| H11—C9—H12 | 108.0 | Co1—O1—H16 | 115.0 |
| C10ii—C10—C9 | 114.1 (2) | H15—O1—H16 | 109.0 |
| C10ii—C10—H13 | 108.7 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y+2, −z+2; (iii) −x, −y+1, −z+1.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H15···O4iv | 0.85 | 1.94 | 2.775 (3) | 167 |
| O1—H16···O2v | 0.85 | 2.09 | 2.930 (3) | 171 |
Symmetry codes: (iv) −x+1, −y+1, −z; (v) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2547).
References
- Dong, G.-C. & Zhang, R.-C. (2006). Acta Cryst. E62, m1847–m1849.
- Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
- Ma, J.-F., Yang, J., Zheng, G.-L. & Liu, J.-F. (2003). Inorg. Chem.42, 7531–7534. [DOI] [PubMed]
- Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
- Rigaku/MSC (2002). CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Yu, Y.-H., Shi, A.-E., Su, Y., Hou, G.-F. & Gao, J.-S. (2008). Acta Cryst. E64, m628. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005881/ng2547sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005881/ng2547Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



