Abstract
In the title compound, C15H14N4, the pyrido[2,3-d]pyrimidine system is almost ideally planar (r.m.s. deviation 0.028 Å) with its mean plane almost orthogonal to the 2,6-dimethylphenyl plane. The dihedral angle formed by these planes [87.3 (2)°] is close to the predicted value (89.7°) obtained by molecular-mechanics force-field calculations. Only one of the two active amine H atoms participates in hydrogen bonding, which links molecules into centrosymmetric dimers.
Related literature
For the structures of related pyrido[2,3-d]pyrimidine derivatives, see: Hamby et al. (1997 ▶); Trumpp-Kallmeyer et al. (1998 ▶). For the synthesis of the title compound, see: Bennett et al. (1981 ▶); Blankley & Bennett (1981 ▶). For molecular-mechanics force-field calculations, see: Duan et al. (2003 ▶).
Experimental
Crystal data
C15H14N4
M r = 250.30
Monoclinic,
a = 16.272 (3) Å
b = 10.644 (2) Å
c = 15.234 (3) Å
β = 109.118 (3)°
V = 2493.0 (8) Å3
Z = 8
Mo Kα radiation
μ = 0.08 mm−1
T = 208 K
0.14 × 0.06 × 0.06 mm
Data collection
Bruker Kappa APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.988, T max = 0.995
6161 measured reflections
2863 independent reflections
1706 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.054
wR(F 2) = 0.152
S = 0.98
2863 reflections
174 parameters
H-atom parameters constrained
Δρmax = 0.22 e Å−3
Δρmin = −0.22 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-32 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006242/rz2295sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006242/rz2295Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N4—H4A⋯N1i | 0.87 | 2.18 | 3.044 (2) | 171 |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
The present X-ray study confirmed the structure of the compound reported in Bennett et al. (1981) as 6-(2,6-dimethylphenyl)pyrido[2,3-d]pyrimidin-7-amine. The pyrido[2,3-d]pyrimidine system of the molecule of the title compound (Fig. 1) is planar within 0.045 Å. The 2,6-dimethylphenyl plane is approximately orthogonal to the mean plane of the bicyclic system; the corresponding dihedral angle [87.3 (2)°] is close to predicted value (89.7°), obtained by molecular mechanics force field calculations (Duan et al., 2003). The overall geometry of the molecule is quite close to the structures of previously studied phenyl substituted 7-aminopyrido[2,3-d]pyrimidines (Hamby et al., 1997; Trumpp-Kallmeyer et al., 1998).
Only one of the two amine H atoms (H4A) participates in the H-bonding (Table 1), which is responsible for formation of centrosymmetric dimers in the crystal. The H4B atom is close to the π-electron density of the phenyl ring and is not involved in either intra- or intermolecular H-bonding.
Experimental
The title compound was synthesized according to Bennett et al. (1981) and Blankley & Bennett (1981).
Refinement
All H atoms were treated as riding with the C—H(aromatic), C—H(methyl) and N—H distances of 0.94 Å, 0.97 Å and 0.87 Å respectively; the Uiso(H) were set to 1.2Ueq of the carrying atom for aromatic and amine, and 1.5Ueq for methyl H atoms.
Figures
Fig. 1.
Molecular structure of the title compound, showing 50% probability displacement ellipsoids and atom numbering scheme. H atoms are drawn as circles with arbitrary small radius.
Fig. 2.
The crystal packing diagram viewed down the b-axis; H-bonds are shown as dashed lines.
Crystal data
| C15H14N4 | F(000) = 1056 |
| Mr = 250.30 | Dx = 1.334 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 1859 reflections |
| a = 16.272 (3) Å | θ = 2.3–27.8° |
| b = 10.644 (2) Å | µ = 0.08 mm−1 |
| c = 15.234 (3) Å | T = 208 K |
| β = 109.118 (3)° | Block, colorless |
| V = 2493.0 (8) Å3 | 0.14 × 0.06 × 0.06 mm |
| Z = 8 |
Data collection
| Bruker Kappa-APEX2 CCD area-detector diffractometer | 2863 independent reflections |
| Radiation source: fine-focus sealed tube | 1706 reflections with I > 2σ(I) |
| graphite | Rint = 0.037 |
| φ and ω scans | θmax = 28.2°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −21→21 |
| Tmin = 0.988, Tmax = 0.995 | k = −13→10 |
| 6161 measured reflections | l = −11→20 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.152 | H-atom parameters constrained |
| S = 0.98 | w = 1/[σ2(Fo2) + (0.0773P)2] where P = (Fo2 + 2Fc2)/3 |
| 2863 reflections | (Δ/σ)max < 0.001 |
| 174 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.60306 (12) | 0.28432 (17) | 0.63650 (12) | 0.0292 (4) | |
| C2 | 0.66357 (12) | 0.27235 (16) | 0.58459 (13) | 0.0286 (4) | |
| C3 | 0.56152 (12) | 0.17232 (17) | 0.46410 (13) | 0.0298 (4) | |
| C4 | 0.46019 (14) | 0.0833 (2) | 0.34015 (15) | 0.0425 (5) | |
| H4 | 0.4461 | 0.0508 | 0.2796 | 0.051* | |
| C5 | 0.41654 (13) | 0.12949 (19) | 0.46163 (14) | 0.0386 (5) | |
| H5 | 0.3743 | 0.1300 | 0.4914 | 0.046* | |
| C6 | 0.49866 (12) | 0.17682 (17) | 0.50973 (13) | 0.0309 (4) | |
| C7 | 0.52301 (12) | 0.23505 (18) | 0.59840 (13) | 0.0323 (5) | |
| H7 | 0.4829 | 0.2392 | 0.6308 | 0.039* | |
| C8 | 0.62801 (12) | 0.35600 (18) | 0.72563 (13) | 0.0302 (4) | |
| C9 | 0.66754 (12) | 0.29645 (19) | 0.81040 (13) | 0.0322 (5) | |
| C10 | 0.68565 (13) | 0.3677 (2) | 0.89141 (14) | 0.0389 (5) | |
| H10 | 0.7113 | 0.3285 | 0.9493 | 0.047* | |
| C11 | 0.66687 (14) | 0.4936 (2) | 0.88847 (15) | 0.0456 (6) | |
| H11 | 0.6798 | 0.5399 | 0.9439 | 0.055* | |
| C12 | 0.62906 (14) | 0.5519 (2) | 0.80438 (15) | 0.0451 (6) | |
| H12 | 0.6164 | 0.6382 | 0.8028 | 0.054* | |
| C13 | 0.60939 (12) | 0.48549 (19) | 0.72209 (13) | 0.0355 (5) | |
| C14 | 0.69087 (15) | 0.1587 (2) | 0.81607 (15) | 0.0472 (6) | |
| H14A | 0.6435 | 0.1098 | 0.8241 | 0.071* | |
| H14B | 0.7433 | 0.1446 | 0.8685 | 0.071* | |
| H14C | 0.7008 | 0.1331 | 0.7592 | 0.071* | |
| C15 | 0.56830 (15) | 0.5511 (2) | 0.63050 (15) | 0.0500 (6) | |
| H15A | 0.5664 | 0.6408 | 0.6409 | 0.075* | |
| H15B | 0.5097 | 0.5197 | 0.6016 | 0.075* | |
| H15C | 0.6024 | 0.5350 | 0.5901 | 0.075* | |
| N1 | 0.64297 (10) | 0.21747 (15) | 0.50164 (10) | 0.0315 (4) | |
| N2 | 0.54103 (11) | 0.12193 (16) | 0.37767 (11) | 0.0377 (4) | |
| N3 | 0.39463 (11) | 0.08379 (17) | 0.37626 (12) | 0.0435 (5) | |
| N4 | 0.74304 (10) | 0.32180 (15) | 0.61956 (11) | 0.0375 (4) | |
| H4A | 0.7791 | 0.3174 | 0.5883 | 0.045* | |
| H4B | 0.7587 | 0.3584 | 0.6736 | 0.045* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0304 (10) | 0.0319 (10) | 0.0273 (10) | 0.0037 (8) | 0.0122 (8) | 0.0018 (8) |
| C2 | 0.0303 (10) | 0.0287 (10) | 0.0283 (10) | 0.0014 (8) | 0.0115 (8) | 0.0037 (8) |
| C3 | 0.0311 (10) | 0.0302 (10) | 0.0292 (10) | −0.0008 (8) | 0.0116 (8) | 0.0015 (8) |
| C4 | 0.0454 (13) | 0.0515 (14) | 0.0317 (11) | −0.0075 (10) | 0.0141 (10) | −0.0073 (10) |
| C5 | 0.0325 (11) | 0.0459 (12) | 0.0393 (12) | −0.0015 (9) | 0.0142 (9) | −0.0036 (10) |
| C6 | 0.0317 (10) | 0.0326 (11) | 0.0305 (10) | 0.0015 (8) | 0.0129 (8) | 0.0018 (9) |
| C7 | 0.0303 (11) | 0.0379 (11) | 0.0340 (11) | 0.0029 (8) | 0.0178 (9) | 0.0010 (9) |
| C8 | 0.0259 (10) | 0.0378 (11) | 0.0312 (10) | −0.0020 (8) | 0.0151 (8) | −0.0034 (9) |
| C9 | 0.0281 (10) | 0.0373 (11) | 0.0330 (11) | −0.0026 (8) | 0.0124 (9) | −0.0010 (9) |
| C10 | 0.0337 (11) | 0.0530 (14) | 0.0303 (11) | −0.0046 (9) | 0.0107 (9) | −0.0028 (10) |
| C11 | 0.0475 (13) | 0.0527 (15) | 0.0372 (13) | −0.0062 (10) | 0.0144 (10) | −0.0156 (11) |
| C12 | 0.0474 (13) | 0.0382 (12) | 0.0508 (14) | 0.0008 (10) | 0.0176 (11) | −0.0090 (11) |
| C13 | 0.0358 (11) | 0.0356 (11) | 0.0374 (12) | −0.0009 (9) | 0.0149 (9) | −0.0018 (9) |
| C14 | 0.0541 (14) | 0.0454 (14) | 0.0386 (12) | 0.0074 (10) | 0.0105 (10) | 0.0038 (10) |
| C15 | 0.0591 (15) | 0.0417 (13) | 0.0499 (14) | 0.0078 (11) | 0.0188 (12) | 0.0070 (11) |
| N1 | 0.0316 (9) | 0.0381 (9) | 0.0289 (9) | −0.0014 (7) | 0.0156 (7) | −0.0005 (7) |
| N2 | 0.0390 (10) | 0.0462 (10) | 0.0306 (9) | −0.0056 (8) | 0.0150 (8) | −0.0052 (8) |
| N3 | 0.0378 (10) | 0.0520 (12) | 0.0409 (11) | −0.0065 (8) | 0.0134 (8) | −0.0079 (9) |
| N4 | 0.0336 (9) | 0.0488 (11) | 0.0347 (9) | −0.0064 (8) | 0.0175 (8) | −0.0098 (8) |
Geometric parameters (Å, °)
| C1—C7 | 1.347 (3) | C9—C10 | 1.395 (3) |
| C1—C2 | 1.456 (2) | C9—C14 | 1.510 (3) |
| C1—C8 | 1.493 (2) | C10—C11 | 1.372 (3) |
| C2—N1 | 1.332 (2) | C10—H10 | 0.9400 |
| C2—N4 | 1.335 (2) | C11—C12 | 1.374 (3) |
| C3—N1 | 1.348 (2) | C11—H11 | 0.9400 |
| C3—N2 | 1.358 (2) | C12—C13 | 1.382 (3) |
| C3—C6 | 1.413 (3) | C12—H12 | 0.9400 |
| C4—N2 | 1.317 (3) | C13—C15 | 1.507 (3) |
| C4—N3 | 1.351 (3) | C14—H14A | 0.9700 |
| C4—H4 | 0.9400 | C14—H14B | 0.9700 |
| C5—N3 | 1.323 (2) | C14—H14C | 0.9700 |
| C5—C6 | 1.391 (3) | C15—H15A | 0.9700 |
| C5—H5 | 0.9400 | C15—H15B | 0.9700 |
| C6—C7 | 1.419 (3) | C15—H15C | 0.9700 |
| C7—H7 | 0.9400 | N4—H4A | 0.8700 |
| C8—C9 | 1.392 (3) | N4—H4B | 0.8700 |
| C8—C13 | 1.408 (3) | ||
| C7—C1—C2 | 117.54 (17) | C9—C10—H10 | 119.3 |
| C7—C1—C8 | 121.83 (16) | C10—C11—C12 | 119.9 (2) |
| C2—C1—C8 | 120.51 (16) | C10—C11—H11 | 120.1 |
| N1—C2—N4 | 117.49 (16) | C12—C11—H11 | 120.1 |
| N1—C2—C1 | 123.29 (17) | C11—C12—C13 | 121.0 (2) |
| N4—C2—C1 | 119.19 (17) | C11—C12—H12 | 119.5 |
| N1—C3—N2 | 116.55 (16) | C13—C12—H12 | 119.5 |
| N1—C3—C6 | 123.26 (17) | C12—C13—C8 | 118.86 (19) |
| N2—C3—C6 | 120.19 (17) | C12—C13—C15 | 120.24 (19) |
| N2—C4—N3 | 129.19 (19) | C8—C13—C15 | 120.89 (18) |
| N2—C4—H4 | 115.4 | C9—C14—H14A | 109.5 |
| N3—C4—H4 | 115.4 | C9—C14—H14B | 109.5 |
| N3—C5—C6 | 123.63 (18) | H14A—C14—H14B | 109.5 |
| N3—C5—H5 | 118.2 | C9—C14—H14C | 109.5 |
| C6—C5—H5 | 118.2 | H14A—C14—H14C | 109.5 |
| C5—C6—C3 | 116.98 (18) | H14B—C14—H14C | 109.5 |
| C5—C6—C7 | 125.45 (17) | C13—C15—H15A | 109.5 |
| C3—C6—C7 | 117.48 (17) | C13—C15—H15B | 109.5 |
| C1—C7—C6 | 120.61 (17) | H15A—C15—H15B | 109.5 |
| C1—C7—H7 | 119.7 | C13—C15—H15C | 109.5 |
| C6—C7—H7 | 119.7 | H15A—C15—H15C | 109.5 |
| C9—C8—C13 | 120.61 (17) | H15B—C15—H15C | 109.5 |
| C9—C8—C1 | 121.08 (17) | C2—N1—C3 | 117.76 (15) |
| C13—C8—C1 | 118.31 (17) | C4—N2—C3 | 115.93 (17) |
| C8—C9—C10 | 118.21 (19) | C5—N3—C4 | 114.02 (17) |
| C8—C9—C14 | 121.74 (17) | C2—N4—H4A | 120.0 |
| C10—C9—C14 | 120.05 (18) | C2—N4—H4B | 120.0 |
| C11—C10—C9 | 121.4 (2) | H4A—N4—H4B | 120.0 |
| C11—C10—H10 | 119.3 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N4—H4A···N1i | 0.87 | 2.18 | 3.044 (2) | 171 |
Symmetry codes: (i) −x+3/2, −y+1/2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2295).
References
- Bennett, L. R., Blankley, C. J., Fleming, R. W., Smith, R. D. & Tessman, D. K. (1981). J. Med. Chem.24, 382–389. [DOI] [PubMed]
- Blankley, C. J. & Bennett, L. R. (1981). US Patent No. 4 271 164.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006242/rz2295sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006242/rz2295Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


