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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Mar 6;65(Pt 4):m375. doi: 10.1107/S1600536809007387

catena-Poly[[diaquacobalt(II)]-bis(μ-3-carboxy­adamantane-1-carboxyl­ato-κ2 O 1:O 3)]

Li-Ming Tang a, Jia-Hui Xu a, Xiao-Yan Han a, Wei Xu a,*
PMCID: PMC2968899  PMID: 21582328

Abstract

In the title compound, [Co(C12H15O4)2(H2O)2]n, adjacent CoII atoms (Inline graphic symmetry) are bridged by 3-carboxy­adamantane-1-carboxyl­ate anions, forming a chain running along [001]. Inter­chain O—H⋯O hydrogen bonds link the chains into layers parallel to (100); the layers are further connected via inter­layer hydrogen bonds inter­actions, forming a three-dimensional framework.

Related literature

For related compounds, see: Nielsen et al. (2008); Zhao et al. (2007); Zheng et al. (2008).graphic file with name e-65-0m375-scheme1.jpg

Experimental

Crystal data

  • [Co(C12H15O4)2(H2O)2]

  • M r = 541.44

  • Orthorhombic, Inline graphic

  • a = 10.718 (2) Å

  • b = 23.638 (5) Å

  • c = 9.0726 (18) Å

  • V = 2298.6 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.81 mm−1

  • T = 293 K

  • 0.10 × 0.10 × 0.10 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.921, T max = 0.925

  • 20865 measured reflections

  • 2622 independent reflections

  • 2145 reflections with I > 2σ(I)

  • R int = 0.033

Refinement

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.086

  • S = 1.06

  • 2622 reflections

  • 161 parameters

  • H-atom parameters constrained

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks ptcLa, I. DOI: 10.1107/S1600536809007387/ng2552sup1.cif

e-65-0m375-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007387/ng2552Isup2.hkl

e-65-0m375-Isup2.hkl (128.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co—O1 2.0574 (12)
Co—O5 2.0956 (14)
Co—O4i 2.1061 (12)

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H1⋯O1ii 0.81 1.82 2.6058 (19) 166
O5—H2⋯O2 0.80 2.07 2.7762 (18) 147
O5—H3⋯O2iii 0.81 2.02 2.8334 (18) 175

Symmetry codes: (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This project was sponsored by the K. C. Wong Magna Fund of Ningbo University and supported by the Expert Project of Key Basic Research of the Ministry of Science and Technology of China (grant No. 2003CCA00800), the Zhejiang Provincial Natural Science Foundation (grant No. Z203067) and the Ningbo Municipal Natural Science Foundation (grant No. 2006 A610061).

supplementary crystallographic information

Comment

The cambridge Structural Database (Version 5.30, February 2009) lists few examples of metal (II) adamantane-1,3-dicarboxylates (Nielsen et al., 2008; Zhao et al., 2007). The dicarboxylate group is rigid, much more different from the aliphatic dicarboxylic acids (Zheng et al., 2008), effected severely by spacial steric hindrance. The asymmetric unit of the title compoud consists of one Co2+ cation, one aqua ligand and one Hadc- anion (H2adc = adamantane-1,3-dicarboxylic acid) (Fig.1). The Co atoms at the Wckoff 4a sites are crystallographically imposed by iversion center and are each located in an elongated octahedral coordination sphere defined by two aqua ligands and four carboxylate oxygen atoms from four 3-carboxyadamantane-1-carboxylate anions. The axial Co—O bond distances averaged at 2.106 (1) Å are slightly longer than the equatorial ones of 2.078 (1) Å. The trans- and cisoid O—Co—O angles fall in the regions 88.49 (5)–91.51 (5)° and 180°, respectively, exhibiting slight diviation from the corresponding values for a regular geometry (Table 1). Each carboxylate anion monodentately coordinates one Co2+ ion in syn fashion. Interestingly, one of the two carboxylate anions from each ligand is protonated and coordinates one Co2+ ion by carbonyl oxygen atom, which is rare in former reports. The Co2+ ions are bridged by 3-carboxyadamantane-1-carboxylate anions to form one-dimensional chains running along the [001] direction. On the basis of the interchain O—H···O hydrogen bonds (Table 2),these chains are assembled into layers parallel to (100) (Fig.2). The layers are further connected to form a three-dimensional framework via interlayer hydrogen bonds interaction.

Experimental

Adamantane-1,3-dicarboxylic acid (H2adc) (0.0666 g, 0.3 mmol), 1 M NaOH (0.5 ml, 0.5 mmol) was consequently added to 15 mol aqueous solution, then the mixture was heated constantly at 90 °C and stirred for 30 min, yielding colorless solution, to which was added CoCl2.6H2O (0.2485 g, 1.0 mmol) and continually stirred for 30 min, then the purple solution (pH = 5.12) was cooled to room temperature and laid undisturbed, purple block-like crystals was afforded after two weeks.

Refinement

H atoms bonded to C atoms were palced in geometrically calculated position and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). H atoms attached to O atoms were found in a difference Fourier synthesis and were refined using a riding model, with the O—H distances fixed as initially found and with Uiso(H) values set at 1.2 Ueq(O).

Figures

Fig. 1.

Fig. 1.

View of the molecular structure of the title compound, Displacement ellipsoids are drawn at the 45% probability level.[Symmetry codes: (i) x, y, z + 1; (ii) -x + 1, -y + 1, -z; (iii) x, y, z - 1; (iv) -x + 1, -y + 1, -z + 1.]

Fig. 2.

Fig. 2.

The two-dimensional layer structure constructed by one-dimensional chains through hydrogen bonds interaction (the hydrogen bonds are neglected)

Crystal data

[Co(C12H15O4)2(H2O)2] F(000) = 1140
Mr = 541.44 Dx = 1.565 Mg m3
Orthorhombic, Pccn Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2ac Cell parameters from 20865 reflections
a = 10.718 (2) Å θ = 3.1–27.5°
b = 23.638 (5) Å µ = 0.81 mm1
c = 9.0726 (18) Å T = 293 K
V = 2298.6 (8) Å3 Block, purple
Z = 4 0.10 × 0.10 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer 2622 independent reflections
Radiation source: fine-focus sealed tube 2145 reflections with I > 2σ(I)
graphite Rint = 0.033
Detector resolution: 0 pixels mm-1 θmax = 27.5°, θmin = 3.1°
ω scans h = −13→13
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −30→30
Tmin = 0.921, Tmax = 0.925 l = −11→11
20865 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0444P)2 + 0.9177P] where P = (Fo2 + 2Fc2)/3
2622 reflections (Δ/σ)max = 0.001
161 parameters Δρmax = 0.35 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co 0.5000 0.5000 0.0000 0.02148 (11)
C1 0.50924 (15) 0.62852 (7) 0.64285 (18) 0.0239 (3)
C2 0.37038 (16) 0.64210 (7) 0.61757 (18) 0.0300 (4)
H2A 0.3213 0.6077 0.6246 0.036*
H2B 0.3413 0.6683 0.6924 0.036*
C3 0.35442 (17) 0.66835 (9) 0.46523 (19) 0.0343 (4)
H3A 0.2660 0.6770 0.4490 0.041*
C4 0.39899 (16) 0.62682 (8) 0.34654 (18) 0.0310 (4)
H4A 0.3497 0.5924 0.3511 0.037*
H4B 0.3878 0.6435 0.2498 0.037*
C5 0.53696 (15) 0.61264 (7) 0.37055 (16) 0.0212 (3)
C6 0.55413 (17) 0.58683 (7) 0.52439 (16) 0.0256 (3)
H6A 0.6415 0.5780 0.5403 0.031*
H6B 0.5069 0.5519 0.5315 0.031*
C7 0.4296 (2) 0.72253 (8) 0.4553 (2) 0.0394 (5)
H7A 0.4012 0.7490 0.5297 0.047*
H7B 0.4176 0.7398 0.3593 0.047*
C8 0.56719 (19) 0.70952 (7) 0.47855 (19) 0.0327 (4)
H8A 0.6155 0.7446 0.4718 0.039*
C9 0.58580 (17) 0.68311 (7) 0.63123 (18) 0.0295 (4)
H9A 0.5594 0.7096 0.7068 0.035*
H9B 0.6735 0.6748 0.6465 0.035*
C10 0.61268 (16) 0.66778 (7) 0.36080 (18) 0.0278 (4)
H10A 0.7005 0.6597 0.3758 0.033*
H10B 0.6028 0.6844 0.2637 0.033*
C11 0.58484 (15) 0.57136 (7) 0.25371 (16) 0.0247 (3)
O1 0.52461 (12) 0.56998 (5) 0.13165 (12) 0.0296 (3)
O2 0.67854 (12) 0.54217 (6) 0.27703 (13) 0.0378 (3)
C12 0.51789 (16) 0.60130 (7) 0.79318 (18) 0.0280 (4)
O3 0.51926 (19) 0.63717 (6) 0.90404 (15) 0.0615 (5)
H1 0.5154 0.6209 0.9823 0.074*
O4 0.51779 (12) 0.55044 (5) 0.80980 (13) 0.0312 (3)
O5 0.69310 (12) 0.48644 (6) 0.00823 (12) 0.0314 (3)
H2 0.7197 0.5019 0.0807 0.038*
H3 0.7333 0.5010 −0.0575 0.038*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co 0.02775 (18) 0.02296 (17) 0.01371 (17) 0.00182 (11) 0.00009 (11) 0.00032 (11)
C1 0.0317 (9) 0.0242 (7) 0.0158 (7) 0.0027 (6) 0.0009 (6) 0.0004 (6)
C2 0.0277 (9) 0.0389 (9) 0.0232 (8) −0.0011 (7) 0.0058 (7) −0.0017 (7)
C3 0.0239 (9) 0.0516 (11) 0.0274 (8) 0.0131 (8) −0.0004 (7) 0.0010 (8)
C4 0.0250 (9) 0.0467 (10) 0.0213 (8) 0.0020 (7) −0.0039 (6) −0.0009 (7)
C5 0.0233 (7) 0.0267 (7) 0.0137 (6) 0.0007 (6) −0.0009 (6) −0.0011 (6)
C6 0.0361 (9) 0.0243 (7) 0.0164 (7) 0.0041 (7) 0.0003 (6) −0.0009 (6)
C7 0.0554 (13) 0.0336 (9) 0.0292 (9) 0.0186 (9) 0.0036 (9) 0.0067 (8)
C8 0.0438 (11) 0.0246 (8) 0.0296 (9) −0.0059 (7) 0.0065 (8) 0.0010 (7)
C9 0.0349 (9) 0.0297 (8) 0.0239 (8) −0.0043 (7) −0.0014 (7) −0.0066 (7)
C10 0.0303 (9) 0.0308 (8) 0.0222 (8) −0.0032 (7) 0.0047 (6) 0.0028 (7)
C11 0.0298 (8) 0.0283 (7) 0.0160 (7) −0.0005 (6) 0.0006 (6) 0.0003 (6)
O1 0.0444 (7) 0.0296 (6) 0.0148 (5) 0.0054 (5) −0.0070 (5) −0.0027 (5)
O2 0.0362 (7) 0.0532 (8) 0.0239 (6) 0.0179 (6) −0.0045 (5) −0.0106 (6)
C12 0.0373 (10) 0.0288 (8) 0.0181 (8) 0.0048 (7) 0.0004 (6) −0.0005 (7)
O3 0.1393 (17) 0.0298 (7) 0.0155 (6) 0.0092 (8) −0.0021 (7) −0.0003 (6)
O4 0.0484 (8) 0.0268 (6) 0.0185 (6) −0.0005 (5) 0.0019 (5) 0.0024 (5)
O5 0.0289 (7) 0.0377 (6) 0.0274 (6) 0.0007 (5) 0.0016 (5) −0.0031 (5)

Geometric parameters (Å, °)

Co—O1i 2.0574 (12) C5—C10 1.538 (2)
Co—O1 2.0574 (12) C6—H6A 0.9700
Co—O5 2.0956 (14) C6—H6B 0.9700
Co—O5i 2.0956 (14) C7—C8 1.522 (3)
Co—O4ii 2.1061 (12) C7—H7A 0.9700
Co—O4iii 2.1061 (12) C7—H7B 0.9700
C1—C12 1.511 (2) C8—C9 1.532 (2)
C1—C9 1.533 (2) C8—C10 1.534 (2)
C1—C6 1.535 (2) C8—H8A 0.9800
C1—C2 1.540 (2) C9—H9A 0.9700
C2—C3 1.525 (2) C9—H9B 0.9700
C2—H2A 0.9700 C10—H10A 0.9700
C2—H2B 0.9700 C10—H10B 0.9700
C3—C7 1.516 (3) C11—O2 1.237 (2)
C3—C4 1.533 (2) C11—O1 1.2823 (19)
C3—H3A 0.9800 C12—O4 1.212 (2)
C4—C5 1.532 (2) C12—O3 1.316 (2)
C4—H4A 0.9700 O3—H1 0.8083
C4—H4B 0.9700 O4—Coiv 2.1061 (12)
C5—C11 1.530 (2) O5—H2 0.8045
C5—C6 1.534 (2) O5—H3 0.8128
O1i—Co—O1 180.00 (6) C6—C5—C10 109.03 (13)
O1i—Co—O5 91.39 (5) C5—C6—C1 110.11 (13)
O1—Co—O5 88.61 (5) C5—C6—H6A 109.6
O1i—Co—O5i 88.61 (5) C1—C6—H6A 109.6
O1—Co—O5i 91.39 (5) C5—C6—H6B 109.6
O5—Co—O5i 180.00 (6) C1—C6—H6B 109.6
O1i—Co—O4ii 90.51 (5) H6A—C6—H6B 108.2
O1—Co—O4ii 89.49 (5) C3—C7—C8 109.63 (14)
O5—Co—O4ii 88.49 (5) C3—C7—H7A 109.7
O5i—Co—O4ii 91.51 (5) C8—C7—H7A 109.7
O1i—Co—O4iii 89.49 (5) C3—C7—H7B 109.7
O1—Co—O4iii 90.51 (5) C8—C7—H7B 109.7
O5—Co—O4iii 91.51 (5) H7A—C7—H7B 108.2
O5i—Co—O4iii 88.49 (5) C7—C8—C9 109.50 (15)
O4ii—Co—O4iii 180.00 (5) C7—C8—C10 109.98 (15)
C12—C1—C9 112.81 (14) C9—C8—C10 109.04 (14)
C12—C1—C6 109.83 (13) C7—C8—H8A 109.4
C9—C1—C6 108.93 (14) C9—C8—H8A 109.4
C12—C1—C2 106.41 (13) C10—C8—H8A 109.4
C9—C1—C2 109.37 (14) C8—C9—C1 109.59 (13)
C6—C1—C2 109.42 (14) C8—C9—H9A 109.8
C3—C2—C1 109.17 (13) C1—C9—H9A 109.8
C3—C2—H2A 109.8 C8—C9—H9B 109.8
C1—C2—H2A 109.8 C1—C9—H9B 109.8
C3—C2—H2B 109.8 H9A—C9—H9B 108.2
C1—C2—H2B 109.8 C8—C10—C5 109.71 (13)
H2A—C2—H2B 108.3 C8—C10—H10A 109.7
C7—C3—C2 109.76 (15) C5—C10—H10A 109.7
C7—C3—C4 109.50 (15) C8—C10—H10B 109.7
C2—C3—C4 109.95 (15) C5—C10—H10B 109.7
C7—C3—H3A 109.2 H10A—C10—H10B 108.2
C2—C3—H3A 109.2 O2—C11—O1 122.85 (15)
C4—C3—H3A 109.2 O2—C11—C5 120.66 (14)
C5—C4—C3 109.93 (13) O1—C11—C5 116.47 (14)
C5—C4—H4A 109.7 C11—O1—Co 125.90 (11)
C3—C4—H4A 109.7 O4—C12—O3 122.98 (16)
C5—C4—H4B 109.7 O4—C12—C1 122.33 (15)
C3—C4—H4B 109.7 O3—C12—C1 114.61 (15)
H4A—C4—H4B 108.2 C12—O3—H1 111.4
C11—C5—C4 111.41 (13) C12—O4—Coiv 131.58 (11)
C11—C5—C6 109.66 (13) Co—O5—H2 108.0
C4—C5—C6 109.40 (13) Co—O5—H3 115.6
C11—C5—C10 108.90 (13) H2—O5—H3 102.6
C4—C5—C10 108.42 (13)

Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y+1, −z+1; (iii) x, y, z−1; (iv) x, y, z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O3—H1···O1iv 0.81 1.82 2.6058 (19) 166
O5—H2···O2 0.80 2.07 2.7762 (18) 147
O5—H3···O2v 0.81 2.02 2.8334 (18) 175

Symmetry codes: (iv) x, y, z+1; (v) −x+3/2, y, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2552).

References

  1. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  2. Nielsen, R. B., Kongshaug, K. O. & Fjellvåg, H. (2008). J. Mater. Chem.18, 1002–1007.
  3. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  4. Rigaku/MSC (2004). CrystalStructure Rigaku/MSC Inc., The Woodlands, Texas, USA.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Zhao, G.-L., Shi, X. & Ng, S. W. (2007). Acta Cryst. E63, m2150.
  7. Zheng, Y. Q., Lin, J. L., Xie, H. Z. & Wang, X. W. (2008). Inorg. Chem.47, 10280–10287. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks ptcLa, I. DOI: 10.1107/S1600536809007387/ng2552sup1.cif

e-65-0m375-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007387/ng2552Isup2.hkl

e-65-0m375-Isup2.hkl (128.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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