Abstract
The title compound, [Zn(C13H16BrN2O2)I(CH3OH)], is a new mononuclear zinc(II) complex synthesized by the reaction of equimolar quantities of 5-bromosalicylaldehyde, 2-morpholinoethylamine and ZnI2 in methanol. The Zn atom is four-coordinate in a distorted tetrahedral geometry, binding to a phenolate O and an imine N atom of the Schiff base ligand, the O atom of a methanol molecule and one I− anion. In the crystal structure, adjacent molecules are linked through intermolecular O—H⋯O hydrogen bonds, forming centrosymmetric dimers.
Related literature
For the structures of related zinc(II) complexes, see: Ali et al. (2008 ▶); You (2005 ▶); Zhu & Yang (2008 ▶).
Experimental
Crystal data
[Zn(C13H16BrN2O2)I(CH4O)]
M r = 536.50
Monoclinic,
a = 7.747 (2) Å
b = 24.977 (3) Å
c = 9.598 (2) Å
β = 100.497 (4)°
V = 1826.1 (6) Å3
Z = 4
Mo Kα radiation
μ = 5.24 mm−1
T = 298 K
0.30 × 0.30 × 0.28 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.217, T max = 0.231
12877 measured reflections
3928 independent reflections
2994 reflections with I > 2σ(I)
R int = 0.038
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.096
S = 1.03
3928 reflections
203 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.96 e Å−3
Δρmin = −0.71 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809009234/sj2595sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009234/sj2595Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Zn1—N1 | 2.014 (3) |
| Zn1—O3 | 2.023 (3) |
| Zn1—O1 | 2.078 (3) |
| Zn1—I1 | 2.5346 (9) |
| N1—Zn1—O3 | 114.78 (13) |
| N1—Zn1—O1 | 90.15 (12) |
| O3—Zn1—O1 | 90.42 (13) |
| N1—Zn1—I1 | 130.76 (10) |
| O3—Zn1—I1 | 113.36 (9) |
| O1—Zn1—I1 | 99.31 (9) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O3—H3A⋯O1i | 0.84 (5) | 1.81 (5) | 2.649 (4) | 178 (7) |
Symmetry code: (i)
.
Acknowledgments
The author acknowledges a research grant from Qiqihar University.
supplementary crystallographic information
Comment
Metal complexes of the Schiff base 4-bromo-2-[(2-morpholinoethylimino)methyl]phenol have not been reported previously. In this paper, the author reports the crystal structure of the title compound, a new mononuclear zinc(II) complex, (I), Fig. 1.
In (I), the Zn atom is four-coordinate in a tetrahedral geometry, with one O and one imine N atoms of a Schiff base ligand, one O atom of a methanol molecule, and one I atom. The tetrahedral geometry is severely distorted, as evidenced by the coordinate bond lengths and angles (Table 1). The bond lengths and angles in this complex are comparable with those in the similar zinc(II) complexes (Ali et al., 2008; You, 2005; Zhu & Yang, 2008). In the crystal structure, adjacent molecules are linked through intermolecular O–H···O hydrogen bonds (Table 2), forming centrosymmetric dimers (Fig. 2).
Experimental
Equimolar quantities (1.0 mmol each) of 5-bromosalicyaldehyde, 2-morpholinoethylamine, and ZnI2 were mixed in methanol. The mixture was stirred at reflux for 30 min and filtered. The filtrate was slowly evaporated for a few days, yielding yellow block-like crystals.
Refinement
H3A was located from a difference Fourier map and refined isotropically, with the O–H distance restrained to 0.85 (1) Å, and with Uiso(H) values fixed at 0.08 Å2. The other H atoms were placed in idealized positions and constrained to ride on their parent atoms with C–H distances of 0.93–0.97 Å, and with Uiso(H) set at 1.2 or 1.5Ueq(C).
Figures
Fig. 1.
The structure of the complex, showing 30% probability displacement ellipsoids and the atom-numbering scheme.
Fig. 2.
The crystal packing of (I) showing the formation of centrosymmetric dimers. Hydrogen bonds are shown as dashed lines.
Crystal data
| [Zn(C13H16BrN2O2)I(CH4O)] | F(000) = 1040 |
| Mr = 536.50 | Dx = 1.951 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 3128 reflections |
| a = 7.747 (2) Å | θ = 2.6–25.8° |
| b = 24.977 (3) Å | µ = 5.24 mm−1 |
| c = 9.598 (2) Å | T = 298 K |
| β = 100.497 (4)° | Block, yellow |
| V = 1826.1 (6) Å3 | 0.30 × 0.30 × 0.28 mm |
| Z = 4 |
Data collection
| Bruker SMART CCD area-detector diffractometer | 3928 independent reflections |
| Radiation source: fine-focus sealed tube | 2994 reflections with I > 2σ(I) |
| graphite | Rint = 0.038 |
| ω scans | θmax = 27.0°, θmin = 1.6° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
| Tmin = 0.217, Tmax = 0.231 | k = −30→31 |
| 12877 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0385P)2 + 2.0556P] where P = (Fo2 + 2Fc2)/3 |
| 3928 reflections | (Δ/σ)max < 0.001 |
| 203 parameters | Δρmax = 0.96 e Å−3 |
| 1 restraint | Δρmin = −0.71 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 0.50584 (7) | 0.55343 (2) | 0.28004 (5) | 0.03432 (14) | |
| I1 | 0.17781 (4) | 0.568293 (16) | 0.25354 (4) | 0.05466 (14) | |
| Br1 | 1.05025 (10) | 0.31501 (2) | 0.17245 (8) | 0.0752 (2) | |
| O1 | 0.5139 (4) | 0.47117 (12) | 0.3133 (3) | 0.0403 (8) | |
| O2 | 0.6023 (12) | 0.73465 (19) | 0.4160 (5) | 0.119 (3) | |
| O3 | 0.6375 (4) | 0.56560 (12) | 0.4796 (3) | 0.0370 (7) | |
| N1 | 0.6591 (4) | 0.54528 (13) | 0.1329 (4) | 0.0276 (7) | |
| N2 | 0.5630 (5) | 0.65133 (14) | 0.2055 (4) | 0.0381 (9) | |
| C1 | 0.7471 (6) | 0.45205 (16) | 0.1873 (4) | 0.0298 (9) | |
| C2 | 0.6310 (6) | 0.43807 (17) | 0.2793 (5) | 0.0340 (10) | |
| C3 | 0.6426 (7) | 0.38546 (18) | 0.3320 (5) | 0.0464 (13) | |
| H3 | 0.5649 | 0.3747 | 0.3899 | 0.056* | |
| C4 | 0.7640 (8) | 0.34916 (19) | 0.3017 (5) | 0.0502 (13) | |
| H4 | 0.7691 | 0.3148 | 0.3396 | 0.060* | |
| C5 | 0.8782 (7) | 0.36454 (18) | 0.2139 (5) | 0.0409 (11) | |
| C6 | 0.8706 (6) | 0.41432 (18) | 0.1569 (5) | 0.0364 (10) | |
| H6 | 0.9477 | 0.4237 | 0.0972 | 0.044* | |
| C7 | 0.7474 (6) | 0.50294 (17) | 0.1163 (4) | 0.0310 (9) | |
| H7 | 0.8209 | 0.5054 | 0.0501 | 0.037* | |
| C8 | 0.6873 (6) | 0.59135 (17) | 0.0431 (5) | 0.0366 (10) | |
| H8A | 0.6722 | 0.5799 | −0.0549 | 0.044* | |
| H8B | 0.8066 | 0.6044 | 0.0713 | 0.044* | |
| C9 | 0.5603 (6) | 0.63595 (17) | 0.0561 (4) | 0.0346 (10) | |
| H9A | 0.5897 | 0.6669 | 0.0041 | 0.042* | |
| H9B | 0.4426 | 0.6247 | 0.0137 | 0.042* | |
| C10 | 0.4279 (9) | 0.6926 (2) | 0.2083 (6) | 0.0645 (18) | |
| H10A | 0.3126 | 0.6775 | 0.1741 | 0.077* | |
| H10B | 0.4458 | 0.7219 | 0.1464 | 0.077* | |
| C11 | 0.4376 (14) | 0.7133 (3) | 0.3593 (8) | 0.099 (3) | |
| H11A | 0.3489 | 0.7407 | 0.3593 | 0.118* | |
| H11B | 0.4118 | 0.6842 | 0.4192 | 0.118* | |
| C12 | 0.7298 (13) | 0.6951 (3) | 0.4179 (7) | 0.100 (3) | |
| H12A | 0.7050 | 0.6656 | 0.4769 | 0.119* | |
| H12B | 0.8438 | 0.7097 | 0.4592 | 0.119* | |
| C13 | 0.7348 (9) | 0.6746 (2) | 0.2692 (6) | 0.0619 (16) | |
| H13A | 0.7629 | 0.7038 | 0.2106 | 0.074* | |
| H13B | 0.8256 | 0.6476 | 0.2735 | 0.074* | |
| C14 | 0.8215 (7) | 0.5553 (2) | 0.5089 (6) | 0.0561 (14) | |
| H14A | 0.8423 | 0.5183 | 0.4908 | 0.084* | |
| H14B | 0.8673 | 0.5633 | 0.6064 | 0.084* | |
| H14C | 0.8788 | 0.5773 | 0.4492 | 0.084* | |
| H3A | 0.592 (8) | 0.554 (2) | 0.547 (4) | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0288 (3) | 0.0448 (3) | 0.0309 (3) | 0.0064 (2) | 0.0093 (2) | −0.0008 (2) |
| I1 | 0.02973 (19) | 0.0787 (3) | 0.0568 (2) | 0.00815 (16) | 0.01119 (16) | 0.01217 (18) |
| Br1 | 0.0901 (5) | 0.0545 (4) | 0.0895 (5) | 0.0392 (3) | 0.0386 (4) | 0.0100 (3) |
| O1 | 0.046 (2) | 0.0353 (17) | 0.0463 (19) | 0.0053 (14) | 0.0257 (17) | 0.0043 (14) |
| O2 | 0.253 (9) | 0.041 (3) | 0.068 (3) | −0.004 (4) | 0.044 (4) | −0.013 (2) |
| O3 | 0.0370 (18) | 0.0466 (19) | 0.0286 (16) | −0.0013 (14) | 0.0093 (14) | 0.0038 (14) |
| N1 | 0.0282 (19) | 0.0265 (18) | 0.0288 (18) | 0.0003 (14) | 0.0067 (15) | 0.0010 (14) |
| N2 | 0.053 (3) | 0.0282 (19) | 0.037 (2) | 0.0047 (17) | 0.0179 (19) | 0.0044 (15) |
| C1 | 0.032 (2) | 0.030 (2) | 0.027 (2) | 0.0010 (18) | 0.0060 (19) | −0.0024 (17) |
| C2 | 0.038 (3) | 0.035 (2) | 0.030 (2) | −0.0023 (19) | 0.008 (2) | −0.0002 (18) |
| C3 | 0.066 (4) | 0.036 (3) | 0.044 (3) | 0.004 (2) | 0.027 (3) | 0.007 (2) |
| C4 | 0.075 (4) | 0.029 (2) | 0.048 (3) | 0.005 (2) | 0.014 (3) | 0.005 (2) |
| C5 | 0.046 (3) | 0.038 (3) | 0.040 (3) | 0.012 (2) | 0.010 (2) | −0.005 (2) |
| C6 | 0.037 (3) | 0.037 (2) | 0.037 (2) | 0.004 (2) | 0.013 (2) | −0.0018 (19) |
| C7 | 0.029 (2) | 0.038 (2) | 0.027 (2) | −0.0031 (19) | 0.0084 (18) | −0.0034 (18) |
| C8 | 0.042 (3) | 0.034 (2) | 0.036 (2) | 0.000 (2) | 0.015 (2) | 0.0049 (19) |
| C9 | 0.038 (3) | 0.033 (2) | 0.033 (2) | 0.0041 (19) | 0.009 (2) | 0.0095 (18) |
| C10 | 0.107 (5) | 0.039 (3) | 0.057 (3) | 0.030 (3) | 0.041 (4) | 0.017 (2) |
| C11 | 0.174 (10) | 0.065 (5) | 0.073 (5) | 0.055 (5) | 0.064 (6) | 0.022 (4) |
| C12 | 0.196 (10) | 0.046 (4) | 0.051 (4) | −0.041 (5) | 0.007 (5) | −0.009 (3) |
| C13 | 0.087 (5) | 0.046 (3) | 0.053 (3) | −0.026 (3) | 0.013 (3) | −0.005 (2) |
| C14 | 0.040 (3) | 0.075 (4) | 0.050 (3) | −0.008 (3) | 0.001 (3) | 0.017 (3) |
Geometric parameters (Å, °)
| Zn1—N1 | 2.014 (3) | C4—H4 | 0.9300 |
| Zn1—O3 | 2.023 (3) | C5—C6 | 1.355 (6) |
| Zn1—O1 | 2.078 (3) | C6—H6 | 0.9300 |
| Zn1—I1 | 2.5346 (9) | C7—H7 | 0.9300 |
| Br1—C5 | 1.913 (4) | C8—C9 | 1.507 (6) |
| O1—C2 | 1.311 (5) | C8—H8A | 0.9700 |
| O2—C12 | 1.394 (10) | C8—H8B | 0.9700 |
| O2—C11 | 1.398 (11) | C9—H9A | 0.9700 |
| O3—C14 | 1.425 (6) | C9—H9B | 0.9700 |
| O3—H3A | 0.84 (5) | C10—C11 | 1.528 (9) |
| N1—C7 | 1.285 (5) | C10—H10A | 0.9700 |
| N1—C8 | 1.478 (5) | C10—H10B | 0.9700 |
| N2—C10 | 1.472 (6) | C11—H11A | 0.9700 |
| N2—C13 | 1.478 (7) | C11—H11B | 0.9700 |
| N2—C9 | 1.481 (5) | C12—C13 | 1.525 (8) |
| C1—C6 | 1.411 (6) | C12—H12A | 0.9700 |
| C1—C2 | 1.414 (6) | C12—H12B | 0.9700 |
| C1—C7 | 1.442 (6) | C13—H13A | 0.9700 |
| C2—C3 | 1.405 (6) | C13—H13B | 0.9700 |
| C3—C4 | 1.375 (7) | C14—H14A | 0.9600 |
| C3—H3 | 0.9300 | C14—H14B | 0.9600 |
| C4—C5 | 1.383 (7) | C14—H14C | 0.9600 |
| N1—Zn1—O3 | 114.78 (13) | C9—C8—H8A | 109.4 |
| N1—Zn1—O1 | 90.15 (12) | N1—C8—H8B | 109.4 |
| O3—Zn1—O1 | 90.42 (13) | C9—C8—H8B | 109.4 |
| N1—Zn1—I1 | 130.76 (10) | H8A—C8—H8B | 108.0 |
| O3—Zn1—I1 | 113.36 (9) | N2—C9—C8 | 112.2 (4) |
| O1—Zn1—I1 | 99.31 (9) | N2—C9—H9A | 109.2 |
| C2—O1—Zn1 | 126.0 (3) | C8—C9—H9A | 109.2 |
| C12—O2—C11 | 109.3 (5) | N2—C9—H9B | 109.2 |
| C14—O3—Zn1 | 118.2 (3) | C8—C9—H9B | 109.2 |
| C14—O3—H3A | 109 (4) | H9A—C9—H9B | 107.9 |
| Zn1—O3—H3A | 118 (4) | N2—C10—C11 | 110.1 (5) |
| C7—N1—C8 | 115.5 (3) | N2—C10—H10A | 109.6 |
| C7—N1—Zn1 | 124.4 (3) | C11—C10—H10A | 109.6 |
| C8—N1—Zn1 | 119.9 (3) | N2—C10—H10B | 109.6 |
| C10—N2—C13 | 107.9 (4) | C11—C10—H10B | 109.6 |
| C10—N2—C9 | 108.4 (4) | H10A—C10—H10B | 108.2 |
| C13—N2—C9 | 110.8 (4) | O2—C11—C10 | 112.5 (6) |
| C6—C1—C2 | 119.8 (4) | O2—C11—H11A | 109.1 |
| C6—C1—C7 | 115.6 (4) | C10—C11—H11A | 109.1 |
| C2—C1—C7 | 124.6 (4) | O2—C11—H11B | 109.1 |
| O1—C2—C3 | 120.1 (4) | C10—C11—H11B | 109.1 |
| O1—C2—C1 | 123.2 (4) | H11A—C11—H11B | 107.8 |
| C3—C2—C1 | 116.7 (4) | O2—C12—C13 | 111.4 (6) |
| C4—C3—C2 | 122.8 (4) | O2—C12—H12A | 109.4 |
| C4—C3—H3 | 118.6 | C13—C12—H12A | 109.4 |
| C2—C3—H3 | 118.6 | O2—C12—H12B | 109.4 |
| C3—C4—C5 | 118.9 (4) | C13—C12—H12B | 109.4 |
| C3—C4—H4 | 120.5 | H12A—C12—H12B | 108.0 |
| C5—C4—H4 | 120.5 | N2—C13—C12 | 110.2 (6) |
| C6—C5—C4 | 121.0 (4) | N2—C13—H13A | 109.6 |
| C6—C5—Br1 | 119.3 (4) | C12—C13—H13A | 109.6 |
| C4—C5—Br1 | 119.6 (4) | N2—C13—H13B | 109.6 |
| C5—C6—C1 | 120.7 (4) | C12—C13—H13B | 109.6 |
| C5—C6—H6 | 119.7 | H13A—C13—H13B | 108.1 |
| C1—C6—H6 | 119.7 | O3—C14—H14A | 109.5 |
| N1—C7—C1 | 128.3 (4) | O3—C14—H14B | 109.5 |
| N1—C7—H7 | 115.8 | H14A—C14—H14B | 109.5 |
| C1—C7—H7 | 115.8 | O3—C14—H14C | 109.5 |
| N1—C8—C9 | 111.1 (3) | H14A—C14—H14C | 109.5 |
| N1—C8—H8A | 109.4 | H14B—C14—H14C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O3—H3A···O1i | 0.84 (5) | 1.81 (5) | 2.649 (4) | 178 (7) |
Symmetry codes: (i) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2595).
References
- Ali, H. M., Mohamed Mustafa, M. I., Rizal, M. R. & Ng, S. W. (2008). Acta Cryst. E64, m718–m719. [DOI] [PMC free article] [PubMed]
- Bruker (1998). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- You, Z.-L. (2005). Acta Cryst. E61, m1571–m1573.
- Zhu, X.-W. & Yang, X.-Z. (2008). Acta Cryst. E64, m1090–m1091. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809009234/sj2595sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009234/sj2595Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


