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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Mar 28;65(Pt 4):o919. doi: 10.1107/S1600536809010873

(Z)-2-Amino-3-[(E)-benzyl­ideneamino]but-2-enedinitrile

G Varsha a, V Arun a, Manju Sebastian a, P Leeju a, Digna Varghese a, K K M Yusuff a,*
PMCID: PMC2968917  PMID: 21582621

Abstract

The asymmetric unit of the title compound, C11H8N4, contains two independent mol­ecules. In the crystal structure, inter­molecular N—H⋯N hydrogen bonds link mol­ecules into ribbons extended in the [100] direction.

Related literature

For some properties of Schiff base ligands, see: Arun, Robinson et al. (2009); Arun, Sridevi et al. (2009). For related structures, see: MacLachlan et al. (1996); Mague & Eduok (2000); Varghese et al. (2009).graphic file with name e-65-0o919-scheme1.jpg

Experimental

Crystal data

  • C11H8N4

  • M r = 196.21

  • Monoclinic, Inline graphic

  • a = 6.9569 (19) Å

  • b = 22.796 (6) Å

  • c = 13.516 (4) Å

  • β = 100.983 (5)°

  • V = 2104.2 (10) Å3

  • Z = 8

  • Mo Kα radiation radiation

  • μ = 0.08 mm−1

  • T = 298 K

  • 0.42 × 0.18 × 0.18 mm

Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2001) T min = 0.980, T max = 0.984

  • 12239 measured reflections

  • 4173 independent reflections

  • 3216 reflections with I > 2σ(I)

  • R int = 0.036

Refinement

  • R[F 2 > 2σ(F 2)] = 0.106

  • wR(F 2) = 0.214

  • S = 1.29

  • 4173 reflections

  • 272 parameters

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809010873/cv2533sup1.cif

e-65-0o919-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010873/cv2533Isup2.hkl

e-65-0o919-Isup2.hkl (200.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯N3i 0.86 2.36 3.096 (4) 144
N2—H2B⋯N8ii 0.86 2.25 3.090 (5) 165
N6—H6A⋯N7iii 0.86 2.51 3.228 (5) 142
N6—H6B⋯N4iv 0.86 2.28 3.057 (4) 150

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The X-ray data were collected on the diffractometer facilities at the University of Hyderabad provided by the Department of Science and Technology. MS thanks KSCSTE, Trivandrum, Kerala, for financial assistance. DV gratefully acknowledges financial support from the Council of Scientific and Industrial Research (CSIR), India.

supplementary crystallographic information

Comment

In continuation of our study of Schiff base ligands and their metal complexes (Arun, Robinson et al., 2009; Arun, Sridevi et al., 2009; Varghese et al., 2009), we present here the title compound, (I).

The asymmetric unit of (I) contains two independent molecules (Fig. 1). All bond lengths and angles in (I) are normal and correspond to those observed in the related compounds (MacLachlan et al., 1996; Mague & Eduok 2000). In both independent molecules, the benzene ring and diaminomaleonitrile moiety are anti with respect to azomethine C=N. In the crystal structure, intermolecular N—H···N hydrogen bonds (Table 1) link the molecules into ribbons extended in direction [100].

Experimental

Benzaldehyde (Merck) and 2,3-diaminomaleonitrile (Aldrich) are of reagent grade and are used without further purification. A hot solution of 2,3-diaminomaleonitrile (1 mmol) in methanol (25 ml) was added slowly over a hot solution of benzaldehyde (1 mmol) in the same solvent (25 ml) and the solution was refluxed for three hours. The resulting yellow solution was cooled in ice and the precipitated imine was filtered off and washed with cold methanol and dried under vacuum. Yellow crystals of (1) suitable for X-ray analysis were obtained by slow evaporation of the Schiff base in absolute ethanol (yield 85%; m.p. 463 K).

Refinement

H atoms were positioned geometrically (C—H = 0.93 Å, N—H = 0.86 Å) and refined in riding mode, with Uiso (H) = 1.2Ueq(C, N).

Figures

Fig. 1.

Fig. 1.

Two independent molecules of (I) with the atomic labelling scheme and 50% probability displacement ellipsoids.

Crystal data

C11H8N4 F(000) = 816
Mr = 196.21 Dx = 1.239 Mg m3
Monoclinic, P21/c Mo Kα radiation radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4803 reflections
a = 6.9569 (19) Å θ = 2.4–26.1°
b = 22.796 (6) Å µ = 0.08 mm1
c = 13.516 (4) Å T = 298 K
β = 100.983 (5)° Rod, yellow
V = 2104.2 (10) Å3 0.42 × 0.18 × 0.18 mm
Z = 8

Data collection

Bruker SMART APEX CCD area-detector diffractometer 4173 independent reflections
Radiation source: fine-focus sealed tube 3216 reflections with I > 2σ(I)
graphite Rint = 0.036
φ and ω scans θmax = 26.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) h = −8→8
Tmin = 0.980, Tmax = 0.984 k = −28→23
12239 measured reflections l = −16→15

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.106 H-atom parameters constrained
wR(F2) = 0.214 w = 1/[σ2(Fo2) + (0.0476P)2 + 1.6604P] where P = (Fo2 + 2Fc2)/3
S = 1.29 (Δ/σ)max < 0.001
4173 reflections Δρmax = 0.22 e Å3
272 parameters Δρmin = −0.21 e Å3
0 restraints Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0021 (6)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.3264 (5) 0.39467 (14) 0.3626 (2) 0.0398 (8)
C2 0.3971 (6) 0.34110 (16) 0.3379 (3) 0.0590 (11)
H2 0.5196 0.3387 0.3202 0.071*
C3 0.2851 (8) 0.29092 (19) 0.3397 (4) 0.0772 (14)
H3 0.3324 0.2548 0.3229 0.093*
C4 0.1054 (8) 0.2944 (2) 0.3661 (4) 0.0792 (15)
H4 0.0313 0.2606 0.3677 0.095*
C5 0.0339 (6) 0.3473 (2) 0.3902 (3) 0.0673 (12)
H5 −0.0887 0.3494 0.4078 0.081*
C6 0.1427 (5) 0.39773 (17) 0.3883 (3) 0.0501 (9)
H6 0.0933 0.4337 0.4043 0.060*
C7 0.4454 (5) 0.44731 (14) 0.3591 (3) 0.0388 (8)
H7 0.5684 0.4436 0.3422 0.047*
C8 0.5013 (4) 0.54703 (14) 0.3760 (2) 0.0366 (8)
C9 0.4227 (5) 0.60037 (14) 0.3899 (3) 0.0397 (8)
C10 0.6996 (5) 0.54341 (15) 0.3605 (3) 0.0469 (9)
C11 0.5356 (5) 0.65316 (15) 0.3859 (3) 0.0459 (9)
N1 0.3855 (4) 0.49769 (11) 0.3784 (2) 0.0367 (7)
N2 0.2412 (4) 0.60811 (13) 0.4084 (2) 0.0558 (9)
H2A 0.1673 0.5783 0.4122 0.067*
H2B 0.1991 0.6429 0.4165 0.067*
N3 0.8559 (5) 0.53781 (16) 0.3485 (3) 0.0764 (12)
N4 0.6208 (5) 0.69534 (14) 0.3808 (3) 0.0693 (11)
C12 0.2008 (5) 0.53605 (15) 0.1295 (3) 0.0452 (9)
C13 0.3849 (5) 0.53053 (17) 0.1052 (3) 0.0550 (10)
H13 0.4312 0.4934 0.0933 0.066*
C14 0.4994 (7) 0.5783 (2) 0.0985 (4) 0.0736 (13)
H14 0.6224 0.5739 0.0819 0.088*
C15 0.4310 (8) 0.6331 (2) 0.1165 (4) 0.0823 (16)
H15 0.5078 0.6659 0.1109 0.099*
C16 0.2515 (9) 0.64021 (18) 0.1425 (4) 0.0821 (16)
H16 0.2090 0.6775 0.1562 0.098*
C17 0.1334 (7) 0.59197 (17) 0.1484 (3) 0.0639 (12)
H17 0.0104 0.5967 0.1648 0.077*
C18 0.0775 (5) 0.48496 (15) 0.1349 (3) 0.0450 (9)
H18 −0.0432 0.4899 0.1538 0.054*
C19 0.0133 (4) 0.38528 (14) 0.1179 (3) 0.0379 (8)
C20 0.0863 (5) 0.33203 (15) 0.0987 (3) 0.0416 (8)
C21 −0.1801 (5) 0.38947 (15) 0.1396 (3) 0.0450 (9)
C22 −0.0336 (6) 0.28020 (17) 0.0983 (3) 0.0540 (10)
N5 0.1316 (4) 0.43361 (12) 0.1143 (2) 0.0396 (7)
N6 0.2648 (4) 0.32364 (12) 0.0767 (2) 0.0555 (9)
H6A 0.3410 0.3531 0.0741 0.067*
H6B 0.3028 0.2888 0.0652 0.067*
N7 −0.3334 (4) 0.39419 (15) 0.1568 (3) 0.0660 (10)
N8 −0.1258 (5) 0.23914 (15) 0.0977 (3) 0.0809 (13)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0501 (19) 0.0328 (18) 0.0338 (19) −0.0032 (15) 0.0015 (15) 0.0035 (15)
C2 0.070 (3) 0.036 (2) 0.069 (3) 0.0021 (19) 0.007 (2) 0.002 (2)
C3 0.112 (4) 0.035 (2) 0.079 (3) −0.002 (3) 0.006 (3) 0.005 (2)
C4 0.110 (4) 0.053 (3) 0.070 (3) −0.038 (3) 0.006 (3) 0.010 (2)
C5 0.067 (3) 0.069 (3) 0.064 (3) −0.026 (2) 0.009 (2) 0.003 (2)
C6 0.056 (2) 0.042 (2) 0.052 (2) −0.0072 (17) 0.0069 (18) 0.0007 (18)
C7 0.0369 (17) 0.0353 (19) 0.045 (2) 0.0016 (14) 0.0104 (15) −0.0001 (15)
C8 0.0334 (16) 0.0365 (19) 0.0387 (19) −0.0038 (14) 0.0042 (14) −0.0004 (15)
C9 0.0413 (18) 0.0328 (18) 0.044 (2) −0.0093 (15) 0.0064 (15) 0.0002 (16)
C10 0.044 (2) 0.039 (2) 0.059 (2) −0.0075 (16) 0.0116 (17) −0.0016 (17)
C11 0.051 (2) 0.034 (2) 0.050 (2) −0.0021 (17) 0.0028 (17) 0.0064 (17)
N1 0.0324 (13) 0.0315 (15) 0.0451 (17) −0.0031 (12) 0.0045 (12) 0.0013 (13)
N2 0.0506 (17) 0.0364 (17) 0.085 (3) −0.0009 (14) 0.0238 (17) −0.0085 (16)
N3 0.0413 (18) 0.066 (2) 0.127 (4) −0.0080 (17) 0.030 (2) −0.011 (2)
N4 0.078 (2) 0.038 (2) 0.089 (3) −0.0181 (18) 0.010 (2) 0.0034 (18)
C12 0.057 (2) 0.0302 (19) 0.042 (2) −0.0028 (16) −0.0046 (17) 0.0012 (16)
C13 0.060 (2) 0.048 (2) 0.057 (3) −0.0086 (19) 0.010 (2) 0.0004 (19)
C14 0.085 (3) 0.058 (3) 0.077 (3) −0.026 (2) 0.013 (3) −0.002 (2)
C15 0.109 (4) 0.060 (3) 0.070 (3) −0.038 (3) −0.005 (3) 0.007 (3)
C16 0.125 (4) 0.022 (2) 0.084 (4) −0.002 (3) −0.018 (3) 0.002 (2)
C17 0.078 (3) 0.040 (2) 0.067 (3) 0.009 (2) −0.006 (2) −0.006 (2)
C18 0.0454 (19) 0.044 (2) 0.045 (2) 0.0033 (16) 0.0091 (16) −0.0035 (17)
C19 0.0361 (16) 0.0337 (19) 0.043 (2) −0.0032 (14) 0.0058 (15) 0.0029 (15)
C20 0.0466 (19) 0.0349 (19) 0.043 (2) −0.0065 (15) 0.0083 (16) −0.0014 (16)
C21 0.0450 (19) 0.038 (2) 0.051 (2) −0.0029 (16) 0.0064 (17) −0.0022 (17)
C22 0.054 (2) 0.041 (2) 0.070 (3) −0.0045 (18) 0.017 (2) −0.006 (2)
N5 0.0410 (15) 0.0309 (15) 0.0456 (17) −0.0022 (12) 0.0050 (13) −0.0021 (13)
N6 0.0520 (18) 0.0287 (16) 0.093 (3) 0.0009 (14) 0.0315 (18) −0.0022 (16)
N7 0.0443 (18) 0.070 (2) 0.088 (3) −0.0002 (17) 0.0241 (18) 0.002 (2)
N8 0.072 (2) 0.046 (2) 0.127 (4) −0.0218 (19) 0.026 (2) −0.005 (2)

Geometric parameters (Å, °)

C1—C2 1.381 (5) C12—C13 1.387 (5)
C1—C6 1.389 (5) C12—C17 1.398 (5)
C1—C7 1.464 (4) C12—C18 1.457 (5)
C2—C3 1.387 (6) C13—C14 1.362 (5)
C2—H2 0.9300 C13—H13 0.9300
C3—C4 1.365 (7) C14—C15 1.375 (6)
C3—H3 0.9300 C14—H14 0.9300
C4—C5 1.369 (6) C15—C16 1.370 (7)
C4—H4 0.9300 C15—H15 0.9300
C5—C6 1.378 (5) C16—C17 1.384 (6)
C5—H5 0.9300 C16—H16 0.9300
C6—H6 0.9300 C17—H17 0.9300
C7—N1 1.266 (4) C18—N5 1.276 (4)
C7—H7 0.9300 C18—H18 0.9300
C8—C9 1.360 (4) C19—C20 1.360 (4)
C8—N1 1.387 (4) C19—N5 1.382 (4)
C8—C10 1.437 (4) C19—C21 1.434 (4)
C9—N2 1.345 (4) C20—N6 1.344 (4)
C9—C11 1.443 (4) C20—C22 1.446 (5)
C10—N3 1.136 (4) C21—N7 1.139 (4)
C11—N4 1.138 (4) C22—N8 1.134 (4)
N2—H2A 0.8600 N6—H6A 0.8600
N2—H2B 0.8600 N6—H6B 0.8600
C2—C1—C6 119.5 (3) C13—C12—C17 118.9 (4)
C2—C1—C7 119.2 (3) C13—C12—C18 121.2 (3)
C6—C1—C7 121.3 (3) C17—C12—C18 119.9 (4)
C1—C2—C3 119.9 (4) C14—C13—C12 121.4 (4)
C1—C2—H2 120.1 C14—C13—H13 119.3
C3—C2—H2 120.1 C12—C13—H13 119.3
C4—C3—C2 120.1 (4) C13—C14—C15 119.2 (5)
C4—C3—H3 119.9 C13—C14—H14 120.4
C2—C3—H3 119.9 C15—C14—H14 120.4
C3—C4—C5 120.3 (4) C16—C15—C14 121.1 (4)
C3—C4—H4 119.8 C16—C15—H15 119.5
C5—C4—H4 119.8 C14—C15—H15 119.5
C4—C5—C6 120.3 (4) C15—C16—C17 120.1 (4)
C4—C5—H5 119.8 C15—C16—H16 120.0
C6—C5—H5 119.8 C17—C16—H16 120.0
C5—C6—C1 119.8 (4) C16—C17—C12 119.4 (4)
C5—C6—H6 120.1 C16—C17—H17 120.3
C1—C6—H6 120.1 C12—C17—H17 120.3
N1—C7—C1 121.8 (3) N5—C18—C12 121.4 (3)
N1—C7—H7 119.1 N5—C18—H18 119.3
C1—C7—H7 119.1 C12—C18—H18 119.3
C9—C8—N1 118.1 (3) C20—C19—N5 117.3 (3)
C9—C8—C10 119.6 (3) C20—C19—C21 119.9 (3)
N1—C8—C10 122.3 (3) N5—C19—C21 122.9 (3)
N2—C9—C8 124.0 (3) N6—C20—C19 124.3 (3)
N2—C9—C11 115.7 (3) N6—C20—C22 116.1 (3)
C8—C9—C11 120.3 (3) C19—C20—C22 119.6 (3)
N3—C10—C8 176.8 (4) N7—C21—C19 178.4 (4)
N4—C11—C9 178.2 (4) N8—C22—C20 179.1 (4)
C7—N1—C8 121.0 (3) C18—N5—C19 121.4 (3)
C9—N2—H2A 120.0 C20—N6—H6A 120.0
C9—N2—H2B 120.0 C20—N6—H6B 120.0
H2A—N2—H2B 120.0 H6A—N6—H6B 120.0

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2A···N3i 0.86 2.36 3.096 (4) 144
N2—H2B···N8ii 0.86 2.25 3.090 (5) 165
N6—H6A···N7iii 0.86 2.51 3.228 (5) 142
N6—H6B···N4iv 0.86 2.28 3.057 (4) 150

Symmetry codes: (i) x−1, y, z; (ii) −x, y+1/2, −z+1/2; (iii) x+1, y, z; (iv) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2533).

References

  1. Arun, V., Robinson, P. P., Manju, S., Leeju, P., Varsha, G., Digna, V. & Yusuff, K. K. M. (2009). Dyes Pigments In the press. doi:10.1016/j.dyepig.2009.01.010
  2. Arun, V., Sridevi, N., Robinson, P. P., Manju, S. & Yusuff, K. K. M. (2009). J. Mol. Catal. A Chem In the press. doi:10.1016/j.molcata.2009.02.011
  3. Bruker (2000). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. MacLachlan, M. J., Park, M. K. & Thomas, L. K. (1996). Inorg. Chem 35, 5492–5499. [DOI] [PubMed]
  5. Mague, J. T. & Eduok, E. E. (2000). J. Chem. Crystallogr 30, 311–320.
  6. Sheldrick, G. M. (2001). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  9. Varghese, D., Arun, V., Sebastian, M., Leeju, P., Varsha, G. & Yusuff, K. K. M. (2009). Acta Cryst. E65, o435. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809010873/cv2533sup1.cif

e-65-0o919-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010873/cv2533Isup2.hkl

e-65-0o919-Isup2.hkl (200.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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