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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Mar 25;65(Pt 4):o818. doi: 10.1107/S1600536809009325

1,5-Bis[(E)-cyclo­pentyl­idene]thio­carbono­hydrazide

Qingliang Guo a,*, Junshan Sun b, Jikun Li b, Rentao Wu a, Wenzeng Duan a
PMCID: PMC2969008  PMID: 21582539

Abstract

In the title mol­ecule, C11H18N4S, an intra­molecular N—H⋯N hydrogen bond [N⋯N = 2.558 (3)Å] is observed. The two cyclo­pentyl rings are disordered between two conformations in 1:1 and 2:1 ratios. In the crystal structure, weak inter­molecular N—H⋯S hydrogen bonds [N⋯S = 3.547 (3) Å] link pairs of mol­ecules into centrosymmetric dimers.

Related literature

For related Schiff base derivatives of thio­carbohydrazide, see: Bacchi et al. (1996); Chantrapromma et al. (2001).graphic file with name e-65-0o818-scheme1.jpg

Experimental

Crystal data

  • C11H18N4S

  • M r = 238.35

  • Triclinic, Inline graphic

  • a = 6.0344 (19) Å

  • b = 10.114 (3) Å

  • c = 11.137 (3) Å

  • α = 106.579 (5)°

  • β = 96.897 (5)°

  • γ = 100.574 (5)°

  • V = 629.6 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 273 K

  • 0.12 × 0.08 × 0.06 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.972, T max = 0.986

  • 3340 measured reflections

  • 2212 independent reflections

  • 1673 reflections with I > 2σ(I)

  • R int = 0.013

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.112

  • S = 1.03

  • 2212 reflections

  • 172 parameters

  • 53 restraints

  • H-atom parameters constrained

  • Δρmax = 0.16 e Å−3

  • Δρmin = −0.17 e Å−3

Data collection: SMART (Siemens, 1996) ; cell refinement: SAINT (Siemens, 1996); data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809009325/cv2503sup1.cif

e-65-0o818-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009325/cv2503Isup2.hkl

e-65-0o818-Isup2.hkl (108.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯N2 0.86 2.17 2.558 (3) 108
N1—H1⋯S1i 0.86 2.70 3.547 (3) 170

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Postgraduate Foundation of Taishan University for financial support (grant No. Y06-2-10).

supplementary crystallographic information

Comment

Thiocarbohydrazide and its Schiff base derivatives have attracted considerable interest in the chemistry of metal complexes containing nitrogen and donors (Bacchi et al., 1996; Chantrapromma et al., 2001]. The interest in this field may be attributed to the striking structural features in the resultant metal complexes and their biological activities. Herein we present the synthesis and crystal structure of the title compound.

The title compound is shown in Fig. 1. Two cyclopentanone rings are disordered between two conformations in the ratios 1:1 and 2:1, respectively. The four N atoms and the C═S are almost coplanar with the mean deviation of 0.024 (2) Å. In this molecule, there exist intramolecular N—H···N hydrogen bond (Table 1). Weak intermolecular N—H···S hydrogen bonds (Table 1) link two molecules into centrosymmetric dimers.

Experimental

A solution of cyclopentanone and thiocarbohydrazide in ethanol in the ratio of 2:1 were refluxed for 8 h with stirring and cooled to the room temperature. The yellow precipitated powder of title compound was filtered and washed with water and ethanol, and then air dried thoroughly. A crystal suitable for X-ray diffraction was obtained by evaporation from a DMF and ethanol mixture. The yield is 78% and elemental analysis: calc. for C11H18N4S: C 55.43, H 7.61, N 23.51; found: C 55.26, H 7.49, N 23.88%. The elemental analyses were performed with PERKIN ELMER MODEL 2400 SERIES II. The CCDC number: 695533.

Refinement

The H atoms were found in a difference map, then placed in idealized positions (C—H 0.97 Å, N—H 0.86 Å), and refined using a riding model, with Uiso(H) = 1.2Ueq(C,N). Two cyclopentanone rings were treated as disordered between two conformations with the refined occupancies 0.533 (14):0.567 (14) and 0.661 (14):0.339 (14), respectively.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atomic numbering and 30% probability displacement ellipsoids. Only major parts of disordered rings are shown.

Crystal data

C11H18N4S Z = 2
Mr = 238.35 F(000) = 256
Triclinic, P1 Dx = 1.257 Mg m3
a = 6.0344 (19) Å Mo Kα radiation, λ = 0.71073 Å
b = 10.114 (3) Å Cell parameters from 1126 reflections
c = 11.137 (3) Å θ = 3.3–24.9°
α = 106.579 (5)° µ = 0.24 mm1
β = 96.897 (5)° T = 273 K
γ = 100.574 (5)° Block, colourless
V = 629.6 (3) Å3 0.12 × 0.08 × 0.06 mm

Data collection

Bruker SMART APEX diffractometer 2212 independent reflections
Radiation source: fine-focus sealed tube 1673 reflections with I > 2σ(I)
graphite Rint = 0.013
φ and ω scans θmax = 25.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −6→7
Tmin = 0.972, Tmax = 0.986 k = −12→9
3340 measured reflections l = −13→12

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042 H-atom parameters constrained
wR(F2) = 0.112 w = 1/[σ2(Fo2) + (0.0454P)2 + 0.1999P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
2212 reflections Δρmax = 0.16 e Å3
172 parameters Δρmin = −0.17 e Å3
53 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.009 (3)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate(isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 −0.52345 (11) 0.37097 (7) 0.62060 (6) 0.0680 (3)
N1 −0.1552 (3) 0.56488 (18) 0.63675 (17) 0.0545 (5)
H1 −0.2334 0.5908 0.5814 0.065*
N2 0.0700 (3) 0.63623 (19) 0.68996 (17) 0.0580 (5)
N3 −0.1013 (3) 0.42144 (18) 0.75435 (17) 0.0580 (5)
H3 0.0391 0.4685 0.7755 0.070*
N4 −0.1709 (3) 0.3132 (2) 0.8044 (2) 0.0690 (6)
C1 −0.2498 (4) 0.4543 (2) 0.6730 (2) 0.0509 (5)
C2 0.1520 (3) 0.7462 (2) 0.6622 (2) 0.0517 (5)
C3 0.3930 (4) 0.8296 (3) 0.7198 (3) 0.0774 (8)
H3A 0.4066 0.8764 0.8103 0.093*
H3B 0.5000 0.7683 0.7077 0.093*
C4 0.4395 (15) 0.9365 (9) 0.6511 (10) 0.074 (2) 0.661 (14)
H4A 0.5092 0.9002 0.5781 0.089* 0.661 (14)
H4B 0.5411 1.0238 0.7073 0.089* 0.661 (14)
C5 0.2064 (11) 0.9613 (7) 0.6089 (10) 0.073 (2) 0.661 (14)
H5A 0.2052 0.9934 0.5347 0.088* 0.661 (14)
H5B 0.1645 1.0312 0.6768 0.088* 0.661 (14)
C6 0.0426 (4) 0.8155 (2) 0.5770 (2) 0.0603 (6)
H6C −0.1083 0.8253 0.5943 0.072* 0.661 (14)
H6B 0.0283 0.7611 0.4881 0.072* 0.661 (14)
H6A −0.0701 0.8622 0.6154 0.072* 0.339 (14)
H6D −0.0317 0.7467 0.4952 0.072* 0.339 (14)
C4' 0.409 (4) 0.9642 (13) 0.6854 (17) 0.074 (2) 0.339 (14)
H4C 0.5632 0.9997 0.6742 0.089* 0.339 (14)
H4D 0.3675 1.0367 0.7512 0.089* 0.339 (14)
C5' 0.241 (2) 0.9226 (17) 0.5619 (16) 0.073 (2) 0.339 (14)
H5D 0.3090 0.8804 0.4900 0.088* 0.339 (14)
H5C 0.1901 1.0042 0.5496 0.088* 0.339 (14)
C7 −0.0131 (4) 0.2930 (2) 0.8792 (2) 0.0588 (6)
C8 0.2329 (4) 0.3678 (2) 0.9211 (2) 0.0607 (6)
H8C 0.2503 0.4631 0.9781 0.073* 0.467 (14)
H8B 0.3050 0.3725 0.8487 0.073* 0.467 (14)
H8A 0.2478 0.4691 0.9564 0.073* 0.533 (14)
H8D 0.3131 0.3502 0.8497 0.073* 0.533 (14)
C9' 0.335 (2) 0.2757 (11) 0.9903 (7) 0.075 (3) 0.467 (14)
H9C 0.4080 0.2125 0.9337 0.090* 0.467 (14)
H9D 0.4496 0.3352 1.0638 0.090* 0.467 (14)
C10' 0.1445 (17) 0.1908 (17) 1.0324 (14) 0.079 (3) 0.467 (14)
H10A 0.1068 0.2460 1.1107 0.095* 0.467 (14)
H10B 0.1815 0.1049 1.0429 0.095* 0.467 (14)
C11' −0.0457 (17) 0.1591 (6) 0.9191 (7) 0.070 (3) 0.467 (14)
H11C −0.1947 0.1388 0.9428 0.083* 0.467 (14)
H11D −0.0333 0.0784 0.8501 0.083* 0.467 (14)
C9 0.3302 (17) 0.3089 (6) 1.0216 (7) 0.0582 (18) 0.533 (14)
H9A 0.4817 0.2934 1.0116 0.070* 0.533 (14)
H9B 0.3374 0.3713 1.1070 0.070* 0.533 (14)
C10 0.1582 (12) 0.1699 (13) 0.9944 (14) 0.079 (3) 0.533 (14)
H10C 0.1655 0.1382 1.0689 0.095* 0.533 (14)
H10D 0.1894 0.0975 0.9242 0.095* 0.533 (14)
C11 −0.0769 (13) 0.1980 (11) 0.9599 (10) 0.066 (2) 0.533 (14)
H11A −0.1893 0.1116 0.9111 0.079* 0.533 (14)
H11B −0.1325 0.2467 1.0346 0.079* 0.533 (14)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0570 (4) 0.0775 (5) 0.0726 (4) −0.0016 (3) −0.0087 (3) 0.0472 (4)
N1 0.0521 (11) 0.0585 (11) 0.0601 (11) 0.0071 (9) −0.0029 (9) 0.0385 (9)
N2 0.0501 (11) 0.0654 (12) 0.0667 (12) 0.0089 (9) −0.0001 (9) 0.0407 (10)
N3 0.0523 (11) 0.0579 (11) 0.0695 (12) 0.0014 (9) −0.0062 (9) 0.0425 (10)
N4 0.0609 (12) 0.0639 (12) 0.0878 (14) −0.0038 (9) −0.0116 (11) 0.0541 (11)
C1 0.0573 (13) 0.0515 (12) 0.0478 (12) 0.0109 (10) 0.0021 (10) 0.0257 (10)
C2 0.0464 (12) 0.0609 (13) 0.0560 (13) 0.0100 (10) 0.0036 (10) 0.0348 (11)
C3 0.0524 (15) 0.0933 (19) 0.0922 (19) 0.0008 (13) −0.0100 (13) 0.0573 (16)
C4 0.056 (3) 0.070 (3) 0.095 (5) −0.001 (2) −0.002 (3) 0.040 (4)
C5 0.064 (3) 0.070 (3) 0.093 (6) 0.001 (3) −0.003 (3) 0.051 (3)
C6 0.0490 (13) 0.0655 (14) 0.0756 (15) 0.0063 (11) 0.0003 (11) 0.0450 (13)
C4' 0.056 (3) 0.070 (3) 0.095 (5) −0.001 (2) −0.002 (3) 0.040 (4)
C5' 0.064 (3) 0.070 (3) 0.093 (6) 0.001 (3) −0.003 (3) 0.051 (3)
C7 0.0535 (13) 0.0552 (13) 0.0716 (15) 0.0010 (10) −0.0045 (11) 0.0398 (12)
C8 0.0552 (14) 0.0628 (14) 0.0701 (15) 0.0056 (11) 0.0030 (11) 0.0386 (12)
C9' 0.067 (6) 0.066 (4) 0.091 (5) 0.010 (4) −0.020 (5) 0.038 (4)
C10' 0.082 (2) 0.082 (4) 0.077 (6) −0.002 (2) −0.014 (3) 0.056 (4)
C11' 0.059 (5) 0.060 (5) 0.105 (6) 0.008 (4) 0.004 (4) 0.058 (5)
C9 0.051 (4) 0.054 (3) 0.067 (3) −0.001 (3) −0.005 (3) 0.031 (3)
C10 0.082 (2) 0.082 (4) 0.077 (6) −0.002 (2) −0.014 (3) 0.056 (4)
C11 0.051 (3) 0.065 (4) 0.094 (4) 0.005 (3) −0.003 (3) 0.055 (4)

Geometric parameters (Å, °)

S1—C1 1.660 (2) C4'—H4D 0.9700
N1—C1 1.349 (3) C5'—H5D 0.9700
N1—N2 1.386 (2) C5'—H5C 0.9700
N1—H1 0.8600 C7—C8 1.488 (3)
N2—C2 1.268 (3) C7—C11 1.523 (4)
N3—C1 1.349 (3) C7—C11' 1.528 (4)
N3—N4 1.386 (2) C8—C9 1.518 (5)
N3—H3 0.8600 C8—C9' 1.532 (6)
N4—C7 1.273 (3) C8—H8C 0.9700
C2—C6 1.492 (3) C8—H8B 0.9700
C2—C3 1.502 (3) C8—H8A 0.9700
C3—C4 1.498 (5) C8—H8D 0.9700
C3—C4' 1.505 (7) C9'—C10' 1.507 (7)
C3—H3A 0.9700 C9'—H9C 0.9700
C3—H3B 0.9700 C9'—H9D 0.9700
C4—C5 1.517 (6) C10'—C11' 1.516 (7)
C4—H4A 0.9700 C10'—H10A 0.9700
C4—H4B 0.9700 C10'—H10B 0.9700
C5—C6 1.536 (5) C11'—H11C 0.9700
C5—H5A 0.9700 C11'—H11D 0.9700
C5—H5B 0.9700 C9—C10 1.513 (7)
C6—C5' 1.520 (7) C9—H9A 0.9700
C6—H6C 0.9700 C9—H9B 0.9700
C6—H6B 0.9700 C10—C11 1.523 (7)
C6—H6A 0.9700 C10—H10C 0.9700
C6—H6D 0.9700 C10—H10D 0.9700
C4'—C5' 1.509 (8) C11—H11A 0.9700
C4'—H4C 0.9700 C11—H11B 0.9700
C1—N1—N2 119.09 (16) C8—C7—C11 109.8 (3)
C1—N1—H1 120.5 N4—C7—C11' 121.1 (4)
N2—N1—H1 120.5 C8—C7—C11' 107.8 (4)
C2—N2—N1 118.56 (17) C11—C7—C11' 22.1 (4)
C1—N3—N4 121.17 (18) C7—C8—C9 106.2 (4)
C1—N3—H3 119.4 C7—C8—C9' 103.3 (5)
N4—N3—H3 119.4 C9—C8—C9' 15.73 (7)
C7—N4—N3 114.60 (18) C7—C8—H8C 111.1
N1—C1—N3 113.33 (19) C9—C8—H8C 96.0
N1—C1—S1 121.64 (15) C9'—C8—H8C 111.1
N3—C1—S1 125.03 (16) C7—C8—H8B 111.1
N2—C2—C6 129.81 (19) C9—C8—H8B 122.3
N2—C2—C3 120.75 (18) C9'—C8—H8B 111.1
C6—C2—C3 109.43 (18) H8C—C8—H8B 109.1
C4—C3—C2 105.4 (4) C7—C8—H8A 110.4
C4—C3—C4' 18.5 (10) C9—C8—H8A 110.6
C2—C3—C4' 104.6 (8) C9'—C8—H8A 125.1
C4—C3—H3A 110.7 H8C—C8—H8A 15.7
C2—C3—H3A 110.7 H8B—C8—H8A 95.6
C4'—C3—H3A 94.4 C7—C8—H8D 110.5
C4—C3—H3B 110.7 C9—C8—H8D 110.5
C2—C3—H3B 110.7 C9'—C8—H8D 97.9
C4'—C3—H3B 126.4 H8C—C8—H8D 120.9
H3A—C3—H3B 108.8 H8B—C8—H8D 14.4
C3—C4—C5 105.0 (6) H8A—C8—H8D 108.6
C3—C4—H4A 110.7 C10'—C9'—C8 108.7 (10)
C5—C4—H4A 110.7 C10'—C9'—H9C 110.0
C3—C4—H4B 110.7 C8—C9'—H9C 110.0
C5—C4—H4B 110.7 C10'—C9'—H9D 110.0
H4A—C4—H4B 108.8 C8—C9'—H9D 110.0
C4—C5—C6 104.0 (6) H9C—C9'—H9D 108.3
C4—C5—H5A 111.0 C10'—C9'—H9A 131.9
C6—C5—H5A 111.0 C8—C9'—H9A 117.9
C4—C5—H5B 111.0 H9C—C9'—H9A 65.5
C6—C5—H5B 111.0 H9D—C9'—H9A 43.5
H5A—C5—H5B 109.0 C10'—C9'—H9B 80.7
C2—C6—C5' 104.2 (7) C8—C9'—H9B 91.0
C2—C6—C5 104.2 (3) H9C—C9'—H9B 150.6
C5'—C6—C5 24.2 (6) H9D—C9'—H9B 43.3
C2—C6—H6C 110.9 H9A—C9'—H9B 86.8
C5'—C6—H6C 130.4 C9'—C10'—C11' 99.5 (13)
C5—C6—H6C 110.9 C9'—C10'—H10A 111.9
C2—C6—H6B 110.9 C11'—C10'—H10A 111.9
C5'—C6—H6B 89.0 C9'—C10'—H10B 111.9
C5—C6—H6B 110.9 C11'—C10'—H10B 111.9
H6C—C6—H6B 108.9 H10A—C10'—H10B 109.6
C2—C6—H6A 110.9 C10'—C11'—C7 105.3 (9)
C5'—C6—H6A 110.9 C10'—C11'—H11C 110.7
C5—C6—H6A 89.0 C7—C11'—H11C 110.7
H6C—C6—H6A 23.3 C10'—C11'—H11D 110.7
H6B—C6—H6A 126.6 C7—C11'—H11D 110.7
C2—C6—H6D 110.9 H11C—C11'—H11D 108.8
C5'—C6—H6D 110.9 C10—C9—C8 102.2 (8)
C5—C6—H6D 130.4 C10—C9—H9A 111.1
H6C—C6—H6D 88.2 C8—C9—H9A 111.4
H6B—C6—H6D 23.2 C10—C9—H9B 111.3
H6A—C6—H6D 108.9 C8—C9—H9B 111.4
C3—C4'—C5' 104.6 (11) H9A—C9—H9B 109.3
C3—C4'—H4C 110.8 C9—C10—C11 106.4 (11)
C5'—C4'—H4C 110.8 C9—C10—H10C 110.5
C3—C4'—H4D 110.8 C11—C10—H10C 110.5
C5'—C4'—H4D 110.8 C9—C10—H10D 110.5
H4C—C4'—H4D 108.9 C11—C10—H10D 110.5
C4'—C5'—C6 104.2 (12) H10C—C10—H10D 108.7
C4'—C5'—H5D 110.9 C7—C11—C10 98.5 (8)
C6—C5'—H5D 110.9 C7—C11—H11A 112.1
C4'—C5'—H5C 110.9 C10—C11—H11A 112.1
C6—C5'—H5C 110.9 C7—C11—H11B 112.1
H5D—C5'—H5C 108.9 C10—C11—H11B 112.1
N4—C7—C8 129.96 (18) H11A—C11—H11B 109.7
N4—C7—C11 119.3 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N3—H3···N2 0.86 2.17 2.558 (3) 108
N1—H1···S1i 0.86 2.70 3.547 (3) 170

Symmetry codes: (i) −x−1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2503).

References

  1. Bacchi, A., Bonini, A., Carcelli, M., Ferraro, F., Leporati, E., Pelizzi, C. & Pelizzi, G. (1996). J. Chem. Soc. Dalton. Trans. pp. 2699–2705.
  2. Chantrapromma, S., Razak, I. A., Fun, H.-K., Karalai, C., Zhang, H., Xie, F.-X., Tian, Y.-P., Ma, W., Zhang, Y.-H. & Ni, S.-S. (2001). Acta Cryst. C57, 289–290. [DOI] [PubMed]
  3. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809009325/cv2503sup1.cif

e-65-0o818-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009325/cv2503Isup2.hkl

e-65-0o818-Isup2.hkl (108.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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