Abstract
In the title compound, [Zn(C6H6N4)2(H2O)2](C16H8O8), the ZnII atom, located on an inversion centre, is coordinated by two aqua and two bidentate biimidizole ligands, resulting in a slightly distorted octahedral ZnO2N4 geometry. The four N atoms from the two biimidizole ligands lie in the equatorial plane and the two aqua O atoms lie in the axial sites. The biphenyltetracarboxylate anion also lies on an inversion centre. The ZnII complex cation and the anion are held together by N—H⋯O hydrogen bonds, forming a zigzag chain along [2
1]. The chains are further connected by water molecules via O—H⋯O hydrogen bonds.
Related literature
For general background, see: Hagrman et al. (1999 ▶); Jia et al. (2007 ▶); Kortz et al. (2003 ▶).
Experimental
Crystal data
[Zn(C6H6N4)2(H2O)2](C16H8O8)
M r = 697.92
Triclinic,
a = 8.2133 (16) Å
b = 9.810 (2) Å
c = 10.498 (2) Å
α = 63.72 (3)°
β = 68.00 (3)°
γ = 83.85 (3)°
V = 701.4 (2) Å3
Z = 1
Mo Kα radiation
μ = 0.95 mm−1
T = 293 K
0.12 × 0.10 × 0.08 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.894, T max = 0.928
5074 measured reflections
2674 independent reflections
2579 reflections with I > 2σ(I)
R int = 0.022
Refinement
R[F 2 > 2σ(F 2)] = 0.036
wR(F 2) = 0.096
S = 1.00
2674 reflections
218 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.28 e Å−3
Δρmin = −0.22 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008022/is2385sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008022/is2385Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Zn1—O1W | 2.135 (2) |
| Zn1—N3 | 2.1419 (18) |
| Zn1—N2 | 2.1625 (19) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯O1i | 0.88 | 1.94 | 2.802 (3) | 169 |
| N4—H4A⋯O2i | 0.90 | 1.89 | 2.791 (3) | 176 |
| O1W—H1W⋯O4ii | 0.81 | 1.90 | 2.683 (2) | 162 |
| O1W—H2W⋯O2iii | 0.79 | 1.98 | 2.751 (3) | 164 |
| O3—H3A⋯O1 | 0.93 (3) | 1.52 (3) | 2.434 (3) | 165 (4) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by the Foundation of the Education Committee of Fujian Province (JA08103), and the Foundation of Daiichi Pharmaceutical (Beijing) Co, Ltd. (No. 06B004).
supplementary crystallographic information
Comment
Design and construction of metal-organic frameworks (MOFs) have attracted considerable attention in recent years, not only for their intriguing structural motifs but also for their potential applications in the areas of catalysis, separation, gas absorption, molecular recognition, nonlinear optics and magnetochemistry (Hagrman et al., 1999; Jia et al., 2007; Kortz et al., 2003). In this paper, we report the structure of the title compound, (I).
As shown in Fig. 1, the ZnII atom (site symmetry 1) is bonded to two aqua and two bidentate biimidizole ligands, to result in a slightly distorted octahedral ZnO2N4 geometry for the central metal. The ZnII atom lies on an inversion centre, as a consequence which the asymmetric unit comprises a half of the molecule. The four nitrogen atoms belonging to two biimidizole ligands lie in the equatorial plane and the two aqua oxygen atoms lie in the axial coordination sites. The bonds around Zn is listed in Table 1. The 3,3',4,4'-biphenyl tetracarboxylate acts as negative electron balance. With two kinds of hydrogen bonds of N4—H4A···O2 and N1—H1A···O1, a zigzag chain is formed. Furthermore, a 3-D frameworks is constructed with O1W—H2W···O2 and O1W—H1W···O4 along the c axis, shown in Fig. 2.
Experimental
All chemicals and Teflon-lined stainless steel autoclave were purchased from Jinan Henghua Sci. & Tec. Co. Ltd. A mixture of 3,3',4,4'-biphenyl tetracarboxylic acid (0.1 mmol), zinc(II) sulfate (0.1 mmol), and diimdazole (0.1 mmol) in 10 ml distilled water sealed in a 25 ml Teflon-lined stainless steel autoclave was kept at 433 K for three days. Colorless crystals suitable for X-ray were obtained.
Refinement
Atom H3A on O3 was located in a difference Fourier map and refined with an O—H distance [0.93 (1) Å] restraint. O-bound H atoms except H3A and N-bound H atoms were located in a difference Fourier map and were constrained as riding, with Uiso(H) = 1.2Ueq(O or N). Other H atoms were placed in calculated positions (C—H = 0.93 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular components of the title compound, drawn with 30% probability displacement ellipsoids for the non-hydrogen atoms.
Fig. 2.
A packing diagram of the title compound formed with the hydrogen bonds (dashed lines).
Crystal data
| [Zn(C6H6N4)2(H2O)2](C16H8O8) | Z = 1 |
| Mr = 697.92 | F(000) = 358 |
| Triclinic, P1 | Dx = 1.652 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.2133 (16) Å | Cell parameters from 2674 reflections |
| b = 9.810 (2) Å | θ = 3.4–26.0° |
| c = 10.498 (2) Å | µ = 0.95 mm−1 |
| α = 63.72 (3)° | T = 293 K |
| β = 68.00 (3)° | Block, colorless |
| γ = 83.85 (3)° | 0.12 × 0.10 × 0.08 mm |
| V = 701.4 (2) Å3 |
Data collection
| Bruker APEXII CCD diffractometer | 2674 independent reflections |
| Radiation source: fine-focus sealed tube | 2579 reflections with I > 2σ(I) |
| graphite | Rint = 0.022 |
| φ and ω scans | θmax = 26.0°, θmin = 3.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −9→10 |
| Tmin = 0.894, Tmax = 0.928 | k = −12→12 |
| 5074 measured reflections | l = −12→11 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.00 | w = 1/[σ2(Fo2) + (0.052P)2 + 0.4235P] where P = (Fo2 + 2Fc2)/3 |
| 2674 reflections | (Δ/σ)max = 0.018 |
| 218 parameters | Δρmax = 0.28 e Å−3 |
| 1 restraint | Δρmin = −0.22 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 0.5000 | 0.5000 | 0.0000 | 0.03706 (14) | |
| C1 | 0.8917 (3) | −0.0165 (3) | 0.6897 (3) | 0.0359 (5) | |
| C2 | 0.7565 (3) | 0.0726 (2) | 0.6220 (2) | 0.0299 (4) | |
| C3 | 0.6742 (3) | −0.0082 (2) | 0.5790 (2) | 0.0317 (4) | |
| H3 | 0.7113 | −0.1040 | 0.5887 | 0.038* | |
| C4 | 0.5400 (3) | 0.0464 (2) | 0.5224 (2) | 0.0300 (4) | |
| C5 | 0.4858 (3) | 0.1890 (3) | 0.5114 (3) | 0.0399 (5) | |
| H5 | 0.3941 | 0.2288 | 0.4771 | 0.048* | |
| C6 | 0.5668 (3) | 0.2719 (2) | 0.5509 (3) | 0.0392 (5) | |
| H6 | 0.5280 | 0.3673 | 0.5415 | 0.047* | |
| C7 | 0.7037 (3) | 0.2197 (2) | 0.6041 (2) | 0.0305 (4) | |
| C8 | 0.7779 (3) | 0.3350 (3) | 0.6322 (3) | 0.0375 (5) | |
| C9 | 0.7614 (3) | 0.3778 (2) | 0.1372 (2) | 0.0328 (4) | |
| C10 | 0.7227 (3) | 0.2594 (2) | 0.1042 (2) | 0.0336 (5) | |
| C11 | 0.5985 (3) | 0.1497 (3) | 0.0235 (3) | 0.0436 (6) | |
| H19 | 0.5263 | 0.1307 | −0.0179 | 0.052* | |
| C12 | 0.7149 (4) | 0.0538 (3) | 0.0759 (3) | 0.0473 (6) | |
| H20 | 0.7368 | −0.0416 | 0.0771 | 0.057* | |
| C13 | 0.8671 (3) | 0.5175 (3) | 0.2050 (3) | 0.0440 (6) | |
| H21 | 0.9329 | 0.5524 | 0.2414 | 0.053* | |
| C14 | 0.7403 (3) | 0.5901 (3) | 0.1520 (3) | 0.0436 (6) | |
| H22 | 0.7041 | 0.6853 | 0.1456 | 0.052* | |
| N1 | 0.7933 (3) | 0.1248 (2) | 0.1265 (2) | 0.0406 (4) | |
| H1A | 0.8659 | 0.0821 | 0.1742 | 0.049* | |
| N2 | 0.6044 (3) | 0.2788 (2) | 0.0414 (2) | 0.0366 (4) | |
| N3 | 0.6732 (2) | 0.5025 (2) | 0.1091 (2) | 0.0372 (4) | |
| N4 | 0.8794 (3) | 0.3831 (2) | 0.1946 (2) | 0.0402 (4) | |
| H4A | 0.9538 | 0.3110 | 0.2211 | 0.048* | |
| O1 | 0.9901 (3) | 0.0489 (2) | 0.7164 (3) | 0.0592 (5) | |
| O2 | 0.9025 (2) | −0.15120 (19) | 0.7137 (2) | 0.0528 (5) | |
| O3 | 0.9163 (3) | 0.3100 (2) | 0.6670 (3) | 0.0576 (5) | |
| O4 | 0.7063 (3) | 0.4532 (2) | 0.6186 (2) | 0.0536 (5) | |
| O1W | 0.2826 (2) | 0.4101 (2) | 0.2126 (2) | 0.0517 (5) | |
| H1W | 0.2680 | 0.4378 | 0.2782 | 0.078* | |
| H2W | 0.2367 | 0.3277 | 0.2477 | 0.078* | |
| H3A | 0.962 (5) | 0.217 (2) | 0.673 (5) | 0.100 (13)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0416 (2) | 0.0294 (2) | 0.0549 (3) | 0.00961 (15) | −0.03317 (18) | −0.01971 (17) |
| C1 | 0.0359 (11) | 0.0351 (11) | 0.0469 (12) | 0.0071 (9) | −0.0249 (10) | −0.0197 (10) |
| C2 | 0.0321 (10) | 0.0270 (10) | 0.0351 (10) | 0.0038 (8) | −0.0184 (9) | −0.0129 (8) |
| C3 | 0.0346 (11) | 0.0260 (10) | 0.0424 (11) | 0.0073 (8) | −0.0229 (9) | −0.0155 (9) |
| C4 | 0.0355 (11) | 0.0254 (10) | 0.0351 (10) | 0.0042 (8) | −0.0201 (9) | −0.0130 (8) |
| C5 | 0.0489 (13) | 0.0323 (11) | 0.0604 (14) | 0.0156 (10) | −0.0411 (12) | −0.0242 (11) |
| C6 | 0.0502 (13) | 0.0280 (11) | 0.0542 (13) | 0.0122 (10) | −0.0320 (11) | −0.0220 (10) |
| C7 | 0.0349 (11) | 0.0284 (10) | 0.0343 (10) | 0.0029 (8) | −0.0174 (9) | −0.0152 (8) |
| C8 | 0.0452 (13) | 0.0319 (11) | 0.0446 (12) | 0.0026 (9) | −0.0226 (10) | −0.0195 (10) |
| C9 | 0.0317 (10) | 0.0327 (11) | 0.0402 (11) | 0.0070 (8) | −0.0200 (9) | −0.0166 (9) |
| C10 | 0.0349 (11) | 0.0291 (10) | 0.0396 (11) | 0.0059 (8) | −0.0182 (9) | −0.0145 (9) |
| C11 | 0.0566 (15) | 0.0321 (11) | 0.0559 (14) | 0.0036 (10) | −0.0337 (12) | −0.0201 (11) |
| C12 | 0.0608 (16) | 0.0309 (12) | 0.0636 (16) | 0.0106 (11) | −0.0330 (13) | −0.0253 (11) |
| C13 | 0.0460 (13) | 0.0461 (14) | 0.0579 (15) | 0.0050 (11) | −0.0316 (12) | −0.0281 (12) |
| C14 | 0.0490 (14) | 0.0380 (12) | 0.0640 (15) | 0.0105 (10) | −0.0332 (12) | −0.0308 (12) |
| N1 | 0.0456 (11) | 0.0326 (10) | 0.0545 (12) | 0.0137 (8) | −0.0324 (10) | −0.0192 (9) |
| N2 | 0.0418 (10) | 0.0300 (9) | 0.0489 (11) | 0.0083 (8) | −0.0282 (9) | −0.0181 (8) |
| N3 | 0.0394 (10) | 0.0347 (10) | 0.0532 (11) | 0.0105 (8) | −0.0302 (9) | −0.0233 (9) |
| N4 | 0.0394 (10) | 0.0393 (10) | 0.0552 (12) | 0.0115 (8) | −0.0315 (9) | −0.0223 (9) |
| O1 | 0.0659 (12) | 0.0518 (11) | 0.1051 (16) | 0.0251 (9) | −0.0670 (12) | −0.0479 (11) |
| O2 | 0.0539 (11) | 0.0330 (9) | 0.0920 (14) | 0.0141 (8) | −0.0539 (11) | −0.0248 (9) |
| O3 | 0.0620 (12) | 0.0441 (10) | 0.1003 (15) | 0.0128 (9) | −0.0549 (12) | −0.0412 (11) |
| O4 | 0.0706 (12) | 0.0399 (10) | 0.0807 (13) | 0.0161 (9) | −0.0472 (11) | −0.0387 (9) |
| O1W | 0.0637 (12) | 0.0427 (9) | 0.0564 (11) | −0.0089 (8) | −0.0204 (9) | −0.0268 (8) |
Geometric parameters (Å, °)
| Zn1—O1W | 2.135 (2) | C8—O3 | 1.288 (3) |
| Zn1—O1Wi | 2.135 (2) | C9—N3 | 1.326 (3) |
| Zn1—N3i | 2.1419 (18) | C9—N4 | 1.334 (3) |
| Zn1—N3 | 2.1419 (18) | C9—C10 | 1.445 (3) |
| Zn1—N2i | 2.1625 (19) | C10—N2 | 1.321 (3) |
| Zn1—N2 | 2.1625 (19) | C10—N1 | 1.341 (3) |
| C1—O2 | 1.231 (3) | C11—C12 | 1.358 (4) |
| C1—O1 | 1.258 (3) | C11—N2 | 1.368 (3) |
| C1—C2 | 1.528 (3) | C11—H19 | 0.9300 |
| C2—C3 | 1.395 (3) | C12—N1 | 1.364 (3) |
| C2—C7 | 1.411 (3) | C12—H20 | 0.9300 |
| C3—C4 | 1.392 (3) | C13—C14 | 1.351 (4) |
| C3—H3 | 0.9300 | C13—N4 | 1.361 (3) |
| C4—C5 | 1.390 (3) | C13—H21 | 0.9300 |
| C4—C4ii | 1.490 (4) | C14—N3 | 1.370 (3) |
| C5—C6 | 1.376 (3) | C14—H22 | 0.9300 |
| C5—H5 | 0.9300 | N1—H1A | 0.8755 |
| C6—C7 | 1.391 (3) | N4—H4A | 0.9008 |
| C6—H6 | 0.9300 | O3—H3A | 0.93 (3) |
| C7—C8 | 1.522 (3) | O1W—H1W | 0.8119 |
| C8—O4 | 1.217 (3) | O1W—H2W | 0.7930 |
| O1W—Zn1—O1Wi | 180.00 (10) | O4—C8—C7 | 119.0 (2) |
| O1W—Zn1—N3i | 88.19 (8) | O3—C8—C7 | 120.8 (2) |
| O1Wi—Zn1—N3i | 91.81 (8) | N3—C9—N4 | 111.41 (19) |
| O1W—Zn1—N3 | 91.81 (8) | N3—C9—C10 | 119.57 (19) |
| O1Wi—Zn1—N3 | 88.19 (8) | N4—C9—C10 | 129.0 (2) |
| N3i—Zn1—N3 | 180.0 | N2—C10—N1 | 111.27 (19) |
| O1W—Zn1—N2i | 87.51 (8) | N2—C10—C9 | 119.67 (19) |
| O1Wi—Zn1—N2i | 92.49 (8) | N1—C10—C9 | 129.1 (2) |
| N3i—Zn1—N2i | 79.56 (7) | C12—C11—N2 | 109.2 (2) |
| N3—Zn1—N2i | 100.44 (7) | C12—C11—H19 | 125.4 |
| O1W—Zn1—N2 | 92.49 (8) | N2—C11—H19 | 125.4 |
| O1Wi—Zn1—N2 | 87.51 (8) | C11—C12—N1 | 106.6 (2) |
| N3i—Zn1—N2 | 100.44 (7) | C11—C12—H20 | 126.7 |
| N3—Zn1—N2 | 79.56 (7) | N1—C12—H20 | 126.7 |
| N2i—Zn1—N2 | 180.0 | C14—C13—N4 | 106.3 (2) |
| O2—C1—O1 | 122.0 (2) | C14—C13—H21 | 126.8 |
| O2—C1—C2 | 117.98 (19) | N4—C13—H21 | 126.8 |
| O1—C1—C2 | 120.0 (2) | C13—C14—N3 | 109.8 (2) |
| C3—C2—C7 | 118.34 (19) | C13—C14—H22 | 125.1 |
| C3—C2—C1 | 113.56 (18) | N3—C14—H22 | 125.1 |
| C7—C2—C1 | 128.06 (18) | C10—N1—C12 | 107.05 (19) |
| C4—C3—C2 | 123.86 (19) | C10—N1—H1A | 128.5 |
| C4—C3—H3 | 118.1 | C12—N1—H1A | 124.1 |
| C2—C3—H3 | 118.1 | C10—N2—C11 | 105.86 (19) |
| C5—C4—C3 | 116.66 (19) | C10—N2—Zn1 | 110.26 (14) |
| C5—C4—C4ii | 122.8 (2) | C11—N2—Zn1 | 143.84 (16) |
| C3—C4—C4ii | 120.6 (2) | C9—N3—C14 | 105.05 (18) |
| C6—C5—C4 | 120.6 (2) | C9—N3—Zn1 | 110.75 (14) |
| C6—C5—H5 | 119.7 | C14—N3—Zn1 | 143.92 (16) |
| C4—C5—H5 | 119.7 | C9—N4—C13 | 107.4 (2) |
| C5—C6—C7 | 123.1 (2) | C9—N4—H4A | 126.2 |
| C5—C6—H6 | 118.5 | C13—N4—H4A | 126.4 |
| C7—C6—H6 | 118.5 | C8—O3—H3A | 113 (3) |
| C6—C7—C2 | 117.43 (18) | Zn1—O1W—H1W | 121.7 |
| C6—C7—C8 | 113.31 (18) | Zn1—O1W—H2W | 121.9 |
| C2—C7—C8 | 129.25 (19) | H1W—O1W—H2W | 111.7 |
| O4—C8—O3 | 120.1 (2) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y, −z+1.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···O1iii | 0.88 | 1.94 | 2.802 (3) | 169 |
| N4—H4A···O2iii | 0.90 | 1.89 | 2.791 (3) | 176 |
| O1W—H1W···O4iv | 0.81 | 1.90 | 2.683 (2) | 162 |
| O1W—H2W···O2ii | 0.79 | 1.98 | 2.751 (3) | 164 |
| O3—H3A···O1 | 0.93 (3) | 1.52 (3) | 2.434 (3) | 165 (4) |
Symmetry codes: (iii) −x+2, −y, −z+1; (iv) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS2385).
References
- Bruker (2001). SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2004). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
- Hagrman, P. J., Hagrman, D. & Zubieta, J. (1999). Angew. Chem. Int. Ed.38, 2638–2684. [DOI] [PubMed]
- Jia, H.-P., Li, W., Ju, Z.-F. & Zhang, J. (2007). Inorg. Chem.10, 265–268.
- Kortz, U., Hamzeh, S. S. & Nasser, N. A. (2003). Chem. Eur. J.9, 2945–2952.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008022/is2385sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008022/is2385Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


