Abstract
The title compound, C13H15Cl2N3, also known as penconazole, crystallizes as a racemate. The dihedral angle between the benzene and triazole rings is 24.96 (13)°. In the crystal structure, molecules are linked into chains running parallel to the c axis by intermolecular C—H⋯N hydrogen-bonding interactions.
Related literature
For the synthesis and toxicity of the title compound, see: Maier et al. (1987 ▶); Worthing (1987 ▶); Tao et al. (2003 ▶). For the crystal structure of a related compound, see: Peeters et al. (1993 ▶).
Experimental
Crystal data
C13H15Cl2N3
M r = 284.18
Monoclinic,
a = 25.083 (8) Å
b = 10.763 (2) Å
c = 11.206 (3) Å
β = 105.654 (3)°
V = 2913.1 (13) Å3
Z = 8
Cu Kα radiation
μ = 3.89 mm−1
T = 297 K
0.23 × 0.20 × 0.16 mm
Data collection
Siemens AED diffractometer
Absorption correction: empirical (refined from ΔF) (DIFABS; Walker & Stuart, 1983 ▶) T min = 0.432, T max = 0.538
2737 measured reflections
2611 independent reflections
1183 reflections with I > 2σ(I)
R int = 0.060
3 standard reflections every 100 reflections intensity decay: 0.01%
Refinement
R[F 2 > 2σ(F 2)] = 0.056
wR(F 2) = 0.127
S = 0.99
2611 reflections
163 parameters
H-atom parameters constrained
Δρmax = 0.34 e Å−3
Δρmin = −0.27 e Å−3
Data collection: AED (Belletti et al., 1993 ▶); cell refinement: AED; data reduction: AED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and SCHAKAL (Keller, 1997 ▶); software used to prepare material for publication: SHELXL97 and PARST95 (Nardelli, 1995 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007120/hg2483sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007120/hg2483Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C3—H3A⋯N3i | 0.97 | 2.52 | 3.489 (4) | 174 |
Symmetry code: (i) .
Acknowledgments
Financial support from the Universitá Politecnica delle Marche and the Universitá degli Studi di Parma is gratefully acknowledged.
supplementary crystallographic information
Comment
The synthesis of the title compound, I, commonly known as penconazole, was described years ago (Maier et al., 1987). Due to its ability to inhibit the development of fungi by interfering with sterol biosynthesis of their cell membranes, this product was introduced as an agriculture systemic fungicide affecting cucurbits, grapes, pome fruits and vegetables. The advantages of this compound is its low toxicity: acute oral dose (LD50) of 2125 mg/kg for rats (Worthing, 1987). More recently, penconazole was prepared by condensation of 2-(2,4-dichlorophenyl)-1-pentanole with 1,2,4-triazole (Tao et al., 2003), but this method also leads to the formation of 1-(1H-1,3,4-triazol-1-yl)-2-(2,4-dichlorophenyl)-pentane (II) as a by-product. In repeating this reaction, our purpose was the determination of the crystal structure of the desired compound I and the evaluation of the percentage of the by-product II.
The title compound (Fig. 1) crystallizes as a racemate. The triazole ring is substantially planar (maximum deviation from planarity 0.006 (3) Å for atom C2) and forms a dihedral angle of 24.96 (13)° with the benzene ring. The N—N (1.351 (3) Å) and C—N (mean value 1.328 (4) Å) bond lengths within the triazole ring are comparable with those observed in 6-[(4-chlorophenyl)(1H-1,2,4-triazol-1-yl)methyl]-1-methyl-1H-benzotriazole (vorozole; Peeters et al., 1993) and suggest electron delocalization over the ring. In the crystal structure, an intermolecular C—H···N hydrogen bonding interaction (Table 1) link the molecules into chains running parallel to the c axis (Fig. 2).
Experimental
The title compound was prepared according to the literature reports (Tao et al., 2003). This method afforded compounds I and II in a 93:3 ratio. The two compounds were separated by chromatography on SiO2 column eluting with cyclohexane/ethyl acetate (9:1 v/v). Crystals of the title compound suitable for X-ray analysis were obtained on slow evaporation of an n-pentane solution (m. p. 60–61°C). IR data, ν, cm-1: 3060, 1597, 1448, 760, 746, 700. 1H-NMR, δ in CDCL3: 0.87 (t, 3H, –CH2CH3), 1.23 (sextet, 2H, -CH2CH3), 2.6–2.8 (m,2H, –CHCH2CH2CH3), 3.78 (1H, quintet, –CH2CHCH2-), 4.34 (d, -CH2CH<), 7.23 (1H, speudo-q, H-5, J=8.3 Hz, J=2.2 Hz), 7.38 (1H, d, H-3, J=2.2 Hz), 7.71 (s, 1H, triazolyl-H-3), 7.89 (s,1H, triazolyl-H-5). MS, Calcd for C13H15Cl2N3, 284.2; Found. M (%): 250 (12.72), 248 (36.93), 161 (63.69), 159 (100); no molecular ion peak was observed; the highest peaks are those corresponding to the loss of a chlorine atom. The 1H-NMR spectrum of compound II shows a singlet at δ = 7.89 corresponding to the two equivalent H atoms of the 1,3,4-triazol-1-yl ring, the other part of the spectrum is strictly similar to that of compound I. Melting points were determined by an electrochemical apparatus and were uncorrected. 1H-NMR spectra were recorded on a Varian Gemini 200 MHz. IR spectra were recorded in the solid state with a Perkin-Elmer MGX1 spectrophotometer equipped with Spectra Tech. Mass spectra were recorded with a Carlo Erba QMD 1000 mass spectrometer in positive EI mode.
Refinement
All H atoms were positioned geometrically with C—H = 0.93–0.98 Å, and refined using a riding model approximation with Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(C) for methyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.
Fig. 2.
Crystal packing of the title compound viewed approximately along the b axis. Intermolecular C—H···N hydrogen bonds are shown as dashed lines.
Fig. 3.
The structures of (I) and (II).
Crystal data
C13H15Cl2N3 | F(000) = 1184 |
Mr = 284.18 | Dx = 1.296 Mg m−3 |
Monoclinic, C2/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -C 2yc | Cell parameters from 48 reflections |
a = 25.083 (8) Å | θ = 18.4–42.5° |
b = 10.763 (2) Å | µ = 3.89 mm−1 |
c = 11.206 (3) Å | T = 297 K |
β = 105.654 (3)° | Block, colourless |
V = 2913.1 (13) Å3 | 0.23 × 0.20 × 0.16 mm |
Z = 8 |
Data collection
Siemens AED diffractometer | 1183 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.060 |
graphite | θmax = 67.9°, θmin = 3.7° |
θ/2θ scans | h = −29→28 |
Absorption correction: empirical (using intensity measurements) (DIFABS; Walker & Stuart, 1983) | k = −2→12 |
Tmin = 0.432, Tmax = 0.538 | l = −5→13 |
2737 measured reflections | 3 standard reflections every 100 reflections |
2611 independent reflections | intensity decay: 0.01% |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0456P)2] where P = (Fo2 + 2Fc2)/3 |
2611 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
Special details
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.08070 (6) | 0.51687 (9) | 0.93474 (12) | 0.1422 (6) | |
Cl2 | 0.08744 (5) | 0.18168 (11) | 1.28987 (10) | 0.1305 (5) | |
N1 | 0.22774 (10) | 0.3780 (2) | 0.7443 (2) | 0.0595 (7) | |
N2 | 0.24356 (12) | 0.3032 (2) | 0.6633 (2) | 0.0757 (8) | |
N3 | 0.25582 (12) | 0.5043 (2) | 0.6210 (3) | 0.0815 (9) | |
C1 | 0.25951 (15) | 0.3839 (3) | 0.5932 (3) | 0.0808 (10) | |
H1 | 0.2728 | 0.3591 | 0.5270 | 0.097* | |
C2 | 0.23549 (13) | 0.4960 (3) | 0.7196 (3) | 0.0714 (9) | |
H2 | 0.2279 | 0.5634 | 0.7644 | 0.086* | |
C3 | 0.20829 (13) | 0.3285 (3) | 0.8460 (3) | 0.0638 (8) | |
H3A | 0.2230 | 0.3790 | 0.9192 | 0.077* | |
H3B | 0.2226 | 0.2449 | 0.8646 | 0.077* | |
C4 | 0.14554 (13) | 0.3253 (3) | 0.8180 (3) | 0.0666 (8) | |
H4 | 0.1313 | 0.4086 | 0.7921 | 0.080* | |
C5 | 0.13060 (12) | 0.2927 (3) | 0.9380 (3) | 0.0648 (8) | |
C6 | 0.10164 (15) | 0.3713 (3) | 0.9946 (3) | 0.0807 (10) | |
C7 | 0.08852 (16) | 0.3387 (3) | 1.1047 (4) | 0.0927 (11) | |
H7 | 0.0695 | 0.3937 | 1.1424 | 0.111* | |
C8 | 0.10441 (15) | 0.2235 (4) | 1.1558 (3) | 0.0790 (10) | |
C9 | 0.13257 (14) | 0.1450 (3) | 1.1013 (3) | 0.0787 (10) | |
H9 | 0.1435 | 0.0680 | 1.1372 | 0.094* | |
C10 | 0.14543 (13) | 0.1774 (3) | 0.9930 (3) | 0.0724 (9) | |
H10 | 0.1643 | 0.1211 | 0.9562 | 0.087* | |
C11 | 0.11930 (14) | 0.2323 (3) | 0.7113 (3) | 0.0830 (10) | |
H11A | 0.1315 | 0.2537 | 0.6389 | 0.100* | |
H11B | 0.1326 | 0.1492 | 0.7368 | 0.100* | |
C12 | 0.05814 (16) | 0.2321 (4) | 0.6773 (3) | 0.1057 (13) | |
H12A | 0.0450 | 0.3152 | 0.6514 | 0.127* | |
H12B | 0.0460 | 0.2115 | 0.7501 | 0.127* | |
C13 | 0.03234 (16) | 0.1433 (4) | 0.5764 (4) | 0.1191 (15) | |
H131 | −0.0072 | 0.1482 | 0.5589 | 0.179* | |
H132 | 0.0442 | 0.0604 | 0.6020 | 0.179* | |
H133 | 0.0434 | 0.1640 | 0.5032 | 0.179* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.2339 (15) | 0.0687 (6) | 0.1461 (10) | 0.0447 (8) | 0.0895 (10) | 0.0118 (7) |
Cl2 | 0.1620 (11) | 0.1516 (11) | 0.0905 (7) | −0.0169 (8) | 0.0558 (7) | 0.0066 (7) |
N1 | 0.0728 (18) | 0.0384 (12) | 0.0602 (15) | −0.0030 (12) | 0.0061 (13) | −0.0050 (12) |
N2 | 0.103 (2) | 0.0486 (14) | 0.0760 (18) | −0.0110 (15) | 0.0248 (16) | −0.0087 (14) |
N3 | 0.101 (2) | 0.0588 (17) | 0.081 (2) | −0.0131 (15) | 0.0183 (18) | 0.0088 (15) |
C1 | 0.111 (3) | 0.0566 (19) | 0.075 (2) | −0.016 (2) | 0.026 (2) | −0.0020 (18) |
C2 | 0.084 (3) | 0.0447 (17) | 0.079 (2) | −0.0054 (16) | 0.0105 (19) | −0.0048 (17) |
C3 | 0.076 (2) | 0.0485 (16) | 0.0612 (19) | −0.0073 (15) | 0.0083 (16) | 0.0029 (15) |
C4 | 0.072 (2) | 0.0545 (18) | 0.067 (2) | 0.0001 (16) | 0.0072 (17) | 0.0065 (16) |
C5 | 0.064 (2) | 0.0564 (18) | 0.066 (2) | −0.0038 (16) | 0.0049 (16) | −0.0013 (16) |
C6 | 0.105 (3) | 0.057 (2) | 0.082 (2) | −0.003 (2) | 0.027 (2) | −0.0030 (19) |
C7 | 0.109 (3) | 0.079 (3) | 0.094 (3) | −0.006 (2) | 0.035 (2) | −0.019 (2) |
C8 | 0.086 (3) | 0.089 (3) | 0.064 (2) | −0.015 (2) | 0.0244 (19) | 0.002 (2) |
C9 | 0.079 (2) | 0.074 (2) | 0.079 (2) | −0.0020 (19) | 0.014 (2) | 0.019 (2) |
C10 | 0.073 (2) | 0.066 (2) | 0.076 (2) | 0.0035 (17) | 0.0154 (18) | 0.0082 (18) |
C11 | 0.084 (3) | 0.094 (3) | 0.060 (2) | −0.011 (2) | 0.0009 (18) | −0.0074 (19) |
C12 | 0.096 (3) | 0.121 (3) | 0.091 (3) | −0.026 (3) | 0.011 (2) | −0.011 (3) |
C13 | 0.095 (3) | 0.140 (4) | 0.100 (3) | −0.016 (3) | −0.013 (2) | −0.030 (3) |
Geometric parameters (Å, °)
Cl1—C6 | 1.729 (3) | C5—C10 | 1.391 (4) |
Cl2—C8 | 1.728 (3) | C6—C7 | 1.404 (5) |
N1—C2 | 1.326 (3) | C7—C8 | 1.379 (4) |
N1—N2 | 1.351 (3) | C7—H7 | 0.9300 |
N1—C3 | 1.457 (3) | C8—C9 | 1.348 (4) |
N2—C1 | 1.304 (4) | C9—C10 | 1.382 (4) |
N3—C2 | 1.339 (4) | C9—H9 | 0.9300 |
N3—C1 | 1.342 (4) | C10—H10 | 0.9300 |
C1—H1 | 0.9300 | C11—C12 | 1.478 (4) |
C2—H2 | 0.9300 | C11—H11A | 0.9700 |
C3—C4 | 1.520 (4) | C11—H11B | 0.9700 |
C3—H3A | 0.9700 | C12—C13 | 1.488 (5) |
C3—H3B | 0.9700 | C12—H12A | 0.9700 |
C4—C5 | 1.530 (4) | C12—H12B | 0.9700 |
C4—C11 | 1.562 (4) | C13—H131 | 0.9600 |
C4—H4 | 0.9800 | C13—H132 | 0.9600 |
C5—C6 | 1.377 (4) | C13—H133 | 0.9600 |
C2—N1—N2 | 110.2 (3) | C8—C7—H7 | 120.7 |
C2—N1—C3 | 127.8 (3) | C6—C7—H7 | 120.7 |
N2—N1—C3 | 122.0 (2) | C9—C8—C7 | 120.2 (3) |
C1—N2—N1 | 101.6 (2) | C9—C8—Cl2 | 120.9 (3) |
C2—N3—C1 | 101.1 (3) | C7—C8—Cl2 | 118.9 (3) |
N2—C1—N3 | 116.8 (3) | C8—C9—C10 | 121.0 (3) |
N2—C1—H1 | 121.6 | C8—C9—H9 | 119.5 |
N3—C1—H1 | 121.6 | C10—C9—H9 | 119.5 |
N1—C2—N3 | 110.2 (3) | C9—C10—C5 | 121.1 (3) |
N1—C2—H2 | 124.9 | C9—C10—H10 | 119.5 |
N3—C2—H2 | 124.9 | C5—C10—H10 | 119.5 |
N1—C3—C4 | 113.2 (2) | C12—C11—C4 | 113.1 (3) |
N1—C3—H3A | 108.9 | C12—C11—H11A | 109.0 |
C4—C3—H3A | 108.9 | C4—C11—H11A | 109.0 |
N1—C3—H3B | 108.9 | C12—C11—H11B | 109.0 |
C4—C3—H3B | 108.9 | C4—C11—H11B | 109.0 |
H3A—C3—H3B | 107.8 | H11A—C11—H11B | 107.8 |
C3—C4—C5 | 108.0 (2) | C11—C12—C13 | 113.9 (3) |
C3—C4—C11 | 111.8 (3) | C11—C12—H12A | 108.8 |
C5—C4—C11 | 111.9 (2) | C13—C12—H12A | 108.8 |
C3—C4—H4 | 108.3 | C11—C12—H12B | 108.8 |
C5—C4—H4 | 108.3 | C13—C12—H12B | 108.8 |
C11—C4—H4 | 108.3 | H12A—C12—H12B | 107.7 |
C6—C5—C10 | 117.1 (3) | C12—C13—H131 | 109.5 |
C6—C5—C4 | 123.3 (3) | C12—C13—H132 | 109.5 |
C10—C5—C4 | 119.6 (3) | H131—C13—H132 | 109.5 |
C5—C6—C7 | 122.0 (3) | C12—C13—H133 | 109.5 |
C5—C6—Cl1 | 121.4 (3) | H131—C13—H133 | 109.5 |
C7—C6—Cl1 | 116.7 (3) | H132—C13—H133 | 109.5 |
C8—C7—C6 | 118.7 (3) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···N3i | 0.97 | 2.52 | 3.489 (4) | 174 |
Symmetry codes: (i) x, −y+1, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2483).
References
- Belletti, D., Cantoni, A. & Pasquinelli, G. (1993). AED Internal Report 1/93. Centro di Studio per la Strutturistica Diffrattometrica del CNR, Parma, Italy.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007120/hg2483sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007120/hg2483Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report