Abstract
The title molecule, C19H23NO4, was synthesized by the reaction of benzaldehyde, ethyl acetoacetate and NH4HCO3. The dihydropyridine ring adopts a flattened boat conformation and the plane of the base of the boat forms a dihedral angle of 88.78 (9)° with the phenyl ring. The packing is stabilized by strong intermolecular N—H⋯O and weak intermolecular C—H⋯O hydrogen bonds.
Related literature
For general background, see: Cutshall et al. (2002 ▶); Henry (2004 ▶). For the crystal structure of the related compound diethyl 2,6-dimethyl-4-styryl-1,4-dihydropyridine-3,5-dicarboxylate, see: Wang et al., (2007 ▶). For hydrogen bond definitions, see: Desiraju & Steiner (1999 ▶).
Experimental
Crystal data
C19H23NO4
M r = 329.38
Monoclinic,
a = 9.7502 (12) Å
b = 7.3854 (9) Å
c = 24.326 (2) Å
β = 92.567 (1)°
V = 1749.9 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.09 mm−1
T = 298 K
0.50 × 0.46 × 0.32 mm
Data collection
Siemens SMART 1000 CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.973
8718 measured reflections
3084 independent reflections
1989 reflections with I > 2σ(I)
R int = 0.033
Refinement
R[F 2 > 2σ(F 2)] = 0.045
wR(F 2) = 0.131
S = 1.01
3084 reflections
225 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.22 e Å−3
Δρmin = −0.18 e Å−3
Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809009118/fb2141sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009118/fb2141Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1⋯O4i | 0.81 (3) | 2.19 (3) | 2.986 (3) | 168 (3) |
C3—H3⋯O1 | 0.98 | 2.35 | 2.733 (3) | 103 |
C3—H3⋯O4 | 0.98 | 2.43 | 2.816 (3) | 103 |
C7—H7⋯O1 | 0.93 | 2.55 | 3.169 (3) | 124 |
C12—H12C⋯O2 | 0.96 | 2.27 | 2.841 (3) | 116 |
C15—H15A⋯O3 | 0.96 | 2.42 | 2.762 (3) | 101 |
C8—H8⋯O2ii | 0.93 | 2.51 | 3.387 (3) | 157 |
Symmetry codes: (i) ; (ii)
.
Acknowledgments
The authors acknowledge the support of the Natural Science Foundation of the College of Life Science, Ningxia University (grant No. 081040).
supplementary crystallographic information
Comment
The development of new methods for the synthesis of substituted pyridines is a motive for the current study. Substituted pyridines attract the interest because of their presence in numerous natural products along with a wide spectrum of their physiological activities (Cutshall et al., 2002). Pyridine derivatives and their complexes have been studied for their fungicidal and antibacterial effects, as well as antiviral drugs (Henry, 2004).
In this paper, we present the structure of diethyl 2,6-dimethyl-4-phenyl-1,4-dihydropyridine-3,5-dicarboxylate (Fig. 1).
The bond lengths and angles are normal and comparable to those observed in the reported diethyl 2,6-dimethyl-4-styryl-1,4-dihydropyridine-3,5-dicarboxylate (Wang et al., 2007).
In the crystal structure, the dihydropyridine ring adopts a flattened boat conformation and the plane of the base of the boat (C1/C2/C4/C5) contains 88.78 (9)° with the phenyl ring. There are present strong (Desiraju & Steiner, 1999) intermolecular N—H···O hydrogen bonds (Tab. 1) that link the molecules into chains propagated in the direction [010].
Experimental
Fresh benzaldehyde (6 mmol), ethyl acetoacetate (6 mmol) and NH4HCO3 (6 mmol) were mixed in a 50 ml flask. After the mixture had been stirred for 3 h at 293 K, the crude product was obtained. The title crystals were obtained by recrystallization from ethanol, affording the title compound as a yellow block crystalline solid. Elemental analysis: calculated for C19H23NO4: C 69.28, H 7.04, N 4.25 weight%; found: C 69.29, H 7.85, N 4.29 weight%.
Refinement
All the hydrogens were discernible in the difference electron density map. Except for the secondary-amine H atom whose coordinates were refined freely the remaining hydrogens were situated into the idealized positions and were refined within a riding model approximation: Cmethyl—H = 0.96, Cmethylene—H 0.97, Cmethine = 0.98 Å. Uiso(H) = 1.2 UeqCmethylene/Cmethine/Nsecondary-amine; Uiso(H) = 1.5 Ueq(Cmethyl). The methyl groups were allowed to rotate during the refinement.
Figures
Fig. 1.
The title molecule with the atomic numbering scheme. The displacement ellipsoids are shown at the 30% probability level.
Crystal data
C19H23NO4 | F(000) = 704 |
Mr = 329.38 | Dx = 1.250 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P2ybc | Cell parameters from 2342 reflections |
a = 9.7502 (12) Å | θ = 2.6–27.7° |
b = 7.3854 (9) Å | µ = 0.09 mm−1 |
c = 24.326 (2) Å | T = 298 K |
β = 92.567 (1)° | Block, yellow |
V = 1749.9 (3) Å3 | 0.50 × 0.46 × 0.32 mm |
Z = 4 |
Data collection
Siemens SMART 1000 CCD diffractometer | 3084 independent reflections |
Radiation source: fine-focus sealed tube | 1989 reflections with I > 2σ(I) |
graphite | Rint = 0.033 |
φ and ω scans | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→11 |
Tmin = 0.958, Tmax = 0.973 | k = −8→8 |
8718 measured reflections | l = −28→28 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.131 | w = 1/[σ2(Fo2) + (0.0521P)2 + 0.8294P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
3084 reflections | Δρmax = 0.22 e Å−3 |
225 parameters | Δρmin = −0.18 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
85 constraints | Extinction coefficient: 0.0027 (8) |
Primary atom site location: structure-invariant direct methods |
Special details
Experimental. The sample was cut out from a larger slab crystal. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
N1 | 0.3363 (2) | 1.1267 (3) | 0.55024 (8) | 0.0405 (5) | |
H1 | 0.327 (3) | 1.230 (4) | 0.5394 (10) | 0.049* | |
O1 | 0.57917 (16) | 0.6975 (2) | 0.65667 (7) | 0.0476 (5) | |
O2 | 0.66266 (19) | 0.9781 (3) | 0.66376 (8) | 0.0619 (6) | |
O3 | 0.14967 (17) | 0.6965 (2) | 0.46314 (6) | 0.0468 (5) | |
O4 | 0.2624 (2) | 0.5071 (2) | 0.51964 (7) | 0.0572 (5) | |
C1 | 0.4405 (2) | 1.0939 (3) | 0.58911 (9) | 0.0376 (6) | |
C2 | 0.4587 (2) | 0.9233 (3) | 0.60794 (9) | 0.0332 (5) | |
C3 | 0.3494 (2) | 0.7821 (3) | 0.59344 (8) | 0.0324 (5) | |
H3 | 0.3937 | 0.6630 | 0.5927 | 0.039* | |
C4 | 0.2846 (2) | 0.8200 (3) | 0.53680 (8) | 0.0318 (5) | |
C5 | 0.2721 (2) | 0.9937 (3) | 0.51905 (9) | 0.0356 (5) | |
C6 | 0.2424 (2) | 0.7790 (3) | 0.63775 (8) | 0.0323 (5) | |
C7 | 0.2655 (2) | 0.6791 (4) | 0.68509 (10) | 0.0469 (6) | |
H7 | 0.3436 | 0.6070 | 0.6888 | 0.056* | |
C8 | 0.1752 (3) | 0.6838 (4) | 0.72719 (10) | 0.0565 (8) | |
H8 | 0.1939 | 0.6175 | 0.7592 | 0.068* | |
C9 | 0.0577 (3) | 0.7862 (4) | 0.72192 (10) | 0.0538 (7) | |
H9 | −0.0035 | 0.7891 | 0.7501 | 0.065* | |
C10 | 0.0315 (3) | 0.8837 (4) | 0.67494 (10) | 0.0497 (7) | |
H10 | −0.0483 | 0.9524 | 0.6710 | 0.060* | |
C11 | 0.1231 (2) | 0.8805 (3) | 0.63333 (10) | 0.0411 (6) | |
H11 | 0.1043 | 0.9481 | 0.6016 | 0.049* | |
C12 | 0.5222 (3) | 1.2590 (3) | 0.60462 (11) | 0.0547 (7) | |
H12A | 0.4892 | 1.3092 | 0.6379 | 0.082* | |
H12B | 0.5126 | 1.3469 | 0.5756 | 0.082* | |
H12C | 0.6172 | 1.2268 | 0.6102 | 0.082* | |
C13 | 0.5757 (2) | 0.8760 (3) | 0.64511 (9) | 0.0387 (6) | |
C14 | 0.2330 (2) | 0.6604 (3) | 0.50671 (9) | 0.0345 (5) | |
C15 | 0.1963 (3) | 1.0650 (3) | 0.46890 (10) | 0.0508 (7) | |
H15A | 0.2214 | 0.9965 | 0.4373 | 0.076* | |
H15B | 0.2196 | 1.1900 | 0.4638 | 0.076* | |
H15C | 0.0993 | 1.0543 | 0.4733 | 0.076* | |
C16 | 0.6846 (3) | 0.6355 (4) | 0.69600 (11) | 0.0582 (8) | |
H16A | 0.7690 | 0.7009 | 0.6902 | 0.070* | |
H16B | 0.7019 | 0.5079 | 0.6898 | 0.070* | |
C17 | 0.6457 (4) | 0.6618 (5) | 0.75336 (12) | 0.0819 (10) | |
H17A | 0.6362 | 0.7888 | 0.7606 | 0.123* | |
H17B | 0.7156 | 0.6118 | 0.7779 | 0.123* | |
H17C | 0.5601 | 0.6018 | 0.7589 | 0.123* | |
C18 | 0.1024 (3) | 0.5457 (3) | 0.42944 (10) | 0.0497 (7) | |
H18A | 0.0477 | 0.4640 | 0.4507 | 0.060* | |
H18B | 0.1800 | 0.4791 | 0.4162 | 0.060* | |
C19 | 0.0187 (4) | 0.6213 (4) | 0.38256 (12) | 0.0757 (10) | |
H19A | −0.0562 | 0.6897 | 0.3962 | 0.114* | |
H19B | −0.0167 | 0.5242 | 0.3598 | 0.114* | |
H19C | 0.0747 | 0.6988 | 0.3612 | 0.114* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0507 (13) | 0.0230 (10) | 0.0470 (12) | −0.0013 (10) | −0.0054 (10) | 0.0019 (9) |
O1 | 0.0410 (10) | 0.0462 (11) | 0.0542 (11) | 0.0029 (8) | −0.0141 (8) | 0.0051 (8) |
O2 | 0.0573 (12) | 0.0616 (12) | 0.0647 (12) | −0.0180 (10) | −0.0213 (10) | 0.0014 (10) |
O3 | 0.0648 (11) | 0.0324 (9) | 0.0415 (9) | −0.0024 (8) | −0.0184 (8) | −0.0023 (7) |
O4 | 0.0876 (14) | 0.0259 (9) | 0.0555 (11) | 0.0040 (9) | −0.0245 (10) | 0.0001 (8) |
C1 | 0.0402 (14) | 0.0340 (14) | 0.0385 (13) | −0.0032 (11) | 0.0009 (11) | −0.0053 (10) |
C2 | 0.0344 (12) | 0.0335 (13) | 0.0316 (11) | −0.0016 (10) | 0.0000 (10) | −0.0018 (10) |
C3 | 0.0371 (13) | 0.0252 (12) | 0.0345 (12) | −0.0002 (10) | −0.0037 (10) | 0.0014 (9) |
C4 | 0.0373 (13) | 0.0273 (12) | 0.0305 (11) | 0.0001 (10) | −0.0014 (10) | 0.0010 (9) |
C5 | 0.0425 (14) | 0.0316 (12) | 0.0327 (12) | 0.0017 (11) | 0.0009 (10) | 0.0003 (10) |
C6 | 0.0356 (13) | 0.0285 (12) | 0.0323 (12) | −0.0057 (10) | −0.0052 (9) | 0.0015 (9) |
C7 | 0.0388 (14) | 0.0544 (17) | 0.0468 (15) | −0.0019 (12) | −0.0055 (12) | 0.0163 (12) |
C8 | 0.0498 (16) | 0.078 (2) | 0.0414 (15) | −0.0118 (15) | −0.0034 (13) | 0.0210 (14) |
C9 | 0.0481 (16) | 0.0715 (19) | 0.0424 (15) | −0.0113 (15) | 0.0079 (12) | 0.0010 (14) |
C10 | 0.0471 (15) | 0.0519 (16) | 0.0507 (16) | 0.0061 (13) | 0.0075 (13) | 0.0032 (13) |
C11 | 0.0452 (14) | 0.0398 (14) | 0.0382 (13) | 0.0031 (12) | 0.0006 (11) | 0.0069 (11) |
C12 | 0.0603 (17) | 0.0389 (15) | 0.0641 (17) | −0.0110 (13) | −0.0057 (14) | −0.0053 (13) |
C13 | 0.0356 (13) | 0.0459 (15) | 0.0347 (13) | −0.0038 (12) | 0.0019 (10) | −0.0027 (11) |
C14 | 0.0421 (13) | 0.0304 (13) | 0.0309 (12) | −0.0003 (11) | −0.0005 (10) | 0.0006 (10) |
C15 | 0.0710 (18) | 0.0355 (14) | 0.0446 (15) | 0.0015 (13) | −0.0099 (13) | 0.0069 (11) |
C16 | 0.0473 (16) | 0.0625 (19) | 0.0629 (18) | 0.0087 (14) | −0.0179 (13) | 0.0062 (14) |
C17 | 0.091 (2) | 0.098 (3) | 0.0554 (19) | 0.010 (2) | −0.0085 (17) | 0.0202 (18) |
C18 | 0.0689 (18) | 0.0353 (14) | 0.0436 (14) | −0.0102 (13) | −0.0112 (13) | −0.0056 (11) |
C19 | 0.105 (3) | 0.0559 (18) | 0.0620 (19) | −0.0032 (18) | −0.0383 (18) | −0.0064 (15) |
Geometric parameters (Å, °)
N1—C5 | 1.375 (3) | C8—H8 | 0.9300 |
N1—C1 | 1.378 (3) | C9—C10 | 1.365 (4) |
N1—H1 | 0.81 (3) | C9—H9 | 0.9300 |
O1—C13 | 1.348 (3) | C10—C11 | 1.380 (3) |
O1—C16 | 1.447 (3) | C10—H10 | 0.9300 |
O2—C13 | 1.208 (3) | C11—H11 | 0.9300 |
O3—C14 | 1.333 (3) | C12—H12A | 0.9600 |
O3—C18 | 1.445 (3) | C12—H12B | 0.9600 |
O4—C14 | 1.206 (3) | C12—H12C | 0.9600 |
C1—C2 | 1.349 (3) | C15—H15A | 0.9600 |
C1—C12 | 1.495 (3) | C15—H15B | 0.9600 |
C2—C13 | 1.466 (3) | C15—H15C | 0.9600 |
C2—C3 | 1.522 (3) | C16—C17 | 1.475 (4) |
C3—C4 | 1.516 (3) | C16—H16A | 0.9700 |
C3—C6 | 1.533 (3) | C16—H16B | 0.9700 |
C3—H3 | 0.9800 | C17—H17A | 0.9600 |
C4—C5 | 1.357 (3) | C17—H17B | 0.9600 |
C4—C14 | 1.464 (3) | C17—H17C | 0.9600 |
C5—C15 | 1.493 (3) | C18—C19 | 1.482 (4) |
C6—C7 | 1.378 (3) | C18—H18A | 0.9700 |
C6—C11 | 1.384 (3) | C18—H18B | 0.9700 |
C7—C8 | 1.381 (3) | C19—H19A | 0.9600 |
C7—H7 | 0.9300 | C19—H19B | 0.9600 |
C8—C9 | 1.374 (4) | C19—H19C | 0.9600 |
C5—N1—C1 | 123.83 (19) | C1—C12—H12B | 109.5 |
C5—N1—H1 | 116.7 (19) | H12A—C12—H12B | 109.5 |
C1—N1—H1 | 117.3 (19) | C1—C12—H12C | 109.5 |
C13—O1—C16 | 117.3 (2) | H12A—C12—H12C | 109.5 |
C14—O3—C18 | 117.68 (17) | H12B—C12—H12C | 109.5 |
C2—C1—N1 | 118.6 (2) | O2—C13—O1 | 121.4 (2) |
C2—C1—C12 | 128.0 (2) | O2—C13—C2 | 126.6 (2) |
N1—C1—C12 | 113.4 (2) | O1—C13—C2 | 111.9 (2) |
C1—C2—C13 | 121.2 (2) | O4—C14—O3 | 121.6 (2) |
C1—C2—C3 | 118.8 (2) | O4—C14—C4 | 123.6 (2) |
C13—C2—C3 | 119.83 (19) | O3—C14—C4 | 114.84 (19) |
C4—C3—C2 | 110.05 (17) | C5—C15—H15A | 109.5 |
C4—C3—C6 | 111.88 (17) | C5—C15—H15B | 109.5 |
C2—C3—C6 | 109.81 (17) | H15A—C15—H15B | 109.5 |
C4—C3—H3 | 108.3 | C5—C15—H15C | 109.5 |
C2—C3—H3 | 108.3 | H15A—C15—H15C | 109.5 |
C6—C3—H3 | 108.3 | H15B—C15—H15C | 109.5 |
C5—C4—C14 | 125.3 (2) | O1—C16—C17 | 112.2 (2) |
C5—C4—C3 | 119.46 (19) | O1—C16—H16A | 109.2 |
C14—C4—C3 | 115.16 (18) | C17—C16—H16A | 109.2 |
C4—C5—N1 | 117.9 (2) | O1—C16—H16B | 109.2 |
C4—C5—C15 | 128.8 (2) | C17—C16—H16B | 109.2 |
N1—C5—C15 | 113.3 (2) | H16A—C16—H16B | 107.9 |
C7—C6—C11 | 117.4 (2) | C16—C17—H17A | 109.5 |
C7—C6—C3 | 120.3 (2) | C16—C17—H17B | 109.5 |
C11—C6—C3 | 122.23 (19) | H17A—C17—H17B | 109.5 |
C6—C7—C8 | 121.4 (2) | C16—C17—H17C | 109.5 |
C6—C7—H7 | 119.3 | H17A—C17—H17C | 109.5 |
C8—C7—H7 | 119.3 | H17B—C17—H17C | 109.5 |
C9—C8—C7 | 120.1 (2) | O3—C18—C19 | 107.3 (2) |
C9—C8—H8 | 119.9 | O3—C18—H18A | 110.3 |
C7—C8—H8 | 119.9 | C19—C18—H18A | 110.3 |
C10—C9—C8 | 119.5 (2) | O3—C18—H18B | 110.3 |
C10—C9—H9 | 120.2 | C19—C18—H18B | 110.3 |
C8—C9—H9 | 120.2 | H18A—C18—H18B | 108.5 |
C9—C10—C11 | 120.1 (2) | C18—C19—H19A | 109.5 |
C9—C10—H10 | 119.9 | C18—C19—H19B | 109.5 |
C11—C10—H10 | 119.9 | H19A—C19—H19B | 109.5 |
C10—C11—C6 | 121.4 (2) | C18—C19—H19C | 109.5 |
C10—C11—H11 | 119.3 | H19A—C19—H19C | 109.5 |
C6—C11—H11 | 119.3 | H19B—C19—H19C | 109.5 |
C1—C12—H12A | 109.5 |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O4i | 0.81 (3) | 2.19 (3) | 2.986 (3) | 168 (3) |
C3—H3···O1 | 0.98 | 2.35 | 2.733 (3) | 103 |
C3—H3···O4 | 0.98 | 2.43 | 2.816 (3) | 103 |
C7—H7···O1 | 0.93 | 2.55 | 3.169 (3) | 124 |
C12—H12C···O2 | 0.96 | 2.27 | 2.841 (3) | 116 |
C15—H15A···O3 | 0.96 | 2.42 | 2.762 (3) | 101 |
C8—H8···O2ii | 0.93 | 2.51 | 3.387 (3) | 157 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y−1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FB2141).
References
- Cutshall, N. S., Kucera, K. A., Ursion, R., Latham, J. & Ihle, N. C. (2002). Bioorg. Med. Chem. Lett.12, 1517–1520. [DOI] [PubMed]
- Desiraju, G. R. & Steiner, T. (1999). The Weak Hydrogen Bond In Structural Chemistry and Biology, p. 13. New York: Oxford University Press Inc.
- Henry, G. D. (2004). Tetrahedron, 60, 6043–6061.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.
- Wang, J. P., Du, M. J., Fu, Y. J., Wang, Y. J., Li, N. & Zheng, A. X. (2007). Chin. J. Synth. Chem.1, 42–45.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809009118/fb2141sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009118/fb2141Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report