Abstract
The title compound, C8H10O5·C2H3N3S·H2O, was synthesized by the reaction of 2-amino-1,3,4-thiadiazole with norcantharidin. The crystal structure is stabilized by N—H⋯O, N—H⋯N, O—H⋯O and O—H⋯N hydrogen bonds. In addition, weak π–π interactions are observed between symmetry-related thiadiazole ring systems [centroid–centroid distance = 3.9110 (3) Å, interplanar spacing = 3.4845 Å].
Related literature
7-Oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride (norcantharidin) is a lower toxicity anticancer drug, see: Shimi & Zaki (1982 ▶).
Experimental
Crystal data
C8H10O5·C2H3N3S·H2O
M r = 305.31
Monoclinic,
a = 5.7678 (5) Å
b = 18.4267 (15) Å
c = 12.7546 (11) Å
β = 101.336 (6)°
V = 1329.1 (2) Å3
Z = 4
Mo Kα radiation
μ = 0.27 mm−1
T = 296 K
0.30 × 0.16 × 0.09 mm
Data collection
Bruker APEXII area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.949, T max = 0.977
10820 measured reflections
2995 independent reflections
2026 reflections with I > 2σ(I)
R int = 0.040
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.133
S = 1.05
2995 reflections
187 parameters
3 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.30 e Å−3
Δρmin = −0.29 e Å−3
Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021825/at2800sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021825/at2800Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1A⋯O4i | 0.86 | 2.11 | 2.930 (3) | 160 |
N1—H1C⋯N3ii | 0.86 | 2.15 | 2.994 (3) | 166 |
N1—H1C⋯N2ii | 0.86 | 2.69 | 3.519 (3) | 161 |
O2—H2A⋯O1Wiii | 0.82 | 1.81 | 2.626 (2) | 176 |
O5—H5B⋯N2iv | 0.82 | 1.85 | 2.664 (2) | 172 |
O1W—H1WA⋯O3v | 0.859 (17) | 1.910 (17) | 2.766 (2) | 175 (3) |
O1W—H1WB⋯O4vi | 0.819 (17) | 2.51 (3) | 3.151 (3) | 137 (3) |
O1W—H1WB⋯O1vi | 0.819 (17) | 2.55 (3) | 3.061 (3) | 122 (3) |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
; (v)
; (vi)
.
Acknowledgments
The authors thank the Natural Science Foundation of Zhejiang Province, China (grant No. Y407301) for financial support.
supplementary crystallographic information
Comment
7-Oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride (norcantharidin) derived from cantharidin is a lower toxicity anticancer drug (Shimi & Zaki, 1982). The title compound was synthesized by the reaction of 2-amino-1,3,4-thiadiazole with 7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride (norcantharidin). In this paper, we reports its structure.
X-ray crystallography measurement confirmed the molecular structure and the atom connectivity for the title compound (Fig. 1). The crystal structure is stabilized by N—H···O, N—H···N, O—H···O and O—H···N hydrogen bonds (Table 1). Further, weak π–π interactions are observed between symmetry related thiadiazole ring systems [centroid-centroid distance of 3.9110 (3)Å and interplanar spacing of 3.4845 Å].
Experimental
7-Oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride and 2-amino-1,3,4-thiadiazole were dissolved in tetrahydrofuran and the mixture was stirred for 6 h at room temperature. The clear solution was left undisturbed for days to give colourless crystals of the compound.
Refinement
The H atoms bonded to C and N atoms were positioned geometrically and refined using ariding model [C—H =0.93- 0.98 Å, N—H = 0.86 Å and O—H = 0.82 Å and Uiso(H) = 1.2 or 1.5Ueq(C,N,O)]. The H atoms of the water molecule were located in a difference Fourier maps and refined with O—H distance restraints of 0.85 (2) and Uiso(H) = 1.5Ueq(O).
Figures
Fig. 1.
A view of the molecule of (I) showing the atom-labelling scheme with displacement ellipsoids drawn at the 30% probability.
Crystal data
C8H10O5·C2H3N3S·H2O | F(000) = 640 |
Mr = 305.31 | Dx = 1.526 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1905 reflections |
a = 5.7678 (5) Å | θ = 2.0–27.6° |
b = 18.4267 (15) Å | µ = 0.27 mm−1 |
c = 12.7546 (11) Å | T = 296 K |
β = 101.336 (6)° | Block, colourless |
V = 1329.1 (2) Å3 | 0.30 × 0.16 × 0.09 mm |
Z = 4 |
Data collection
Bruker APEXII area-detector diffractometer | 2995 independent reflections |
Radiation source: fine-focus sealed tube | 2026 reflections with I > 2σ(I) |
graphite | Rint = 0.040 |
ω scans | θmax = 27.6°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −6→7 |
Tmin = 0.949, Tmax = 0.977 | k = −24→23 |
10820 measured reflections | l = −16→15 |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.062P)2 + 0.3174P] where P = (Fo2 + 2Fc2)/3 |
2995 reflections | (Δ/σ)max = 0.001 |
187 parameters | Δρmax = 0.30 e Å−3 |
3 restraints | Δρmin = −0.29 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
C1 | −0.2976 (5) | 0.05357 (14) | 0.3265 (2) | 0.0537 (7) | |
H1B | −0.3880 | 0.0947 | 0.3053 | 0.064* | |
C2 | −0.0094 (4) | −0.03835 (13) | 0.37115 (19) | 0.0401 (6) | |
C3 | −0.7049 (4) | −0.14263 (12) | −0.02775 (19) | 0.0371 (5) | |
H3A | −0.7478 | −0.1570 | −0.1031 | 0.044* | |
C4 | −0.4729 (4) | −0.10527 (12) | 0.11367 (19) | 0.0378 (5) | |
H4A | −0.3228 | −0.0881 | 0.1563 | 0.045* | |
C5 | −0.5597 (4) | −0.17663 (11) | 0.15371 (18) | 0.0308 (5) | |
H5A | −0.6555 | −0.1649 | 0.2069 | 0.037* | |
C6 | −0.7289 (4) | −0.20482 (11) | 0.05131 (18) | 0.0320 (5) | |
H6A | −0.8916 | −0.2080 | 0.0630 | 0.038* | |
C7 | −0.8388 (4) | −0.07593 (13) | −0.0002 (2) | 0.0436 (6) | |
H7A | −0.9932 | −0.0888 | 0.0135 | 0.052* | |
H7B | −0.8573 | −0.0399 | −0.0566 | 0.052* | |
C8 | −0.6732 (4) | −0.04919 (12) | 0.1016 (2) | 0.0451 (6) | |
H8A | −0.7506 | −0.0499 | 0.1626 | 0.054* | |
H8B | −0.6158 | −0.0006 | 0.0925 | 0.054* | |
C9 | −0.3734 (4) | −0.23059 (12) | 0.20304 (18) | 0.0339 (5) | |
C10 | −0.6556 (4) | −0.27519 (12) | 0.00717 (19) | 0.0357 (5) | |
S1 | −0.00230 (12) | 0.04890 (3) | 0.32282 (6) | 0.0514 (2) | |
N1 | 0.1766 (3) | −0.08184 (12) | 0.39063 (18) | 0.0534 (6) | |
H1A | 0.1631 | −0.1250 | 0.4145 | 0.064* | |
H1C | 0.3110 | −0.0670 | 0.3794 | 0.064* | |
N2 | −0.2197 (3) | −0.05840 (10) | 0.38689 (17) | 0.0431 (5) | |
N3 | −0.3854 (4) | −0.00394 (11) | 0.36078 (19) | 0.0511 (6) | |
O1 | −0.4621 (3) | −0.12182 (8) | 0.00484 (13) | 0.0399 (4) | |
O1W | 0.3491 (3) | 0.19399 (12) | 0.19534 (16) | 0.0573 (5) | |
O2 | −0.1540 (3) | −0.20904 (9) | 0.21051 (15) | 0.0470 (5) | |
H2A | −0.0641 | −0.2405 | 0.2405 | 0.071* | |
O3 | −0.4251 (3) | −0.28854 (9) | 0.23715 (14) | 0.0453 (4) | |
O4 | −0.4568 (3) | −0.28772 (9) | −0.00388 (16) | 0.0527 (5) | |
O5 | −0.8343 (3) | −0.31955 (9) | −0.02355 (17) | 0.0575 (5) | |
H5B | −0.7870 | −0.3568 | −0.0474 | 0.086* | |
H1WA | 0.213 (4) | 0.1986 (18) | 0.212 (2) | 0.086* | |
H1WB | 0.317 (5) | 0.2024 (19) | 0.1311 (15) | 0.086* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0577 (16) | 0.0398 (14) | 0.064 (2) | 0.0017 (11) | 0.0119 (14) | 0.0069 (13) |
C2 | 0.0431 (13) | 0.0412 (13) | 0.0358 (14) | −0.0098 (10) | 0.0075 (10) | −0.0022 (10) |
C3 | 0.0419 (13) | 0.0369 (12) | 0.0311 (13) | 0.0077 (9) | 0.0038 (10) | −0.0009 (10) |
C4 | 0.0383 (12) | 0.0342 (12) | 0.0394 (14) | −0.0035 (9) | 0.0041 (10) | 0.0000 (10) |
C5 | 0.0310 (11) | 0.0334 (11) | 0.0289 (12) | 0.0019 (8) | 0.0081 (9) | 0.0004 (9) |
C6 | 0.0280 (11) | 0.0316 (11) | 0.0371 (14) | 0.0013 (8) | 0.0081 (9) | −0.0036 (9) |
C7 | 0.0443 (13) | 0.0368 (12) | 0.0486 (16) | 0.0118 (10) | 0.0062 (11) | 0.0015 (11) |
C8 | 0.0606 (16) | 0.0306 (12) | 0.0448 (16) | 0.0032 (10) | 0.0119 (12) | −0.0033 (11) |
C9 | 0.0339 (12) | 0.0390 (12) | 0.0300 (13) | 0.0015 (9) | 0.0094 (9) | −0.0002 (10) |
C10 | 0.0366 (13) | 0.0334 (12) | 0.0365 (14) | 0.0016 (9) | 0.0058 (10) | −0.0027 (9) |
S1 | 0.0575 (4) | 0.0399 (4) | 0.0583 (5) | −0.0095 (3) | 0.0150 (3) | 0.0073 (3) |
N1 | 0.0475 (12) | 0.0419 (12) | 0.0697 (17) | −0.0015 (9) | 0.0089 (11) | 0.0107 (11) |
N2 | 0.0455 (11) | 0.0354 (10) | 0.0480 (13) | −0.0044 (8) | 0.0085 (9) | 0.0048 (9) |
N3 | 0.0462 (12) | 0.0434 (12) | 0.0625 (15) | 0.0023 (9) | 0.0083 (11) | 0.0072 (11) |
O1 | 0.0417 (9) | 0.0391 (9) | 0.0425 (10) | 0.0032 (7) | 0.0170 (7) | 0.0082 (7) |
O1W | 0.0381 (10) | 0.0837 (14) | 0.0524 (12) | −0.0079 (9) | 0.0140 (9) | −0.0121 (11) |
O2 | 0.0315 (9) | 0.0499 (10) | 0.0589 (12) | 0.0004 (7) | 0.0068 (8) | 0.0103 (8) |
O3 | 0.0374 (9) | 0.0435 (9) | 0.0558 (12) | 0.0049 (7) | 0.0108 (8) | 0.0171 (8) |
O4 | 0.0406 (10) | 0.0447 (10) | 0.0747 (14) | 0.0032 (7) | 0.0163 (9) | −0.0214 (9) |
O5 | 0.0411 (10) | 0.0362 (9) | 0.0954 (16) | −0.0057 (7) | 0.0137 (9) | −0.0213 (10) |
Geometric parameters (Å, °)
C1—N3 | 1.287 (3) | C6—H6A | 0.9800 |
C1—S1 | 1.715 (3) | C7—C8 | 1.534 (3) |
C1—H1B | 0.9300 | C7—H7A | 0.9700 |
C2—N2 | 1.320 (3) | C7—H7B | 0.9700 |
C2—N1 | 1.323 (3) | C8—H8A | 0.9700 |
C2—S1 | 1.725 (2) | C8—H8B | 0.9700 |
C3—O1 | 1.433 (3) | C9—O3 | 1.212 (3) |
C3—C7 | 1.529 (3) | C9—O2 | 1.311 (3) |
C3—C6 | 1.550 (3) | C10—O4 | 1.205 (3) |
C3—H3A | 0.9800 | C10—O5 | 1.313 (3) |
C4—O1 | 1.434 (3) | N1—H1A | 0.8600 |
C4—C5 | 1.530 (3) | N1—H1C | 0.8600 |
C4—C8 | 1.535 (3) | N2—N3 | 1.381 (3) |
C4—H4A | 0.9800 | O1W—H1WA | 0.859 (17) |
C5—C9 | 1.508 (3) | O1W—H1WB | 0.819 (17) |
C5—C6 | 1.558 (3) | O2—H2A | 0.8200 |
C5—H5A | 0.9800 | O5—H5B | 0.8200 |
C6—C10 | 1.507 (3) | ||
N3—C1—S1 | 115.3 (2) | C5—C6—H6A | 110.7 |
N3—C1—H1B | 122.4 | C3—C7—C8 | 101.18 (17) |
S1—C1—H1B | 122.4 | C3—C7—H7A | 111.5 |
N2—C2—N1 | 122.5 (2) | C8—C7—H7A | 111.5 |
N2—C2—S1 | 113.71 (18) | C3—C7—H7B | 111.5 |
N1—C2—S1 | 123.80 (18) | C8—C7—H7B | 111.5 |
O1—C3—C7 | 103.14 (18) | H7A—C7—H7B | 109.4 |
O1—C3—C6 | 102.49 (17) | C7—C8—C4 | 101.53 (18) |
C7—C3—C6 | 109.34 (19) | C7—C8—H8A | 111.5 |
O1—C3—H3A | 113.6 | C4—C8—H8A | 111.5 |
C7—C3—H3A | 113.6 | C7—C8—H8B | 111.5 |
C6—C3—H3A | 113.6 | C4—C8—H8B | 111.5 |
O1—C4—C5 | 102.67 (17) | H8A—C8—H8B | 109.3 |
O1—C4—C8 | 102.77 (18) | O3—C9—O2 | 122.9 (2) |
C5—C4—C8 | 108.84 (18) | O3—C9—C5 | 121.68 (19) |
O1—C4—H4A | 113.8 | O2—C9—C5 | 115.39 (19) |
C5—C4—H4A | 113.8 | O4—C10—O5 | 123.7 (2) |
C8—C4—H4A | 113.8 | O4—C10—C6 | 123.5 (2) |
C9—C5—C4 | 116.94 (17) | O5—C10—C6 | 112.67 (18) |
C9—C5—C6 | 114.05 (17) | C1—S1—C2 | 86.76 (12) |
C4—C5—C6 | 101.48 (17) | C2—N1—H1A | 120.0 |
C9—C5—H5A | 108.0 | C2—N1—H1C | 120.0 |
C4—C5—H5A | 108.0 | H1A—N1—H1C | 120.0 |
C6—C5—H5A | 108.0 | C2—N2—N3 | 111.89 (19) |
C10—C6—C3 | 108.99 (18) | C1—N3—N2 | 112.4 (2) |
C10—C6—C5 | 115.12 (17) | C3—O1—C4 | 96.42 (15) |
C3—C6—C5 | 100.22 (17) | H1WA—O1W—H1WB | 101 (2) |
C10—C6—H6A | 110.7 | C9—O2—H2A | 109.5 |
C3—C6—H6A | 110.7 | C10—O5—H5B | 109.5 |
O1—C4—C5—C9 | 90.1 (2) | C6—C5—C9—O3 | −62.0 (3) |
C8—C4—C5—C9 | −161.49 (19) | C4—C5—C9—O2 | 2.8 (3) |
O1—C4—C5—C6 | −34.65 (19) | C6—C5—C9—O2 | 120.9 (2) |
C8—C4—C5—C6 | 73.8 (2) | C3—C6—C10—O4 | 65.8 (3) |
O1—C3—C6—C10 | −86.2 (2) | C5—C6—C10—O4 | −45.8 (3) |
C7—C3—C6—C10 | 164.91 (18) | C3—C6—C10—O5 | −110.5 (2) |
O1—C3—C6—C5 | 35.06 (19) | C5—C6—C10—O5 | 137.9 (2) |
C7—C3—C6—C5 | −73.9 (2) | N3—C1—S1—C2 | 0.4 (2) |
C9—C5—C6—C10 | −10.1 (3) | N2—C2—S1—C1 | −0.1 (2) |
C4—C5—C6—C10 | 116.51 (19) | N1—C2—S1—C1 | 179.7 (2) |
C9—C5—C6—C3 | −126.86 (18) | N1—C2—N2—N3 | −179.9 (2) |
C4—C5—C6—C3 | −0.22 (19) | S1—C2—N2—N3 | −0.1 (3) |
O1—C3—C7—C8 | −34.6 (2) | S1—C1—N3—N2 | −0.5 (3) |
C6—C3—C7—C8 | 73.9 (2) | C2—N2—N3—C1 | 0.4 (3) |
C3—C7—C8—C4 | 0.3 (2) | C7—C3—O1—C4 | 56.17 (19) |
O1—C4—C8—C7 | 33.9 (2) | C6—C3—O1—C4 | −57.40 (18) |
C5—C4—C8—C7 | −74.5 (2) | C5—C4—O1—C3 | 57.35 (18) |
C4—C5—C9—O3 | 179.9 (2) | C8—C4—O1—C3 | −55.63 (18) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O4i | 0.86 | 2.11 | 2.930 (3) | 160 |
N1—H1C···N3ii | 0.86 | 2.15 | 2.994 (3) | 166 |
N1—H1C···N2ii | 0.86 | 2.69 | 3.519 (3) | 161 |
O2—H2A···O1Wiii | 0.82 | 1.81 | 2.626 (2) | 176 |
O5—H5B···N2iv | 0.82 | 1.85 | 2.664 (2) | 172 |
O1W—H1WA···O3v | 0.86 (2) | 1.91 (2) | 2.766 (2) | 175 (3) |
O1W—H1WB···O4vi | 0.82 (2) | 2.51 (3) | 3.151 (3) | 137 (3) |
O1W—H1WB···O1vi | 0.82 (2) | 2.55 (3) | 3.061 (3) | 122 (3) |
Symmetry codes: (i) x+1/2, −y−1/2, z+1/2; (ii) x+1, y, z; (iii) −x+1/2, y−1/2, −z+1/2; (iv) x−1/2, −y−1/2, z−1/2; (v) −x−1/2, y+1/2, −z+1/2; (vi) −x, −y, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: AT2800).
References
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021825/at2800sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021825/at2800Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report