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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jun 17;65(Pt 7):o1597. doi: 10.1107/S1600536809022090

N′-(Di-2-pyridylmethyl­ene)benzo­hydrazide

Ismail Warad a,*, Mohammed Al-Nuri b, Saud Al-Resayes a, Khalid Al-Farhan a, Mohamed Ghazzali a
PMCID: PMC2969230  PMID: 21582871

Abstract

In the title Schiff base, C18H14N4O, the amido –NH– unit is connected to one of the two pyridyl N atoms at an N(—H)⋯N distance of 2.624 (2) Å. The mol­ecular packing features an inter­molecular C—H⋯N R 2 2(6) hydrogen-bonding ring motif.

Related literature

For medicinal applications of benzohydrazides, see: Raparti et al. (2009); Zhong et al. (2007). For a previous study on the synthesis of benzohyrazide derivatives, see: Abu-El-Halawa et al. (2007). For ring-motif analysis; see: Bernstein et al. (1995); Grell et al. (1999).graphic file with name e-65-o1597-scheme1.jpg

Experimental

Crystal data

  • C18H14N4O

  • M r = 302.33

  • Monoclinic, Inline graphic

  • a = 8.2741 (5) Å

  • b = 22.1436 (14) Å

  • c = 8.8006 (5) Å

  • β = 108.974 (2)°

  • V = 1524.82 (15) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 295 K

  • 0.50 × 0.30 × 0.10 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2007) T min = 0.968, T max = 0.989

  • 33115 measured reflections

  • 3491 independent reflections

  • 2329 reflections with I > 2δ(I)

  • R int = 0.050

Refinement

  • R[F 2 > 2σ(F 2)] = 0.053

  • wR(F 2) = 0.169

  • S = 0.99

  • 3491 reflections

  • 208 parameters

  • H-atom parameters constrained

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2007); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006) and PLUTO (Motherwell et al., 1999); software used to prepare material for publication: publCIF (Westrip, 2009).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022090/ng2595sup1.cif

e-65-o1597-sup1.cif (16.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022090/ng2595Isup2.hkl

e-65-o1597-Isup2.hkl (171.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H7⋯N3 0.86 1.94 2.624 (2) 136
C9—H9⋯N4 0.93 2.45 2.973 (2) 115

Acknowledgments

IW and SAR thank SABIC for financial support.

supplementary crystallographic information

Comment

Benzohydrazide derivatives were known as good antitumor and antimycobacterial agent (Raparti et al. 2009; Zhong et al. 2007). The molecular packing of the title compound is supported by C— H···N intermolecular hydrogen bondings at D···A distance of 2.956 (1) and D— H···A angle of 128.92 (1)° that is recognized by R22(6) second order ring motif, as earlier defined (Bernstein et al. 1995; Grell et al. 1999) and calculated with Pluto (Motherwell et al., 1999), see Figure 2.

Experimental

Equimolar amounts of di-2-pyridyl ketone and benzohydrazide were mixed in ethanol.(Abu-El-Halawa et al. 2007) Five drops of conc. HCl were added and the mixture was refluxed for 8–10 h. After cooling, distilled water was added up to 1:3 volume ratio followed by addition of several drops of sodium hydroxide solution. The product was re-crystallized twice by water. IR, cm-1 (CHCl3): 3280, 3210, 3100, 3020, 1660, 1620, 1600, 1580, 1480, 1450, 1350, 1160, 1040, 770, 660. 1H NMR (p.p.m.): 10.70 (bs, 1H exchangeable with D2O), 8.83 (cp, 2H of two pyridine rings), 8.02 (cp, 2H of two pyridine rings), 7.99 (cp, 2H of two pyridine rings), 7.95 (cp, 2H of benzene ring), 7.62 (cp, 2H of two pyridine rings), 7.44 (cp, 2H of benzene ring) p.p.m.; 13C NMR (p.p.m.): 163.0, 155.6, 152.6, 149.2, 136.1, 134.2, 132.2, 128.9, 127.5, 126.2, 123.9.

Refinement

Hydrogen atoms were refined isotropically and were constrained to the ideal geometry using an appropriate riding model with Uiso(H) fixed at 1.2 times Ueq of the pivot atom.

Figures

Fig. 1.

Fig. 1.

Perspective drawings of the title compound showing the atom-numbering scheme. The atomic displacement ellipsoids are shown at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

C— H···N intermolecular hydrogen bonding pattern of the title compound with hydrogen bonding shown as broken lines. For symmetry codes; i: 1 + x, y, z and ii: 1 - x, 1 - y, 2 - z.

Crystal data

C18H14N4O F(000) = 632
Mr = 302.33 Dx = 1.317 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybc Cell parameters from 880 reflections
a = 8.2741 (5) Å θ = 3.0–27.4°
b = 22.1436 (14) Å µ = 0.09 mm1
c = 8.8006 (5) Å T = 295 K
β = 108.974 (2)° Block, colourless
V = 1524.82 (15) Å3 0.50 × 0.30 × 0.10 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID diffractometer 3491 independent reflections
Radiation source: fine-focus sealed tube 2329 reflections with I > 2δ(I)
graphite Rint = 0.050
ω scans θmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2007) h = −10→10
Tmin = 0.968, Tmax = 0.989 k = −28→28
33115 measured reflections l = −11→11

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169 H-atom parameters constrained
S = 0.99 w = 1/[σ2(Fo2) + (0.1092P)2 + 0.076P] where P = (Fo2 + 2Fc2)/3
3491 reflections (Δ/σ)max < 0.001
208 parameters Δρmax = 0.15 e Å3
0 restraints Δρmin = −0.24 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.17708 (18) 0.55123 (6) 0.48480 (14) 0.0649 (4)
N1 0.21198 (18) 0.51374 (6) 0.73562 (16) 0.0485 (4)
H7 0.1902 0.5186 0.8240 0.058*
C1 0.1073 (2) 0.62760 (7) 0.8228 (2) 0.0513 (4)
H1 0.1787 0.6045 0.9058 0.062*
N2 0.29967 (18) 0.46379 (6) 0.71474 (16) 0.0472 (3)
C2 0.0312 (2) 0.67909 (8) 0.8581 (2) 0.0598 (5)
H2 0.0526 0.6907 0.9644 0.072*
N3 0.22378 (18) 0.47159 (6) 1.01763 (16) 0.0509 (4)
C3 −0.0768 (2) 0.71315 (8) 0.7347 (2) 0.0604 (5)
H3 −0.1280 0.7477 0.7583 0.072*
N4 0.4144 (2) 0.31839 (6) 0.84066 (19) 0.0550 (4)
C4 −0.1087 (2) 0.69618 (8) 0.5779 (2) 0.0590 (5)
H4 −0.1829 0.7189 0.4956 0.071*
C5 −0.0308 (2) 0.64538 (8) 0.5414 (2) 0.0524 (4)
H5 −0.0509 0.6346 0.4346 0.063*
C6 0.0777 (2) 0.61027 (7) 0.66396 (19) 0.0455 (4)
C7 0.1590 (2) 0.55591 (7) 0.61664 (19) 0.0485 (4)
C8 0.3333 (2) 0.42967 (7) 0.99547 (18) 0.0432 (4)
C9 0.4310 (2) 0.39466 (8) 1.1233 (2) 0.0527 (4)
H9 0.5048 0.3655 1.1072 0.063*
C10 0.4182 (3) 0.40325 (8) 1.2745 (2) 0.0572 (5)
H10 0.4845 0.3804 1.3609 0.069*
C11 0.3068 (2) 0.44583 (8) 1.2965 (2) 0.0533 (4)
H11 0.2958 0.4523 1.3971 0.064*
C12 0.2125 (2) 0.47854 (8) 1.1649 (2) 0.0551 (4)
H12 0.1363 0.5072 1.1789 0.066*
C13 0.3515 (2) 0.42534 (7) 0.83260 (18) 0.0433 (4)
C14 0.4492 (2) 0.37362 (7) 0.79543 (18) 0.0444 (4)
C15 0.5690 (2) 0.38299 (8) 0.71803 (19) 0.0514 (4)
H15 0.5880 0.4216 0.6856 0.062*
C16 0.6594 (2) 0.33445 (9) 0.6899 (2) 0.0611 (5)
H16 0.7415 0.3399 0.6399 0.073*
C17 0.6260 (3) 0.27757 (9) 0.7371 (2) 0.0645 (5)
H17 0.6853 0.2440 0.7199 0.077*
C18 0.5033 (3) 0.27192 (8) 0.8099 (2) 0.0617 (5)
H18 0.4802 0.2334 0.8399 0.074*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0939 (10) 0.0613 (8) 0.0480 (7) 0.0160 (7) 0.0345 (7) 0.0053 (6)
N1 0.0645 (9) 0.0402 (7) 0.0455 (8) 0.0074 (6) 0.0244 (7) 0.0017 (5)
C1 0.0561 (10) 0.0503 (9) 0.0458 (9) 0.0045 (7) 0.0141 (8) 0.0005 (7)
N2 0.0561 (8) 0.0404 (7) 0.0474 (8) 0.0030 (6) 0.0197 (6) −0.0015 (6)
C2 0.0679 (12) 0.0604 (11) 0.0519 (10) 0.0054 (9) 0.0209 (9) −0.0086 (8)
N3 0.0565 (9) 0.0531 (8) 0.0476 (8) 0.0065 (6) 0.0230 (6) 0.0016 (6)
C3 0.0657 (12) 0.0517 (10) 0.0663 (12) 0.0110 (8) 0.0251 (10) −0.0015 (8)
N4 0.0674 (10) 0.0388 (7) 0.0649 (9) −0.0004 (6) 0.0300 (8) −0.0024 (6)
C4 0.0631 (11) 0.0563 (10) 0.0579 (11) 0.0115 (8) 0.0204 (9) 0.0128 (8)
C5 0.0606 (10) 0.0517 (9) 0.0463 (9) 0.0027 (8) 0.0192 (8) 0.0053 (7)
C6 0.0506 (9) 0.0430 (8) 0.0454 (9) −0.0013 (7) 0.0192 (7) 0.0018 (6)
C7 0.0570 (10) 0.0464 (9) 0.0444 (9) 0.0018 (7) 0.0197 (7) 0.0023 (7)
C8 0.0476 (9) 0.0383 (8) 0.0456 (9) −0.0028 (6) 0.0176 (7) −0.0025 (6)
C9 0.0607 (10) 0.0493 (9) 0.0488 (9) 0.0084 (8) 0.0188 (8) 0.0000 (7)
C10 0.0720 (12) 0.0539 (10) 0.0439 (9) 0.0034 (8) 0.0165 (8) 0.0025 (7)
C11 0.0668 (11) 0.0527 (10) 0.0452 (9) −0.0066 (8) 0.0249 (8) −0.0041 (7)
C12 0.0623 (11) 0.0565 (10) 0.0538 (10) 0.0040 (8) 0.0289 (9) −0.0021 (8)
C13 0.0477 (9) 0.0407 (8) 0.0427 (8) −0.0021 (6) 0.0165 (7) −0.0027 (6)
C14 0.0495 (9) 0.0417 (8) 0.0409 (8) −0.0002 (6) 0.0132 (7) −0.0025 (6)
C15 0.0564 (10) 0.0511 (9) 0.0487 (9) −0.0005 (7) 0.0197 (8) 0.0007 (7)
C16 0.0597 (11) 0.0703 (12) 0.0584 (11) 0.0085 (9) 0.0264 (9) −0.0030 (9)
C17 0.0699 (12) 0.0594 (11) 0.0622 (12) 0.0174 (9) 0.0189 (10) −0.0082 (9)
C18 0.0770 (13) 0.0423 (9) 0.0672 (12) 0.0041 (8) 0.0255 (10) −0.0031 (8)

Geometric parameters (Å, °)

O1—C7 1.2217 (18) C6—C7 1.502 (2)
N1—C7 1.365 (2) C8—C9 1.389 (2)
N1—N2 1.3677 (17) C8—C13 1.492 (2)
N1—H7 0.8600 C9—C10 1.382 (2)
C1—C2 1.386 (2) C9—H9 0.9300
C1—C6 1.392 (2) C10—C11 1.375 (2)
C1—H1 0.9300 C10—H10 0.9300
N2—C13 1.302 (2) C11—C12 1.374 (2)
C2—C3 1.384 (3) C11—H11 0.9300
C2—H2 0.9300 C12—H12 0.9300
N3—C12 1.338 (2) C13—C14 1.498 (2)
N3—C8 1.355 (2) C14—C15 1.389 (2)
C3—C4 1.371 (3) C15—C16 1.377 (2)
C3—H3 0.9300 C15—H15 0.9300
N4—C18 1.343 (2) C16—C17 1.382 (3)
N4—C14 1.3458 (19) C16—H16 0.9300
C4—C5 1.385 (2) C17—C18 1.371 (3)
C4—H4 0.9300 C17—H17 0.9300
C5—C6 1.394 (2) C18—H18 0.9300
C5—H5 0.9300
C7—N1—N2 120.17 (13) C10—C9—C8 119.78 (15)
C7—N1—H7 119.9 C10—C9—H9 120.1
N2—N1—H7 119.9 C8—C9—H9 120.1
C2—C1—C6 120.52 (16) C11—C10—C9 119.62 (16)
C2—C1—H1 119.7 C11—C10—H10 120.2
C6—C1—H1 119.7 C9—C10—H10 120.2
C13—N2—N1 118.27 (12) C12—C11—C10 117.75 (15)
C3—C2—C1 119.78 (16) C12—C11—H11 121.1
C3—C2—H2 120.1 C10—C11—H11 121.1
C1—C2—H2 120.1 N3—C12—C11 123.82 (16)
C12—N3—C8 118.61 (14) N3—C12—H12 118.1
C4—C3—C2 120.29 (16) C11—C12—H12 118.1
C4—C3—H3 119.9 N2—C13—C8 127.81 (14)
C2—C3—H3 119.9 N2—C13—C14 112.79 (13)
C18—N4—C14 116.92 (15) C8—C13—C14 119.29 (13)
C3—C4—C5 120.30 (16) N4—C14—C15 122.42 (15)
C3—C4—H4 119.8 N4—C14—C13 116.60 (14)
C5—C4—H4 119.8 C15—C14—C13 120.98 (14)
C4—C5—C6 120.28 (16) C16—C15—C14 119.18 (16)
C4—C5—H5 119.9 C16—C15—H15 120.4
C6—C5—H5 119.9 C14—C15—H15 120.4
C1—C6—C5 118.80 (15) C15—C16—C17 118.97 (17)
C1—C6—C7 123.43 (14) C15—C16—H16 120.5
C5—C6—C7 117.76 (14) C17—C16—H16 120.5
O1—C7—N1 124.24 (15) C18—C17—C16 118.30 (17)
O1—C7—C6 122.38 (14) C18—C17—H17 120.8
N1—C7—C6 113.37 (13) C16—C17—H17 120.9
N3—C8—C9 120.41 (14) N4—C18—C17 124.18 (17)
N3—C8—C13 117.62 (13) N4—C18—H18 117.9
C9—C8—C13 121.88 (14) C17—C18—H18 117.9

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H7···N3 0.86 1.94 2.624 (2) 136
C9—H9···N4 0.93 2.45 2.973 (2) 115

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2595).

References

  1. Abu-El-Halawa, R., Al-Nuri, M. & Mahmoud, F. (2007). Asian J. Chem.19, 1658–1666.
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  3. K. Brandenburg (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany.
  4. Grell, J., Bernstein, J. & Tinhofer, G. (1999). Acta Cryst. B55, 1030–1043. [DOI] [PubMed]
  5. Motherwell, W. D. S., Shields, G. P. & Allen, F. H. (1999). Acta Cryst. B55, 1044–1056. [DOI] [PubMed]
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  9. Westrip, S. P. (2009). publCIF In preparation.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022090/ng2595sup1.cif

e-65-o1597-sup1.cif (16.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022090/ng2595Isup2.hkl

e-65-o1597-Isup2.hkl (171.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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