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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jun 20;65(Pt 7):o1643. doi: 10.1107/S1600536809022314

4-Fluoro-N-[3-(2-fluoro­phen­yl)-4-methyl-2,3-dihydro-2-thienyl­idene]benzamide

Aamer Saeed a,*, Uzma Shaheen a, Muhammad Latif b, Michael Bolte c
PMCID: PMC2969331  PMID: 21582907

Abstract

In the title compound, C17H12F2N2OS, the planar thia­zole ring (r.m.s. deviation = 0.012 Å) makes dihedral angles of 15.08 (9) and 81.81 (6)° with the 4-fluoro­phenyl and 2-fluoro­phenyl rings, respectively. The 2-fluoro­phenyl ring is disordered over two orientations with site-occupancy factors of 0.810 (3) and 0.190 (3). The structure contains inter­molecular C—H⋯O hydrogen bonds.

Related literature

For the biological activity of imino-1,3-thia­zoline derivatives, see: Kim et al. (2007); Vicini et al. (2006); Hosseinimehr et al. (2001); Zhang et al. (2000); Pietrancosta et al. (2006). For details of the synthesis, see: Saeed et al. (2008a ). For a related structure, see: Saeed et al. (2008b ).graphic file with name e-65-o1643-scheme1.jpg

Experimental

Crystal data

  • C17H12F2N2OS

  • M r = 330.35

  • Orthorhombic, Inline graphic

  • a = 7.0982 (14) Å

  • b = 11.423 (2) Å

  • c = 18.949 (4) Å

  • V = 1536.5 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 173 K

  • 0.36 × 0.34 × 0.28 mm

Data collection

  • Stoe IPDS-II two-circle diffractometer

  • Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) T min = 0.920, T max = 0.937

  • 10484 measured reflections

  • 3531 independent reflections

  • 3213 reflections with I > 2σ(I)

  • R int = 0.046

Refinement

  • R[F 2 > 2σ(F 2)] = 0.034

  • wR(F 2) = 0.082

  • S = 0.99

  • 3531 reflections

  • 219 parameters

  • H-atom parameters constrained

  • Δρmax = 0.15 e Å−3

  • Δρmin = −0.26 e Å−3

  • Absolute structure: Flack (1983), 1491 Friedel pairs

  • Flack parameter: −0.15 (6)

Data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022314/bi2375sup1.cif

e-65-o1643-sup1.cif (19.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022314/bi2375Isup2.hkl

e-65-o1643-Isup2.hkl (173.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5⋯O1i 0.95 2.41 3.322 (2) 160

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

The imino-1,3-thiazoline group is found in a variety of biologically active natural products and finds extensive applications in medicinal chemistry. 2-Thiazolylimino-5-arylidene-4-thiazolidinones show noticeable antimicrobial activity against bacteria, yeasts and mould (Kim et al., 2007). 3-Substituted 2-(cyanoimino)thiazolidines can be used in agriculture due to their neonicotinoid insecticidal activity (Vicini et al., 2006). 3-Substituted thiazolidines show radioprotective properties against γ-radiation (Hosseinimehr et al., 2001). KHG22394, a 2-imino-1,3-thiazoline derivative, significantly inhibits melanin production in a dose-dependent manner, thus acting as a skin whitening agent (Zhang et al., 2000) and pifithrin-alpha, another iminothiazoline, is a reversible inhibitor of p53-mediated apoptosis and p53-dependent gene transcription (Pietrancosta et al., 2006).

Experimental

The title compound was prepared according to the procedure reported earlier (Saeed et al. (2008a). Crystallization of the residue in CHCl3 afforded the title compound (81%) as white needles: Anal. calcd. for C14H12ClNO1: C 68.44, H 4.92, N 5.70%; found: C 68.39, H 4.90, N 5.67%

Refinement

H atoms were geometrically positioned and refined using a riding model with fixed individual displacement parameters [Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(Cmethyl)] using a riding model with C—H(aromatic) = 0.95 Å or C—H(methyl) = 0.98 Å. The ortho-fluoro-phenyl ring is disordered over two positions with site occupation factors of 0.810 (3) and 0.190 (3).

Figures

Fig. 1.

Fig. 1.

Perspective view of the title compound with the atom numbering scheme; displacement ellipsoids are at the 50% probability level; H atoms are drawn as small spheres of arbitrary radii. The atoms of the minor occupied sites have been omitted for clarity.

Crystal data

C17H12F2N2OS F(000) = 680
Mr = 330.35 Dx = 1.428 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 9675 reflections
a = 7.0982 (14) Å θ = 3.4–27.8°
b = 11.423 (2) Å µ = 0.24 mm1
c = 18.949 (4) Å T = 173 K
V = 1536.5 (5) Å3 Block, colourless
Z = 4 0.36 × 0.34 × 0.28 mm

Data collection

Stoe IPDS-II two-circle diffractometer 3531 independent reflections
Radiation source: fine-focus sealed tube 3213 reflections with I > 2σ(I)
graphite Rint = 0.046
ω scans θmax = 27.6°, θmin = 3.4°
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) h = −8→9
Tmin = 0.920, Tmax = 0.937 k = −12→14
10484 measured reflections l = −24→23

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034 H-atom parameters constrained
wR(F2) = 0.082 w = 1/[σ2(Fo2) + (0.052P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99 (Δ/σ)max = 0.001
3531 reflections Δρmax = 0.15 e Å3
219 parameters Δρmin = −0.26 e Å3
0 restraints Absolute structure: Flack (1983), 1491 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: −0.15 (6)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 0.86255 (5) 0.65177 (5) 0.73205 (2) 0.04103 (12)
N1 0.56925 (19) 0.59033 (13) 0.64274 (7) 0.0316 (3)
O1 0.7594 (2) 0.44060 (14) 0.68401 (8) 0.0520 (4)
F1 0.0840 (3) 0.15356 (14) 0.55262 (9) 0.0825 (5)
F2 0.71228 (15) 0.86728 (14) 0.53579 (6) 0.0406 (4) 0.810 (3)
F2' 0.2818 (7) 0.7551 (6) 0.7021 (3) 0.048 (2) 0.190 (3)
C1 0.6168 (2) 0.47540 (16) 0.65201 (8) 0.0356 (4)
C2 0.67222 (19) 0.66920 (16) 0.67514 (8) 0.0303 (3)
N3 0.63342 (18) 0.78545 (13) 0.66789 (7) 0.0304 (3)
C4 0.7456 (2) 0.86166 (18) 0.70871 (8) 0.0340 (4)
C5 0.8742 (2) 0.80204 (19) 0.74587 (9) 0.0414 (4)
H5 0.9626 0.8381 0.7766 0.050*
C6 0.7117 (3) 0.98996 (19) 0.70565 (10) 0.0436 (4)
H6A 0.7834 1.0287 0.7432 0.065*
H6B 0.5771 1.0056 0.7121 0.065*
H6C 0.7523 1.0201 0.6597 0.065*
C11 0.4788 (3) 0.39042 (17) 0.62212 (8) 0.0353 (4)
C12 0.5145 (3) 0.27036 (19) 0.62624 (10) 0.0451 (4)
H12 0.6301 0.2435 0.6457 0.054*
C13 0.3827 (3) 0.19005 (18) 0.60216 (10) 0.0513 (5)
H13 0.4062 0.1083 0.6052 0.062*
C14 0.2173 (3) 0.2315 (2) 0.57387 (11) 0.0529 (5)
C15 0.1774 (3) 0.3489 (2) 0.56784 (11) 0.0519 (5)
H15 0.0622 0.3747 0.5476 0.062*
C16 0.3098 (3) 0.42878 (17) 0.59203 (10) 0.0405 (4)
H16 0.2854 0.5103 0.5881 0.049*
C21 0.48714 (19) 0.82453 (15) 0.62105 (8) 0.0278 (3)
C22 0.5303 (2) 0.86227 (15) 0.55392 (8) 0.0290 (3)
H22 0.6587 0.8661 0.5400 0.035* 0.190 (3)
C23 0.3925 (2) 0.89464 (15) 0.50637 (8) 0.0325 (3)
H23 0.4250 0.9201 0.4602 0.039*
C24 0.2054 (2) 0.88918 (16) 0.52746 (9) 0.0348 (4)
H24 0.1085 0.9107 0.4954 0.042*
C25 0.1592 (2) 0.8527 (2) 0.59472 (9) 0.0439 (4)
H25 0.0309 0.8499 0.6089 0.053*
C26 0.2997 (2) 0.8203 (2) 0.64164 (9) 0.0403 (4)
H26 0.2675 0.7945 0.6877 0.048* 0.810 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.02961 (17) 0.0565 (3) 0.0369 (2) 0.00724 (19) −0.00870 (15) 0.0061 (2)
N1 0.0334 (6) 0.0324 (8) 0.0290 (6) 0.0029 (5) −0.0029 (5) 0.0041 (6)
O1 0.0474 (7) 0.0475 (9) 0.0610 (8) 0.0136 (6) −0.0158 (6) 0.0073 (7)
F1 0.1076 (11) 0.0365 (7) 0.1034 (11) −0.0068 (8) −0.0504 (9) −0.0073 (8)
F2 0.0270 (6) 0.0573 (10) 0.0374 (6) −0.0039 (5) 0.0046 (4) 0.0079 (6)
F2' 0.032 (3) 0.074 (5) 0.038 (3) 0.005 (3) 0.006 (2) 0.014 (3)
C1 0.0391 (8) 0.0375 (9) 0.0302 (7) 0.0106 (8) −0.0003 (6) 0.0046 (7)
C2 0.0263 (6) 0.0403 (10) 0.0242 (6) 0.0023 (6) −0.0005 (5) 0.0036 (6)
N3 0.0260 (5) 0.0362 (7) 0.0290 (6) −0.0027 (6) −0.0054 (5) 0.0023 (5)
C4 0.0269 (6) 0.0454 (11) 0.0299 (7) −0.0076 (7) −0.0004 (5) −0.0033 (7)
C5 0.0288 (7) 0.0603 (12) 0.0351 (8) −0.0059 (7) −0.0074 (6) −0.0013 (7)
C6 0.0402 (8) 0.0462 (12) 0.0443 (9) −0.0112 (8) −0.0037 (7) −0.0079 (8)
C11 0.0460 (9) 0.0325 (9) 0.0275 (7) 0.0087 (7) −0.0001 (6) 0.0021 (6)
C12 0.0590 (11) 0.0372 (10) 0.0391 (9) 0.0129 (9) −0.0036 (8) −0.0004 (8)
C13 0.0751 (13) 0.0302 (10) 0.0485 (10) 0.0111 (9) −0.0098 (10) −0.0064 (8)
C14 0.0751 (13) 0.0332 (11) 0.0504 (11) −0.0010 (10) −0.0168 (10) −0.0057 (9)
C15 0.0656 (11) 0.0348 (10) 0.0553 (11) 0.0055 (9) −0.0237 (9) −0.0007 (10)
C16 0.0525 (10) 0.0295 (9) 0.0395 (8) 0.0064 (7) −0.0111 (7) 0.0015 (8)
C21 0.0262 (6) 0.0285 (8) 0.0288 (7) −0.0004 (6) −0.0037 (5) 0.0016 (6)
C22 0.0280 (6) 0.0278 (8) 0.0314 (7) −0.0019 (6) 0.0010 (5) 0.0002 (6)
C23 0.0409 (8) 0.0299 (8) 0.0267 (7) −0.0024 (7) −0.0022 (6) 0.0021 (6)
C24 0.0335 (7) 0.0363 (9) 0.0346 (8) 0.0029 (7) −0.0097 (6) −0.0014 (7)
C25 0.0258 (6) 0.0679 (13) 0.0379 (8) 0.0020 (8) −0.0020 (6) 0.0010 (9)
C26 0.0290 (7) 0.0615 (13) 0.0305 (7) −0.0027 (8) −0.0009 (6) 0.0070 (8)

Geometric parameters (Å, °)

S1—C5 1.738 (2) C12—C13 1.388 (3)
S1—C2 1.7400 (15) C12—H12 0.950
N1—C2 1.313 (2) C13—C14 1.375 (3)
N1—C1 1.367 (2) C13—H13 0.950
O1—C1 1.245 (2) C14—C15 1.376 (3)
F1—C14 1.360 (3) C15—C16 1.387 (3)
F2—C22 1.3379 (18) C15—H15 0.950
F2'—C26 1.373 (6) C16—H16 0.950
C1—C11 1.491 (3) C21—C22 1.378 (2)
C2—N3 1.363 (2) C21—C26 1.387 (2)
N3—C4 1.411 (2) C22—C23 1.380 (2)
N3—C21 1.4370 (18) C22—H22 0.950
C4—C5 1.339 (2) C23—C24 1.388 (2)
C4—C6 1.486 (3) C23—H23 0.950
C5—H5 0.950 C24—C25 1.380 (2)
C6—H6A 0.980 C24—H24 0.950
C6—H6B 0.980 C25—C26 1.386 (2)
C6—H6C 0.980 C25—H25 0.950
C11—C12 1.397 (3) C26—H26 0.950
C11—C16 1.399 (2)
C5—S1—C2 90.99 (8) F1—C14—C13 119.0 (2)
C2—N1—C1 117.49 (14) F1—C14—C15 118.1 (2)
O1—C1—N1 124.75 (18) C13—C14—C15 122.9 (2)
O1—C1—C11 120.75 (17) C14—C15—C16 118.31 (19)
N1—C1—C11 114.48 (14) C14—C15—H15 120.8
N1—C2—N3 120.60 (13) C16—C15—H15 120.8
N1—C2—S1 130.07 (14) C15—C16—C11 120.64 (18)
N3—C2—S1 109.32 (12) C15—C16—H16 119.7
C2—N3—C4 115.58 (14) C11—C16—H16 119.7
C2—N3—C21 120.72 (13) C22—C21—C26 118.93 (14)
C4—N3—C21 123.70 (15) C22—C21—N3 120.45 (13)
C5—C4—N3 111.06 (17) C26—C21—N3 120.56 (14)
C5—C4—C6 129.23 (16) F2—C22—C21 117.72 (14)
N3—C4—C6 119.71 (15) F2—C22—C23 120.34 (14)
C4—C5—S1 113.00 (13) C21—C22—C23 121.94 (14)
C4—C5—H5 123.5 C21—C22—H22 118.9
S1—C5—H5 123.5 C23—C22—H22 119.1
C4—C6—H6A 109.5 C22—C23—C24 118.55 (15)
C4—C6—H6B 109.5 C22—C23—H23 120.7
H6A—C6—H6B 109.5 C24—C23—H23 120.7
C4—C6—H6C 109.5 C25—C24—C23 120.43 (14)
H6A—C6—H6C 109.5 C25—C24—H24 119.8
H6B—C6—H6C 109.5 C23—C24—H24 119.8
C12—C11—C16 119.08 (18) C24—C25—C26 120.12 (14)
C12—C11—C1 119.91 (16) C24—C25—H25 119.9
C16—C11—C1 120.96 (16) C26—C25—H25 119.9
C13—C12—C11 120.54 (18) F2'—C26—C25 127.8 (3)
C13—C12—H12 119.7 F2'—C26—C21 110.0 (3)
C11—C12—H12 119.7 C25—C26—C21 120.02 (15)
C14—C13—C12 118.5 (2) C25—C26—H26 119.9
C14—C13—H13 120.8 C21—C26—H26 120.0
C12—C13—H13 120.8
C2—N1—C1—O1 −6.3 (3) C12—C13—C14—C15 0.6 (3)
C2—N1—C1—C11 171.87 (14) F1—C14—C15—C16 177.5 (2)
C1—N1—C2—N3 179.61 (14) C13—C14—C15—C16 −0.6 (4)
C1—N1—C2—S1 −2.0 (2) C14—C15—C16—C11 −0.4 (3)
C5—S1—C2—N1 −176.30 (15) C12—C11—C16—C15 1.3 (3)
C5—S1—C2—N3 2.19 (11) C1—C11—C16—C15 −176.43 (18)
N1—C2—N3—C4 176.05 (13) C2—N3—C21—C22 −97.29 (18)
S1—C2—N3—C4 −2.61 (15) C4—N3—C21—C22 82.51 (19)
N1—C2—N3—C21 −4.1 (2) C2—N3—C21—C26 80.0 (2)
S1—C2—N3—C21 177.21 (10) C4—N3—C21—C26 −100.2 (2)
C2—N3—C4—C5 1.65 (19) C26—C21—C22—F2 178.95 (18)
C21—N3—C4—C5 −178.16 (13) N3—C21—C22—F2 −3.7 (2)
C2—N3—C4—C6 −178.75 (14) C26—C21—C22—C23 −0.8 (3)
C21—N3—C4—C6 1.4 (2) N3—C21—C22—C23 176.59 (16)
N3—C4—C5—S1 0.14 (17) F2—C22—C23—C24 −179.43 (18)
C6—C4—C5—S1 −179.40 (14) C21—C22—C23—C24 0.3 (3)
C2—S1—C5—C4 −1.36 (13) C22—C23—C24—C25 0.4 (3)
O1—C1—C11—C12 −3.8 (3) C23—C24—C25—C26 −0.5 (3)
N1—C1—C11—C12 177.96 (16) C24—C25—C26—F2' −161.8 (4)
O1—C1—C11—C16 173.91 (17) C24—C25—C26—C21 0.0 (3)
N1—C1—C11—C16 −4.3 (2) C22—C21—C26—F2' 165.4 (3)
C16—C11—C12—C13 −1.3 (3) N3—C21—C26—F2' −12.0 (4)
C1—C11—C12—C13 176.43 (16) C22—C21—C26—C25 0.6 (3)
C11—C12—C13—C14 0.4 (3) N3—C21—C26—C25 −176.76 (18)
C12—C13—C14—F1 −177.5 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C5—H5···O1i 0.95 2.41 3.322 (2) 160

Symmetry codes: (i) −x+2, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BI2375).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022314/bi2375sup1.cif

e-65-o1643-sup1.cif (19.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022314/bi2375Isup2.hkl

e-65-o1643-Isup2.hkl (173.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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