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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jun 17;65(Pt 7):o1598. doi: 10.1107/S1600536809022508

2,2′-[1,1′-(Ethyl­enedioxy­dinitrilo)diethyl­idyne]di-1-naphthol

Wen-Kui Dong a,*, Jian-chao Wu a, Jian Yao a, Li Li a, Shang-sheng Gong a
PMCID: PMC2969397  PMID: 21582872

Abstract

The complete molecule of the title compound, C26H24N2O4, is generated by a crystallographic centre of inversion. There are two intra­molecular O—H⋯N hydrogen bonds. In the crystal structure, inter­molecular C—H⋯O hydrogen bonds result in zigzag chains.

Related literature

For the applications of Shiff base ligands, see: Calligaris & Randaccio (1987) For the applications bis­oxime derivatives of salen-type compounds, see: Sun et al. (2004); Wang et al. (2007). For related structures, see: Dong et al. (2008a ,b ,c );graphic file with name e-65-o1598-scheme1.jpg

Experimental

Crystal data

  • C26H24N2O4

  • M r = 428.47

  • Monoclinic, Inline graphic

  • a = 12.6682 (18) Å

  • b = 9.3728 (15) Å

  • c = 18.335 (2) Å

  • β = 97.478 (2)°

  • V = 2158.6 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 298 K

  • 0.39 × 0.37 × 0.13 mm

Data collection

  • Bruker SMART 1000 CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.966, T max = 0.989

  • 5220 measured reflections

  • 1894 independent reflections

  • 1027 reflections with I > 2σ(I)

  • R int = 0.035

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.122

  • S = 1.06

  • 1894 reflections

  • 145 parameters

  • H-atom parameters constrained

  • Δρmax = 0.14 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022508/hg2524sup1.cif

e-65-o1598-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022508/hg2524Isup2.hkl

e-65-o1598-Isup2.hkl (93.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯N1 0.82 1.84 2.562 (3) 146
C10—H10⋯O2i 0.93 2.63 3.446 (3) 146

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge finanical support from the ‘Jing Lan’ Talent Engineering Funds of Lanzhou Jiaotong University.

supplementary crystallographic information

Comment

There has been considerable interest in Schiff base ligand containing oxygen and imine nitrogen atoms due to their variety of applications, especially for catalysis and enzymatic reactions, magnetism, and supramolecular architectures (Calligaris & Randaccio, 1987). salen-type compounds and its bisoxime derivatives are a new class of multidentate ligand, which can be used as elemental building blocks for construction of supramolecular structures via intermolecular hydrogen bonding or short contact interaction (Sun et al., 2004; Wang et al., 2007). As an extension of our work (Dong et al., 2008a; Dong et al., 2008b) on the structural characterization of salen-type bisoxime compounds, here report the synthesis and structure of the title compound (Fig. 1).

The single-crystal structure of the title compound is built up by discrete C26H24N2O4 molecules, in which all bond lengths are in normal ranges. The molecule has a crystallographic twofold rotation axis (symmetry code: -x, y, 1/2 - z) and screw axis (symmetry code: 1/2 - x, 1/2 + y, 1/2 - z), and adopts a distorted E-configuration. This structure is similar to what was observed in our previously reported E-configuration compounds of 2,2'-[1,1'-Ethylenedioxybis(nitriloethylidyne)]diphenol (Wang et al., 2007). The dihedral angle formed by the two naphthalene rings in each molecule of the title compound is about 43.20 °. There are two intramolecular hydrogen bonds, O2—H2···N1 (d(O2—H2) = 0.82 Å, d(H2···N1) = 1.84 Å, d(O2···N1) = 2.562 (3) Å, <O2—H2···N1 = 146°). Besides in the crystal structure, four intermolecular hydrogen bonds, C10—H10···O2 (d(C10—H10) = 0.93 Å, d(H10···O2) = 2.63 Å, d(C10···O2) = 3.446 (3) Å, <C10—H10···O2 = 146°), link two other molecules into infinite zigzag supramolecular structure (Fig. 2).

Experimental

2,2'-[1,1'-Ethylenedioxybis(nitriloethylidyne)]dinaphthol was synthesized according to an analogous method reported earlier (Dong et al., 2008c). To an ethanol solution (5 ml) of 2-acetyl-1-naphthol (392.1 mg, 2.10 mmol) was added dropwise an ethanol solution (3 ml) of 1,2-bis(aminooxy)ethane (96.2 mg, 1.04 mmol). The mixture solution was stirred at 328–433 K for 72 h. After cooling to room temperature, the precipitate was filtered off, and washed successively three times with ethanol. The product was dried in vacuo and purified by recrystallization from ethanol to yield 313.7 mg (Yield, 70.1%) of powder; m.p. 471–472 K. Colorless block-like single crystals suitable for X-ray diffraction studies were obtained by slow evaporation from a solution of dichloromethane of 2,2'-[1,1'-ethylenedioxybis(nitriloethylidyne)]dinaphthol at room temperature for about three weeks. Anal. Calc. for C26H24N2O4: C, 73.28; H, 5.92; N, 6.33; Found: C, 73.25; H, 5.97; N, 6.29.

Refinement

Non-H atoms were refined anisotropically. H atoms were treated as riding atoms with distances C—H = 0.97 (CH2), C—H = 0.96 (CH3), 0.93 Å (CH), 0.82 Å (OH), and Uiso(H) = 1.2 Ueq(C) and 1.5 Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with atom numbering scheme [Symmetry codes: -x+2, y, -z + 3/2]. Displacement ellipsoids for non-hydrogen atoms are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Part of the supramolecular structure of the title compound. Intra- and intermolecular hydrogen bonds are shown as dashed lines.

Crystal data

C26H24N2O4 F(000) = 904
Mr = 428.47 Dx = 1.318 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 1610 reflections
a = 12.6682 (18) Å θ = 2.2–26.7°
b = 9.3728 (15) Å µ = 0.09 mm1
c = 18.335 (2) Å T = 298 K
β = 97.478 (2)° Block-shaped, colorless
V = 2158.6 (5) Å3 0.39 × 0.37 × 0.13 mm
Z = 4

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 1894 independent reflections
Radiation source: fine-focus sealed tube 1027 reflections with I > 2σ(I)
graphite Rint = 0.035
φ and ω scans θmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −15→14
Tmin = 0.966, Tmax = 0.989 k = −11→9
5220 measured reflections l = −18→21

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.037P)2 + 1.5505P] where P = (Fo2 + 2Fc2)/3
1894 reflections (Δ/σ)max < 0.001
145 parameters Δρmax = 0.14 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.97510 (17) 0.0879 (2) 0.61829 (11) 0.0528 (6)
O1 1.04967 (14) 0.11327 (19) 0.68140 (9) 0.0610 (5)
O2 0.84279 (14) −0.06506 (17) 0.53429 (9) 0.0620 (6)
H2 0.8831 −0.0456 0.5717 0.093*
C1 1.0479 (2) −0.0049 (3) 0.73030 (14) 0.0567 (7)
H1A 1.1113 −0.0024 0.7661 0.068*
H1B 1.0493 −0.0929 0.7025 0.068*
C2 0.9707 (2) 0.1902 (3) 0.57048 (14) 0.0500 (7)
C3 1.0376 (2) 0.3226 (3) 0.58230 (16) 0.0714 (9)
H3A 1.0938 0.3072 0.6220 0.107*
H3B 0.9941 0.4009 0.5942 0.107*
H3C 1.0678 0.3444 0.5382 0.107*
C4 0.83740 (19) 0.0469 (3) 0.48738 (13) 0.0464 (6)
C5 0.89572 (19) 0.1710 (2) 0.50274 (12) 0.0469 (6)
C6 0.8818 (2) 0.2819 (3) 0.44918 (15) 0.0610 (8)
H6 0.9202 0.3660 0.4582 0.073*
C7 0.8146 (2) 0.2692 (3) 0.38547 (16) 0.0676 (8)
H7 0.8065 0.3454 0.3527 0.081*
C8 0.7568 (2) 0.1424 (3) 0.36816 (14) 0.0552 (7)
C9 0.7676 (2) 0.0289 (3) 0.42035 (13) 0.0490 (7)
C10 0.7106 (2) −0.0991 (3) 0.40331 (15) 0.0632 (8)
H10 0.7163 −0.1737 0.4370 0.076*
C11 0.6470 (2) −0.1137 (4) 0.33734 (18) 0.0774 (9)
H11 0.6097 −0.1982 0.3266 0.093*
C12 0.6378 (2) −0.0025 (4) 0.28598 (17) 0.0794 (10)
H12 0.5957 −0.0146 0.2409 0.095*
C13 0.6896 (2) 0.1227 (4) 0.30122 (15) 0.0707 (9)
H13 0.6807 0.1966 0.2671 0.085*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0581 (14) 0.0524 (13) 0.0491 (13) −0.0069 (11) 0.0112 (11) −0.0060 (11)
O1 0.0618 (12) 0.0706 (13) 0.0511 (11) −0.0170 (10) 0.0085 (9) −0.0068 (9)
O2 0.0768 (13) 0.0463 (10) 0.0591 (12) −0.0120 (9) −0.0055 (10) 0.0078 (9)
C1 0.0569 (18) 0.0582 (17) 0.0548 (17) 0.0022 (13) 0.0063 (13) −0.0011 (14)
C2 0.0553 (16) 0.0410 (14) 0.0572 (17) −0.0059 (13) 0.0205 (13) −0.0099 (13)
C3 0.085 (2) 0.0560 (18) 0.076 (2) −0.0235 (16) 0.0195 (17) −0.0080 (15)
C4 0.0559 (17) 0.0381 (14) 0.0474 (15) 0.0028 (12) 0.0152 (13) 0.0019 (12)
C5 0.0582 (16) 0.0398 (14) 0.0458 (15) −0.0022 (13) 0.0176 (13) −0.0033 (12)
C6 0.080 (2) 0.0431 (15) 0.0637 (19) −0.0059 (15) 0.0249 (16) 0.0047 (14)
C7 0.086 (2) 0.0622 (19) 0.0587 (19) 0.0079 (17) 0.0262 (17) 0.0161 (15)
C8 0.0593 (18) 0.0602 (18) 0.0491 (16) 0.0143 (15) 0.0180 (14) 0.0030 (14)
C9 0.0485 (16) 0.0489 (16) 0.0509 (16) 0.0069 (13) 0.0117 (13) −0.0021 (13)
C10 0.0617 (18) 0.0606 (18) 0.0659 (19) −0.0008 (15) 0.0034 (16) −0.0052 (15)
C11 0.064 (2) 0.087 (2) 0.079 (2) −0.0027 (18) −0.0008 (18) −0.0190 (19)
C12 0.061 (2) 0.116 (3) 0.059 (2) 0.016 (2) 0.0015 (16) −0.012 (2)
C13 0.065 (2) 0.094 (2) 0.0537 (19) 0.0235 (19) 0.0121 (16) 0.0088 (17)

Geometric parameters (Å, °)

N1—C2 1.295 (3) C5—C6 1.425 (3)
N1—O1 1.415 (2) C6—C7 1.358 (3)
O1—C1 1.427 (3) C6—H6 0.9300
O2—C4 1.353 (3) C7—C8 1.410 (4)
O2—H2 0.8200 C7—H7 0.9300
C1—C1i 1.490 (5) C8—C13 1.412 (4)
C1—H1A 0.9700 C8—C9 1.426 (3)
C1—H1B 0.9700 C9—C10 1.413 (3)
C2—C5 1.473 (3) C10—C11 1.370 (3)
C2—C3 1.504 (3) C10—H10 0.9300
C3—H3A 0.9600 C11—C12 1.400 (4)
C3—H3B 0.9600 C11—H11 0.9300
C3—H3C 0.9600 C12—C13 1.355 (4)
C4—C5 1.387 (3) C12—H12 0.9300
C4—C9 1.428 (3) C13—H13 0.9300
C2—N1—O1 113.2 (2) C7—C6—C5 122.5 (3)
N1—O1—C1 108.64 (18) C7—C6—H6 118.8
C4—O2—H2 109.5 C5—C6—H6 118.8
O1—C1—C1i 112.64 (18) C6—C7—C8 121.1 (3)
O1—C1—H1A 109.1 C6—C7—H7 119.5
C1i—C1—H1A 109.1 C8—C7—H7 119.5
O1—C1—H1B 109.1 C7—C8—C13 122.9 (3)
C1i—C1—H1B 109.1 C7—C8—C9 118.4 (2)
H1A—C1—H1B 107.8 C13—C8—C9 118.7 (3)
N1—C2—C5 116.6 (2) C10—C9—C8 118.9 (2)
N1—C2—C3 122.7 (2) C10—C9—C4 122.1 (2)
C5—C2—C3 120.8 (2) C8—C9—C4 118.9 (2)
C2—C3—H3A 109.5 C11—C10—C9 120.3 (3)
C2—C3—H3B 109.5 C11—C10—H10 119.8
H3A—C3—H3B 109.5 C9—C10—H10 119.8
C2—C3—H3C 109.5 C10—C11—C12 120.5 (3)
H3A—C3—H3C 109.5 C10—C11—H11 119.8
H3B—C3—H3C 109.5 C12—C11—H11 119.8
O2—C4—C5 122.7 (2) C13—C12—C11 120.7 (3)
O2—C4—C9 115.4 (2) C13—C12—H12 119.7
C5—C4—C9 121.9 (2) C11—C12—H12 119.7
C4—C5—C6 117.2 (2) C12—C13—C8 120.9 (3)
C4—C5—C2 122.8 (2) C12—C13—H13 119.6
C6—C5—C2 120.1 (2) C8—C13—H13 119.6
C2—N1—O1—C1 179.8 (2) C6—C7—C8—C9 2.2 (4)
N1—O1—C1—C1i −75.0 (3) C7—C8—C9—C10 −179.5 (2)
O1—N1—C2—C5 179.31 (19) C13—C8—C9—C10 −0.1 (4)
O1—N1—C2—C3 −0.8 (3) C7—C8—C9—C4 −0.9 (3)
O2—C4—C5—C6 −179.2 (2) C13—C8—C9—C4 178.5 (2)
C9—C4—C5—C6 1.1 (3) O2—C4—C9—C10 −1.9 (3)
O2—C4—C5—C2 1.7 (4) C5—C4—C9—C10 177.9 (2)
C9—C4—C5—C2 −178.1 (2) O2—C4—C9—C8 179.6 (2)
N1—C2—C5—C4 −4.3 (3) C5—C4—C9—C8 −0.7 (3)
C3—C2—C5—C4 175.8 (2) C8—C9—C10—C11 0.6 (4)
N1—C2—C5—C6 176.6 (2) C4—C9—C10—C11 −177.9 (2)
C3—C2—C5—C6 −3.3 (4) C9—C10—C11—C12 0.1 (4)
C4—C5—C6—C7 0.2 (4) C10—C11—C12—C13 −1.5 (5)
C2—C5—C6—C7 179.3 (2) C11—C12—C13—C8 2.1 (5)
C5—C6—C7—C8 −1.8 (4) C7—C8—C13—C12 178.1 (3)
C6—C7—C8—C13 −177.2 (3) C9—C8—C13—C12 −1.3 (4)

Symmetry codes: (i) −x+2, y, −z+3/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2—H2···N1 0.82 1.84 2.562 (3) 146
C10—H10···O2ii 0.93 2.63 3.446 (3) 146

Symmetry codes: (ii) −x+3/2, −y−1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2524).

References

  1. Calligaris, M. & Randaccio, L. (1987). Comprehensive Coordination Chemistry, Vol. 2, edited by G. Wilkinson, pp. 715-738. London: Pergamon.
  2. Dong, W.-K., He, X.-N., Guan, Y.-H., Xu, L. & Ren, Z.-L. (2008c). Acta Cryst. E64, o1600–o1601. [DOI] [PMC free article] [PubMed]
  3. Dong, W.-K., He, X.-N., Li, L., Lv, Z.-W. & Tong, J.-F. (2008a). Acta Cryst. E64, o1405. [DOI] [PMC free article] [PubMed]
  4. Dong, W.-K., Zhao, C.-Y., Zhong, J.-K., Tang, X.-L. & Yu, T.-Z. (2008b). Acta Cryst. E64, o1323. [DOI] [PMC free article] [PubMed]
  5. Sheldrick, G. M. (1996). SADABS University of Goöttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.
  8. Sun, S. S., Stern, C. L., Nguyen, S. T. & Hupp, J. T. (2004). J. Am. Chem. Soc.126, 6314–6326. [DOI] [PubMed]
  9. Wang, L., He, X., Sun, Y. & Xu, L. (2007). Acta Cryst. E63, o4517.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022508/hg2524sup1.cif

e-65-o1598-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022508/hg2524Isup2.hkl

e-65-o1598-Isup2.hkl (93.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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