Abstract
The title compound, C13H17N3S, was synthesized by the reaction of 4-pentylbenzoic acid and thiosemicarbazide. The dihedral angle between the thiadiazole and phenyl rings is 29.9 (2)°. An intramolecular C—H⋯S interaction is observed. In the crystal, intermolecular N—H⋯N hydrogen bonding links the molecules into centrosymmetric dimers.
Related literature
For general background to the biological activity of 1,3,4-thiadiazole derivatives, see: Nakagawa et al. (1996 ▶); Wang et al. (1999 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C13H17N3S
M r = 247.36
Monoclinic,
a = 14.012 (3) Å
b = 9.1300 (18) Å
c = 10.938 (2) Å
β = 100.64 (3)°
V = 1375.2 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.22 mm−1
T = 293 K
0.20 × 0.10 × 0.05 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.958, T max = 0.989
2596 measured reflections
2492 independent reflections
1405 reflections with I > 2σ(I)
R int = 0.023
3 standard reflections every 200 reflections intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.066
wR(F 2) = 0.179
S = 1.00
2492 reflections
148 parameters
1 restraint
H-atom parameters constrained
Δρmax = 0.18 e Å−3
Δρmin = −0.52 e Å−3
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022594/hg2519sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022594/hg2519Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C8—H8A⋯S | 0.93 | 2.81 | 3.177 (4) | 104 |
N3—H3A⋯N2i | 0.86 | 2.15 | 3.006 (4) | 173 |
Symmetry code: (i) .
Acknowledgments
The authors gratefully acknowledge Professor Hua-Qin Wang of the Analysis Center, Nanjing University, for providing the Enraf–Nonius CAD-4 diffractometer for this research project.
supplementary crystallographic information
Comment
1,3,4-Thiadiazole derivatives represent an interesting class of compounds possessing broad spectrum biological activities (Nakagawa et al., 1996). These compounds are known to exhibit diverse biological effects, such as insecticidal, fungicidal activities (Wang et al., 1999). The structure of the title compound, (I), is shown in Fig. 1, in which the bond lengths (Allen et al., 1987) and angles are generally within normal ranges. The dihedral angle between the thiadiazole and phenyl ring is 29.90 (19)°. An intramolecular C—H···S interaction is observed (Fig. 1). There is intermolecular N—H···N hydrogen bond (Fig. 2), forming chains along the c axis. The intermolecular N—H···N hydrogen bond creates centrosymmetric dimers.
Experimental
4-Pentylbenzoic acid (5 mmol) and thiosemicarbazide (5 mmol) were mixed in a 25 ml flask, and kept in the oil bath at 90°C for 6 h. After cooling, the crude product (I) precipitated and was filtered. Pure compound (I) was obtained by crystallization from ethanol(20 ml). Crystals of (I) suitable for X-ray diffraction were obtained by slow evaporation of an acetone solution.
Refinement
All H atoms bonded to the C atoms were placed geometrically at the distances of 0.93–0.97 Å and included in the refinement in riding motion approximation with Uiso(H) = 1.2 or 1.5Ueq of the carrier atom.
Figures
Fig. 1.
A view of the molecular structure of (I). Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate C—H···S short contact distance.
Fig. 2.
Partial packing view showing the hydrogen-bonded network. Dashed lines indicate intermolecular N—H···N hydrogen bond.
Crystal data
C13H17N3S | F(000) = 528 |
Mr = 247.36 | Dx = 1.195 Mg m−3 |
Monoclinic, P21/c | Melting point: 563 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 14.012 (3) Å | Cell parameters from 25 reflections |
b = 9.1300 (18) Å | θ = 8–12° |
c = 10.938 (2) Å | µ = 0.22 mm−1 |
β = 100.64 (3)° | T = 293 K |
V = 1375.2 (5) Å3 | Block, colorless |
Z = 4 | 0.20 × 0.10 × 0.05 mm |
Data collection
Enraf–Nonius CAD-4 diffractometer | 1405 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.023 |
graphite | θmax = 25.3°, θmin = 1.5° |
ω/2θ scans | h = −16→0 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→10 |
Tmin = 0.958, Tmax = 0.989 | l = −12→13 |
2596 measured reflections | 3 standard reflections every 200 reflections |
2492 independent reflections | intensity decay: 1% |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.179 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.09P)2] where P = (Fo2 + 2Fc2)/3 |
2492 reflections | (Δ/σ)max < 0.001 |
148 parameters | Δρmax = 0.18 e Å−3 |
1 restraint | Δρmin = −0.52 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S | 0.10971 (8) | 0.15085 (11) | 0.16795 (8) | 0.0627 (4) | |
N1 | 0.0965 (2) | 0.1921 (3) | −0.0647 (2) | 0.0595 (9) | |
N2 | 0.0606 (2) | 0.3197 (3) | −0.0202 (2) | 0.0596 (9) | |
N3 | 0.0292 (3) | 0.4194 (3) | 0.1651 (2) | 0.0721 (10) | |
H3A | 0.0054 | 0.4985 | 0.1290 | 0.087* | |
H3B | 0.0321 | 0.4085 | 0.2438 | 0.087* | |
C1 | 0.4434 (5) | −0.9308 (7) | 0.1391 (6) | 0.143 | |
H1B | 0.4664 | −0.9713 | 0.2201 | 0.214* | |
H1C | 0.4927 | −0.9409 | 0.0892 | 0.214* | |
H1D | 0.3860 | −0.9820 | 0.1001 | 0.214* | |
C2 | 0.4207 (5) | −0.7748 (8) | 0.1509 (7) | 0.165 (3) | |
H2B | 0.4800 | −0.7243 | 0.1875 | 0.198* | |
H2C | 0.3761 | −0.7660 | 0.2085 | 0.198* | |
C3 | 0.3778 (5) | −0.6986 (7) | 0.0342 (7) | 0.142 (2) | |
H3C | 0.3235 | −0.7561 | −0.0083 | 0.170* | |
H3D | 0.4259 | −0.6949 | −0.0191 | 0.170* | |
C4 | 0.3422 (5) | −0.5426 (6) | 0.0510 (5) | 0.135 (2) | |
H4A | 0.3003 | −0.5452 | 0.1123 | 0.162* | |
H4B | 0.3981 | −0.4828 | 0.0851 | 0.162* | |
C5 | 0.2901 (4) | −0.4706 (5) | −0.0597 (4) | 0.0891 (14) | |
H5A | 0.2378 | −0.5344 | −0.0983 | 0.107* | |
H5B | 0.3340 | −0.4591 | −0.1180 | 0.107* | |
C6 | 0.2473 (3) | −0.3212 (4) | −0.0391 (4) | 0.0714 (12) | |
C7 | 0.1937 (3) | −0.3008 (4) | 0.0533 (4) | 0.0773 (13) | |
H7A | 0.1831 | −0.3795 | 0.1031 | 0.093* | |
C8 | 0.1557 (3) | −0.1657 (4) | 0.0731 (4) | 0.0683 (11) | |
H8A | 0.1218 | −0.1544 | 0.1380 | 0.082* | |
C9 | 0.1665 (3) | −0.0480 (4) | 0.0002 (3) | 0.0555 (9) | |
C10 | 0.2190 (3) | −0.0673 (4) | −0.0951 (3) | 0.0708 (12) | |
H10A | 0.2275 | 0.0106 | −0.1467 | 0.085* | |
C11 | 0.2583 (3) | −0.2025 (5) | −0.1123 (4) | 0.0742 (12) | |
H11A | 0.2935 | −0.2138 | −0.1759 | 0.089* | |
C12 | 0.1252 (3) | 0.0956 (4) | 0.0207 (3) | 0.0548 (9) | |
C13 | 0.0617 (3) | 0.3139 (4) | 0.0991 (3) | 0.0552 (9) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S | 0.0965 (8) | 0.0583 (6) | 0.0329 (5) | 0.0097 (6) | 0.0112 (4) | 0.0063 (4) |
N1 | 0.084 (2) | 0.059 (2) | 0.0356 (14) | 0.0052 (17) | 0.0115 (14) | 0.0018 (14) |
N2 | 0.087 (2) | 0.061 (2) | 0.0311 (14) | 0.0078 (17) | 0.0113 (14) | 0.0040 (13) |
N3 | 0.125 (3) | 0.060 (2) | 0.0326 (15) | 0.023 (2) | 0.0179 (17) | 0.0032 (14) |
C1 | 0.143 | 0.143 | 0.143 | 0.000 | 0.024 | 0.000 |
C2 | 0.162 (7) | 0.139 (6) | 0.190 (8) | 0.050 (5) | 0.024 (6) | 0.014 (6) |
C3 | 0.138 (6) | 0.117 (5) | 0.170 (7) | 0.033 (4) | 0.024 (5) | 0.002 (5) |
C4 | 0.157 (6) | 0.103 (4) | 0.129 (5) | 0.064 (4) | −0.016 (4) | −0.027 (4) |
C5 | 0.112 (4) | 0.073 (3) | 0.080 (3) | 0.014 (3) | 0.013 (3) | −0.015 (3) |
C6 | 0.089 (3) | 0.066 (3) | 0.055 (2) | 0.008 (2) | 0.001 (2) | −0.009 (2) |
C7 | 0.110 (4) | 0.059 (3) | 0.067 (3) | −0.003 (2) | 0.025 (3) | 0.002 (2) |
C8 | 0.094 (3) | 0.055 (2) | 0.059 (2) | 0.005 (2) | 0.024 (2) | 0.0064 (19) |
C9 | 0.065 (2) | 0.063 (2) | 0.0365 (17) | 0.002 (2) | 0.0058 (16) | −0.0017 (17) |
C10 | 0.098 (3) | 0.068 (3) | 0.050 (2) | 0.007 (2) | 0.024 (2) | 0.003 (2) |
C11 | 0.095 (3) | 0.078 (3) | 0.051 (2) | 0.015 (3) | 0.017 (2) | −0.004 (2) |
C12 | 0.067 (2) | 0.059 (2) | 0.0358 (17) | −0.0042 (19) | 0.0041 (16) | 0.0006 (16) |
C13 | 0.075 (3) | 0.054 (2) | 0.0349 (17) | 0.0020 (19) | 0.0045 (16) | 0.0047 (16) |
Geometric parameters (Å, °)
S—C12 | 1.739 (3) | C4—C5 | 1.451 (6) |
S—C13 | 1.746 (3) | C4—H4A | 0.9700 |
N1—C12 | 1.293 (4) | C4—H4B | 0.9700 |
N1—N2 | 1.392 (4) | C5—C6 | 1.524 (5) |
N2—C13 | 1.304 (4) | C5—H5A | 0.9700 |
N3—C13 | 1.333 (4) | C5—H5B | 0.9700 |
N3—H3A | 0.8600 | C6—C11 | 1.373 (5) |
N3—H3B | 0.8600 | C6—C7 | 1.378 (6) |
C1—C2 | 1.471 (6) | C7—C8 | 1.377 (5) |
C1—H1B | 0.9600 | C7—H7A | 0.9300 |
C1—H1C | 0.9600 | C8—C9 | 1.362 (5) |
C1—H1D | 0.9600 | C8—H8A | 0.9300 |
C2—C3 | 1.480 (8) | C9—C10 | 1.393 (5) |
C2—H2B | 0.9700 | C9—C12 | 1.467 (5) |
C2—H2C | 0.9700 | C10—C11 | 1.379 (5) |
C3—C4 | 1.531 (7) | C10—H10A | 0.9300 |
C3—H3C | 0.9700 | C11—H11A | 0.9300 |
C3—H3D | 0.9700 | ||
C12—S—C13 | 87.26 (17) | C4—C5—C6 | 115.6 (4) |
C12—N1—N2 | 113.7 (3) | C4—C5—H5A | 108.4 |
C13—N2—N1 | 112.3 (3) | C6—C5—H5A | 108.4 |
C13—N3—H3A | 120.0 | C4—C5—H5B | 108.4 |
C13—N3—H3B | 120.0 | C6—C5—H5B | 108.4 |
H3A—N3—H3B | 120.0 | H5A—C5—H5B | 107.4 |
C2—C1—H1B | 109.5 | C11—C6—C7 | 117.2 (4) |
C2—C1—H1C | 109.5 | C11—C6—C5 | 122.0 (4) |
H1B—C1—H1C | 109.5 | C7—C6—C5 | 120.8 (4) |
C2—C1—H1D | 109.5 | C8—C7—C6 | 121.0 (4) |
H1B—C1—H1D | 109.5 | C8—C7—H7A | 119.5 |
H1C—C1—H1D | 109.5 | C6—C7—H7A | 119.5 |
C1—C2—C3 | 116.1 (6) | C9—C8—C7 | 121.8 (4) |
C1—C2—H2B | 108.3 | C9—C8—H8A | 119.1 |
C3—C2—H2B | 108.3 | C7—C8—H8A | 119.1 |
C1—C2—H2C | 108.3 | C8—C9—C10 | 118.0 (4) |
C3—C2—H2C | 108.3 | C8—C9—C12 | 121.7 (3) |
H2B—C2—H2C | 107.4 | C10—C9—C12 | 120.3 (3) |
C2—C3—C4 | 115.0 (6) | C11—C10—C9 | 119.7 (4) |
C2—C3—H3C | 108.5 | C11—C10—H10A | 120.2 |
C4—C3—H3C | 108.5 | C9—C10—H10A | 120.2 |
C2—C3—H3D | 108.5 | C6—C11—C10 | 122.4 (4) |
C4—C3—H3D | 108.5 | C6—C11—H11A | 118.8 |
H3C—C3—H3D | 107.5 | C10—C11—H11A | 118.8 |
C5—C4—C3 | 116.5 (5) | N1—C12—C9 | 125.3 (3) |
C5—C4—H4A | 108.2 | N1—C12—S | 113.3 (3) |
C3—C4—H4A | 108.2 | C9—C12—S | 121.4 (3) |
C5—C4—H4B | 108.2 | N2—C13—N3 | 124.8 (3) |
C3—C4—H4B | 108.2 | N2—C13—S | 113.4 (3) |
H4A—C4—H4B | 107.3 | N3—C13—S | 121.7 (2) |
C12—N1—N2—C13 | −1.4 (5) | C5—C6—C11—C10 | 179.4 (4) |
C1—C2—C3—C4 | 172.2 (6) | C9—C10—C11—C6 | 0.4 (7) |
C2—C3—C4—C5 | −173.4 (6) | N2—N1—C12—C9 | −179.7 (3) |
C3—C4—C5—C6 | 174.6 (5) | N2—N1—C12—S | 0.8 (4) |
C4—C5—C6—C11 | 133.0 (5) | C8—C9—C12—N1 | −150.2 (4) |
C4—C5—C6—C7 | −48.4 (7) | C10—C9—C12—N1 | 30.3 (6) |
C11—C6—C7—C8 | −2.0 (7) | C8—C9—C12—S | 29.2 (5) |
C5—C6—C7—C8 | 179.4 (4) | C10—C9—C12—S | −150.3 (3) |
C6—C7—C8—C9 | 2.2 (7) | C13—S—C12—N1 | −0.1 (3) |
C7—C8—C9—C10 | −1.0 (6) | C13—S—C12—C9 | −179.6 (3) |
C7—C8—C9—C12 | 179.5 (4) | N1—N2—C13—N3 | −178.2 (4) |
C8—C9—C10—C11 | −0.2 (6) | N1—N2—C13—S | 1.3 (4) |
C12—C9—C10—C11 | 179.3 (4) | C12—S—C13—N2 | −0.7 (3) |
C7—C6—C11—C10 | 0.7 (7) | C12—S—C13—N3 | 178.8 (3) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···S | 0.93 | 2.81 | 3.177 (4) | 104 |
N3—H3A···N2i | 0.86 | 2.15 | 3.006 (4) | 173 |
Symmetry codes: (i) −x, −y+1, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2519).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Enraf–Nonius (1989). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- Nakagawa, Y., Nishimura, K., Izumi, K., Kinoshita, K., Kimura, T. & Kurihara, N. (1996). J. Pestic. Sci.21, 195–201.
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wang, Y. G., Cao, L., Yan, J., Ye, W. F., Zhou, Q. C. & Lu, B. X. (1999). Chem. J. Chin. Univ.20, 1903–1905.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022594/hg2519sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022594/hg2519Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report