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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jun 6;65(Pt 7):o1468. doi: 10.1107/S1600536809020285

4-Methyl-3-(2-phenoxy­acet­yl)-5-phenyl-1,3,4-oxadiazinan-2-one

Julio Zukerman-Schpector a,*, Lucas Sousa Madureira a, Alessandro Rodrigues b, Elisângela Vinhato b, Paulo R Olivato b
PMCID: PMC2969466  PMID: 21582771

Abstract

The 1,3,4-oxadiazinane ring in the title compound, C18H18N2O4, is in a twisted boat conformation. The two carbonyl groups are orientated towards the same side of the mol­ecule. The dihedral angle between the planes of the benzene rings is 76.6 (3)°. Mol­ecules are sustained in the three-dimensional structure by a combination of C—H⋯O, C—H⋯π and π–π [shortest centroid–centroid distance = 3.672 (6) Å] inter­actions.

Related literature

For synthetic and structural studies of substituted heterocyclic rings, see: Rodrigues et al. (2006). For puckering parameters, see: Cremer & Pople (1975); Iulek & Zukerman-Schpector (1997). For the synthesis, see: Rodrigues et al. (2005).graphic file with name e-65-o1468-scheme1.jpg

Experimental

Crystal data

  • C18H18N2O4

  • M r = 326.34

  • Monoclinic, Inline graphic

  • a = 9.6024 (9) Å

  • b = 9.4203 (10) Å

  • c = 19.275 (3) Å

  • β = 114.206 (9)°

  • V = 1590.3 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 290 K

  • 0.15 × 0.10 × 0.08 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: none

  • 2971 measured reflections

  • 2793 independent reflections

  • 1355 reflections with I > 2σ(I)

  • R int = 0.030

  • 3 standard reflections frequency: 60 min intensity decay: <1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.064

  • wR(F 2) = 0.246

  • S = 1.12

  • 2793 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999), PARST (Nardelli, 1995) and MarvinSketch (ChemAxon, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020285/tk2466sup1.cif

e-65-o1468-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020285/tk2466Isup2.hkl

e-65-o1468-Isup2.hkl (134.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C7—H7⋯O4i 0.93 2.53 3.394 (7) 154
C9—H9⋯O3ii 0.93 2.61 3.383 (8) 141
C13—H13⋯Cg2iii 0.93 2.86 3.715 (6) 153
C18—H18BCg3i 0.96 2.74 3.672 (6) 165

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic. Cg2 is the centroid of the C6–C11 ring and Cg3 is the centroid of the C12–C17 ring.

Acknowledgments

We thank FAPESP (2008/02531–5 to JZ—S; 2003/05520–0 to AR), CNPq and CAPES for financial support.

supplementary crystallographic information

Comment

In continuation of synthetic and structural studies of substituted heterocyclic rings (Rodrigues et al., 2006), the title compound (I) was prepared. The 1,3,4-oxadiazinane ring in (I), Fig. 1, is in a distorted twist boat conformation with the distortion being towards a boat conformation. The ring-puckering parameters (Cremer & Pople, 1975; Iulek & Zukerman-Schpector, 1997) were calculated as q2 = 0.119 (6) Å, q3 = -0.496 (6) Å, Q = 0.510 (6) Å, and φ2 = -108 (3)°. The ring- and side-chain-bound carbonyl groups lie to the same side of the molecule. The dihedral angle between the phenyl rings is of 76.6 (3)°. Molecules are sustained in the 3-D structure by a combination of C-H···O and π–π interactions, Table 1.

Experimental

The starting (R)-4-methyl-5-phenyl-1,3,4-oxadiazinan-2-one was synthesized by using a previously reported procedure (Rodrigues et al. 2005). The phenoxyacetyl-1,3,4-oxadiazinan-2-one derivative was prepared by an acylation reaction of 1,3,4-oxadiazinan-2-one (Rodrigues et al. 2005). To a mixture of 1,3,4-oxadiazinan-2-one (500 mg, 2.60 mmol), 4-dimethylaminopyridine (16 mg, 0.13 mmol) and 2-phenoxyacetic acid (435 mg, 2.86 mmol) in CH2Cl2 (4 ml) at 273 K, under a nitrogen atmosphere, N,N-Dicyclohexylcarbodiimide was added in one portion (590 mg, 2.86 mmol). The temperature of the resulting suspension was allowed to reach room temperature. Stirring was continued until no starting material was left, as confirmed by TLC (20 h). The dicyclohexylurea formed was filtered and the precipitate washed with CH2Cl2 (20 ml). The filtrate was washed with a saturated aqueous solution of NaHCO3 (15 ml) and dried over Na2SO4. Filtration and evaporation yielded the crude solid, which was purified by flash chromatography on silica gel (hexane-EtOAc, 6:4). Colourless crystals of (I) were obtained by vapour diffusion from hexane/chloroform at 298 K.

Refinement

The H atoms were positioned with idealized geometry using a riding model with C—H = 0.93–0.98 Å, and with Uiso set to 1.2 times (1.5 for methyl) Ueq(parent atom).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing atom labelling scheme and displacement ellipsoids at the 50% probability level (arbitrary spheres for the H atoms).

Crystal data

C18H18N2O4 F(000) = 688
Mr = 326.34 Dx = 1.363 Mg m3
Monoclinic, P21/c Melting point = 385–387 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 9.6024 (9) Å Cell parameters from 24 reflections
b = 9.4203 (10) Å θ = 10.5–15.1°
c = 19.275 (3) Å µ = 0.10 mm1
β = 114.206 (9)° T = 290 K
V = 1590.3 (4) Å3 Irregular, colourless
Z = 4 0.15 × 0.10 × 0.08 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Rint = 0.030
Radiation source: fine-focus sealed tube θmax = 25.0°, θmin = 2.3°
graphite h = −11→0
ω–2θ scans k = 0→11
2971 measured reflections l = −20→20
2793 independent reflections 3 standard reflections every 60 min
1355 reflections with I > 2σ(I) intensity decay: <1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.246 H-atom parameters constrained
S = 1.12 w = 1/[σ2(Fo2) + (0.0852P)2 + 2.8996P] where P = (Fo2 + 2Fc2)/3
2793 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.19 e Å3
0 restraints Δρmin = −0.23 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6770 (6) 0.3140 (6) −0.0050 (3) 0.0504 (14)
H1 0.6177 0.3840 −0.0433 0.060*
C2 0.5715 (6) 0.1861 (6) −0.0126 (4) 0.0676 (18)
H2A 0.5123 0.2040 0.0169 0.081*
H2B 0.5008 0.1758 −0.0655 0.081*
C3 0.8059 (6) 0.0406 (6) 0.0376 (3) 0.0530 (14)
C4 1.0422 (5) 0.1778 (6) 0.0667 (3) 0.0411 (12)
C5 1.0994 (5) 0.3123 (6) 0.0478 (3) 0.0492 (13)
H5A 1.0756 0.3145 −0.0062 0.059*
H5B 1.0487 0.3921 0.0593 0.059*
C6 0.7359 (5) 0.3870 (6) 0.0714 (3) 0.0419 (12)
C7 0.7468 (6) 0.5357 (6) 0.0737 (3) 0.0550 (14)
H7 0.7155 0.5862 0.0284 0.066*
C8 0.8025 (8) 0.6080 (7) 0.1415 (4) 0.0690 (18)
H8 0.8055 0.7067 0.1416 0.083*
C9 0.8541 (7) 0.5350 (9) 0.2091 (4) 0.0735 (19)
H9 0.8956 0.5837 0.2551 0.088*
C10 0.8439 (7) 0.3903 (8) 0.2083 (3) 0.0643 (17)
H10 0.8769 0.3407 0.2539 0.077*
C11 0.7850 (6) 0.3167 (7) 0.1400 (3) 0.0596 (16)
H11 0.7784 0.2182 0.1405 0.071*
C12 1.3081 (6) 0.3918 (6) 0.1593 (3) 0.0452 (12)
C13 1.4569 (5) 0.4434 (6) 0.1878 (3) 0.0498 (14)
H13 1.5174 0.4293 0.1612 0.060*
C18 0.7580 (7) 0.2267 (6) −0.1031 (3) 0.0593 (16)
H18A 0.8470 0.2022 −0.1114 0.089*
H18B 0.7058 0.3041 −0.1358 0.089*
H18C 0.6912 0.1461 −0.1141 0.089*
C14 1.5132 (6) 0.5148 (6) 0.2553 (3) 0.0573 (15)
H14 1.6120 0.5508 0.2739 0.069*
C15 1.4279 (7) 0.5343 (7) 0.2958 (3) 0.0640 (17)
H15 1.4668 0.5849 0.3412 0.077*
C16 1.2833 (7) 0.4782 (7) 0.2689 (3) 0.0650 (16)
H16 1.2256 0.4878 0.2973 0.078*
C17 1.2231 (6) 0.4082 (6) 0.2007 (3) 0.0544 (14)
H17 1.1244 0.3719 0.1826 0.065*
N1 0.8837 (4) 0.1580 (4) 0.0262 (2) 0.0420 (10)
N2 0.8042 (4) 0.2689 (4) −0.0233 (2) 0.0383 (10)
O1 0.6553 (4) 0.0565 (4) 0.0129 (3) 0.0744 (13)
O2 0.8648 (5) −0.0680 (4) 0.0671 (3) 0.0712 (12)
O3 1.1208 (4) 0.0946 (4) 0.1131 (2) 0.0611 (11)
O4 1.2593 (4) 0.3245 (4) 0.0898 (2) 0.0569 (11)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.041 (3) 0.043 (3) 0.057 (3) 0.004 (2) 0.010 (2) 0.003 (3)
C2 0.041 (3) 0.054 (4) 0.098 (5) −0.001 (3) 0.019 (3) 0.001 (3)
C3 0.046 (3) 0.046 (3) 0.066 (4) −0.001 (3) 0.022 (3) 0.003 (3)
C4 0.041 (3) 0.044 (3) 0.035 (3) 0.009 (2) 0.012 (2) 0.000 (2)
C5 0.036 (3) 0.063 (4) 0.044 (3) −0.001 (3) 0.012 (2) 0.000 (3)
C6 0.037 (3) 0.044 (3) 0.049 (3) 0.005 (2) 0.022 (2) 0.004 (3)
C7 0.062 (4) 0.051 (3) 0.057 (3) 0.001 (3) 0.029 (3) 0.003 (3)
C8 0.089 (5) 0.056 (4) 0.073 (4) −0.013 (4) 0.045 (4) −0.018 (4)
C9 0.066 (4) 0.100 (6) 0.063 (4) −0.003 (4) 0.035 (3) −0.020 (4)
C10 0.067 (4) 0.082 (5) 0.053 (4) 0.019 (4) 0.034 (3) 0.014 (4)
C11 0.058 (4) 0.058 (4) 0.070 (4) 0.005 (3) 0.034 (3) 0.011 (3)
C12 0.040 (3) 0.046 (3) 0.047 (3) 0.005 (2) 0.016 (2) 0.001 (3)
C13 0.034 (3) 0.057 (3) 0.054 (3) 0.003 (3) 0.014 (2) 0.004 (3)
C18 0.059 (3) 0.057 (4) 0.046 (3) 0.007 (3) 0.005 (3) −0.004 (3)
C14 0.039 (3) 0.062 (4) 0.058 (3) −0.003 (3) 0.007 (3) 0.005 (3)
C15 0.063 (4) 0.066 (4) 0.053 (3) 0.002 (3) 0.014 (3) −0.016 (3)
C16 0.068 (4) 0.066 (4) 0.068 (4) −0.001 (3) 0.035 (3) −0.015 (3)
C17 0.046 (3) 0.053 (3) 0.065 (4) −0.013 (3) 0.024 (3) −0.016 (3)
N1 0.038 (2) 0.038 (2) 0.048 (2) 0.0001 (19) 0.0159 (19) 0.006 (2)
N2 0.036 (2) 0.041 (2) 0.035 (2) 0.0063 (18) 0.0121 (17) 0.0054 (18)
O1 0.047 (2) 0.046 (2) 0.125 (4) −0.0046 (19) 0.030 (2) 0.012 (2)
O2 0.078 (3) 0.040 (2) 0.099 (3) 0.008 (2) 0.040 (2) 0.024 (2)
O3 0.054 (2) 0.056 (2) 0.058 (2) 0.009 (2) 0.0075 (18) 0.009 (2)
O4 0.0379 (19) 0.080 (3) 0.050 (2) −0.0048 (19) 0.0159 (16) −0.015 (2)

Geometric parameters (Å, °)

C1—N2 1.466 (6) C9—C10 1.366 (9)
C1—C6 1.511 (7) C9—H9 0.9300
C1—C2 1.542 (8) C10—C11 1.386 (8)
C1—H1 0.9800 C10—H10 0.9300
C2—O1 1.433 (7) C11—H11 0.9300
C2—H2A 0.9700 C12—C17 1.365 (7)
C2—H2B 0.9700 C12—O4 1.378 (6)
C3—O2 1.194 (6) C12—C13 1.391 (7)
C3—O1 1.332 (6) C13—C14 1.364 (8)
C3—N1 1.402 (7) C13—H13 0.9300
C4—O3 1.195 (6) C18—N2 1.469 (6)
C4—N1 1.410 (6) C18—H18A 0.9600
C4—C5 1.484 (7) C18—H18B 0.9600
C5—O4 1.417 (6) C18—H18C 0.9600
C5—H5A 0.9700 C14—C15 1.355 (9)
C5—H5B 0.9700 C14—H14 0.9300
C6—C11 1.378 (7) C15—C16 1.373 (8)
C6—C7 1.404 (8) C15—H15 0.9300
C7—C8 1.372 (8) C16—C17 1.369 (7)
C7—H7 0.9300 C16—H16 0.9300
C8—C9 1.374 (9) C17—H17 0.9300
C8—H8 0.9300 N1—N2 1.410 (5)
N2—C1—C6 110.6 (4) C9—C10—H10 119.7
N2—C1—C2 109.3 (4) C11—C10—H10 119.7
C6—C1—C2 114.7 (5) C6—C11—C10 121.1 (6)
N2—C1—H1 107.3 C6—C11—H11 119.5
C6—C1—H1 107.3 C10—C11—H11 119.5
C2—C1—H1 107.3 C17—C12—O4 125.0 (5)
O1—C2—C1 112.2 (4) C17—C12—C13 119.5 (5)
O1—C2—H2A 109.2 O4—C12—C13 115.5 (5)
C1—C2—H2A 109.2 C14—C13—C12 119.4 (5)
O1—C2—H2B 109.2 C14—C13—H13 120.3
C1—C2—H2B 109.2 C12—C13—H13 120.3
H2A—C2—H2B 107.9 N2—C18—H18A 109.5
O2—C3—O1 119.9 (5) N2—C18—H18B 109.5
O2—C3—N1 124.9 (5) H18A—C18—H18B 109.5
O1—C3—N1 115.2 (5) N2—C18—H18C 109.5
O3—C4—N1 122.3 (5) H18A—C18—H18C 109.5
O3—C4—C5 124.0 (5) H18B—C18—H18C 109.5
N1—C4—C5 113.6 (4) C15—C14—C13 121.3 (5)
O4—C5—C4 110.6 (4) C15—C14—H14 119.4
O4—C5—H5A 109.5 C13—C14—H14 119.4
C4—C5—H5A 109.5 C14—C15—C16 119.1 (5)
O4—C5—H5B 109.5 C14—C15—H15 120.5
C4—C5—H5B 109.5 C16—C15—H15 120.5
H5A—C5—H5B 108.1 C17—C16—C15 120.8 (6)
C11—C6—C7 117.3 (5) C17—C16—H16 119.6
C11—C6—C1 124.1 (5) C15—C16—H16 119.6
C7—C6—C1 118.6 (5) C12—C17—C16 119.8 (5)
C8—C7—C6 121.4 (6) C12—C17—H17 120.1
C8—C7—H7 119.3 C16—C17—H17 120.1
C6—C7—H7 119.3 C3—N1—N2 121.0 (4)
C7—C8—C9 120.2 (6) C3—N1—C4 122.8 (4)
C7—C8—H8 119.9 N2—N1—C4 116.0 (4)
C9—C8—H8 119.9 N1—N2—C1 109.0 (4)
C10—C9—C8 119.5 (6) N1—N2—C18 110.8 (4)
C10—C9—H9 120.3 C1—N2—C18 114.0 (4)
C8—C9—H9 120.3 C3—O1—C2 126.3 (4)
C9—C10—C11 120.6 (6) C12—O4—C5 116.7 (4)
N2—C1—C2—O1 37.4 (7) C15—C16—C17—C12 1.0 (10)
C6—C1—C2—O1 −87.4 (6) O2—C3—N1—N2 165.9 (5)
O3—C4—C5—O4 2.4 (7) O1—C3—N1—N2 −14.2 (7)
N1—C4—C5—O4 −179.3 (4) O2—C3—N1—C4 −18.8 (9)
N2—C1—C6—C11 −82.9 (6) O1—C3—N1—C4 161.1 (5)
C2—C1—C6—C11 41.2 (7) O3—C4—N1—C3 0.8 (8)
N2—C1—C6—C7 94.9 (6) C5—C4—N1—C3 −177.6 (5)
C2—C1—C6—C7 −141.0 (5) O3—C4—N1—N2 176.3 (4)
C11—C6—C7—C8 −0.6 (8) C5—C4—N1—N2 −2.0 (6)
C1—C6—C7—C8 −178.5 (5) C3—N1—N2—C1 49.4 (6)
C6—C7—C8—C9 2.2 (9) C4—N1—N2—C1 −126.2 (4)
C7—C8—C9—C10 −2.5 (10) C3—N1—N2—C18 −76.8 (6)
C8—C9—C10—C11 1.2 (10) C4—N1—N2—C18 107.6 (5)
C7—C6—C11—C10 −0.6 (8) C6—C1—N2—N1 68.9 (5)
C1—C6—C11—C10 177.1 (5) C2—C1—N2—N1 −58.2 (5)
C9—C10—C11—C6 0.3 (9) C6—C1—N2—C18 −166.8 (4)
C17—C12—C13—C14 −2.7 (8) C2—C1—N2—C18 66.1 (6)
O4—C12—C13—C14 178.3 (5) O2—C3—O1—C2 169.7 (6)
C12—C13—C14—C15 1.2 (9) N1—C3—O1—C2 −10.2 (9)
C13—C14—C15—C16 1.4 (9) C1—C2—O1—C3 −3.0 (9)
C14—C15—C16—C17 −2.5 (10) C17—C12—O4—C5 21.0 (8)
O4—C12—C17—C16 −179.5 (5) C13—C12—O4—C5 −160.0 (5)
C13—C12—C17—C16 1.6 (9) C4—C5—O4—C12 −90.5 (6)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C7—H7···O4i 0.93 2.53 3.394 (7) 154
C9—H9···O3ii 0.93 2.61 3.383 (8) 141
C13—H13···Cg2iii 0.93 2.86 3.715 (6) 153
C18—H18B···Cg3i 0.96 2.74 3.672 (6) 165

Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+2, y+1/2, −z+1/2; (iii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2466).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst.32, 115–119.
  2. ChemAxon (2008). MarvinSketch ChemAxon Kft, Budapest, Hungary. URL: http://www.chemaxon.com.
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  4. Enraf–Nonius (1994). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
  5. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  6. Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
  7. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  8. Iulek, J. & Zukerman-Schpector, J. (1997). Quim. Nova, 20, 433–434.
  9. Nardelli, M. (1995). J. Appl. Cryst.28, 659.
  10. Rodrigues, A., Olivato, P. R. & Rittner, R. (2005). Synthesis, pp. 2578–2582.
  11. Rodrigues, A., Olivato, P. R., Zukerman-Schpector, J. & Rittner, R. (2006). Z. Kristallogr.221, 226–230.
  12. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020285/tk2466sup1.cif

e-65-o1468-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020285/tk2466Isup2.hkl

e-65-o1468-Isup2.hkl (134.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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