Abstract
In the title compound, C13H18O5S, the five-membered ring has an envelope conformation. The packing involves four C—H⋯O interactions, three of which combine to form layers of molecules parallel to the bc plane.
Related literature
For related literature, see: Baer & Fischer (1948 ▶); Jones et al. (2003 ▶); Kazemi et al. (2007 ▶); Ouchi et al. (1990 ▶). The structure of a related derivative is presented in the following paper, see: Kuś et al. (2009 ▶).
Experimental
Crystal data
C13H18O5S
M r = 286.33
Monoclinic,
a = 15.143 (2) Å
b = 5.7297 (9) Å
c = 15.665 (2) Å
β = 90.385 (3)°
V = 1359.2 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.25 mm−1
T = 133 K
0.40 × 0.20 × 0.05 mm
Data collection
Bruker SMART 1000 CCD area-detector diffractometer
Absorption correction: none
12509 measured reflections
3357 independent reflections
2339 reflections with I > 2σ(I)
R int = 0.111
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.114
S = 1.05
3357 reflections
175 parameters
H-atom parameters constrained
Δρmax = 0.31 e Å−3
Δρmin = −0.48 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1994 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015037/bt2935sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015037/bt2935Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C16—H16⋯O1i | 0.95 | 2.60 | 3.212 (2) | 122 |
| C17—H17C⋯O1ii | 0.98 | 2.65 | 3.369 (3) | 131 |
| C17—H17B⋯O1iii | 0.98 | 2.66 | 3.558 (3) | 153 |
| C5—H5A⋯O2iv | 0.98 | 2.64 | 3.509 (3) | 148 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
Financial support by the Polish State Committee for Scientific Research (grant No. R 05 043 03) is gratefully acknowledged.
supplementary crystallographic information
Comment
Isopropylidene and tosyl groups are often used as protecting or activating units in polyhydroxyalkyl compounds used for synthesis of sugar-like derivatives. Recently we described the crystal structure of L-arabitol tosylate protected by two isopropylidene groups (Jones et al., 2003). D,L-Isopropylideneglycerol is an important substrate for the synthesis of many derivatives of glycerol; the isopropylidene protecting group is a convenient form of protection for the two vicinal hydroxyls in the molecule of glycerol. After the reaction at the third, free hydroxyl group, acid hydrolysis of the protecting group leads to 1-O-substituted glycerol derivatives. In our experiments we used commercial (Aldrich) solketal as precursor for the protecting group. Tosylation of this compound leads to compound 1 (Baer & Fischer, 1948; Ouchi et al. 1990; Kazemi et al. 2007).
The molecule is shown in Fig. 1. Bond lengths and angles may be regarded as normal. The five-membered ring displays an envelope conformation, with approximate local mirror symmetry about O5 and the midpoint of C2—O4. The chain of five atoms from S to C3 displays an extended conformation, with torsion angles close to ±180°.
There are four weak C—H···O interactions with H···O between 2.6 and 2.7 Å. Three of these combine to form layers of molecules parallel to the bc plane at x≈ 1/4 (Fig. 2) and 3/4.
The structure of a related derivative is presented in the following paper (Kuś et al., 2009).
Experimental
The compound 1 was obtained according to method described by Kazemi et al. (2007). The analytical and spectroscopic data are consistent with the literature. Single crystals suitable for X-ray analysis were obtained by slow evaporation from petroleum ether.
NMR data: 1H NMR (CDCl3, 400 MHz): δ 7.80 (d, 2H), 7.35 (d, 2H), 4.28 (q, 1H), 4.06–3.95 (m, 3H), 3.78–3.75 (dd, 1H), 2.45 (s, 3H), 1.34 (s, 3H), 1.31 (s, 3H). - 13C NMR (100 MHz): δ 145.21, 132.81, 130.06, 128.15, 110.20, 73.05, 69.62, 66.35, 26.77, 25.28, 21.80.
IR data: —S(O2)—O— vibrations at 1177 (versus) and 1348 cm-1 (s); 1,3-dioxalone ring at 971 cm-1. There are no bands above 2990 cm-1.
Refinement
Methyl H atoms were identified in difference syntheses and refined as idealized rigid groups (C—H 0.98 Å, H—C—H 109.5°) allowed to rotate but not tip. Other H atoms were included at calculated positions and refined using a riding model, with fixed C—H bond lengths of 0.95 Å (CH, aromatic), 0.99 Å (CH2) and 1.00 Å (CH, sp3); Uiso(H) values were fixed at 1.2Ueq of the parent C atom (1.2Ueq for methyl H).
Figures
Fig. 1.
The title compound in the crystal structure. Displacement ellipsoids represent 50% probability levels.
Fig. 2.
Packing diagram of the title compound in the region x≈ 1/4. H atoms not involved in H bonding (thick dashed lines) are omitted for clarity.
Crystal data
| C13H18O5S | Dx = 1.399 Mg m−3 |
| Mr = 286.33 | Melting point: 321 K |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 15.143 (2) Å | Cell parameters from 5579 reflections |
| b = 5.7297 (9) Å | θ = 2.6–29.6° |
| c = 15.665 (2) Å | µ = 0.25 mm−1 |
| β = 90.385 (3)° | T = 133 K |
| V = 1359.2 (4) Å3 | Lath, colourless |
| Z = 4 | 0.40 × 0.20 × 0.05 mm |
| F(000) = 608 |
Data collection
| Bruker SMART 1000 CCD area-detector diffractometer | 2339 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.111 |
| graphite | θmax = 28.3°, θmin = 1.3° |
| Detector resolution: 8.192 pixels mm-1 | h = −19→20 |
| ω scans | k = −7→7 |
| 12509 measured reflections | l = −20→20 |
| 3357 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.114 | H-atom parameters constrained |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0462P)2 + 0.1472P] where P = (Fo2 + 2Fc2)/3 |
| 3357 reflections | (Δ/σ)max = 0.001 |
| 175 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S | 0.20851 (4) | 0.79423 (9) | 0.35153 (3) | 0.01847 (14) | |
| O1 | 0.14179 (11) | 0.9403 (3) | 0.38666 (8) | 0.0271 (4) | |
| O2 | 0.28879 (11) | 0.8986 (3) | 0.32446 (9) | 0.0287 (4) | |
| O3 | 0.22741 (10) | 0.6118 (2) | 0.42410 (8) | 0.0194 (3) | |
| O4 | 0.31609 (11) | 0.4304 (3) | 0.56622 (8) | 0.0278 (4) | |
| O5 | 0.44258 (10) | 0.2270 (3) | 0.54736 (8) | 0.0243 (4) | |
| C1 | 0.30372 (15) | 0.4563 (4) | 0.41503 (12) | 0.0229 (5) | |
| H1A | 0.3592 | 0.5478 | 0.4141 | 0.027* | |
| H1B | 0.2991 | 0.3661 | 0.3613 | 0.027* | |
| C2 | 0.30289 (15) | 0.2953 (4) | 0.49053 (11) | 0.0210 (4) | |
| H2 | 0.2455 | 0.2093 | 0.4932 | 0.025* | |
| C3 | 0.38036 (15) | 0.1234 (4) | 0.49008 (13) | 0.0243 (5) | |
| H3A | 0.3618 | −0.0325 | 0.5105 | 0.029* | |
| H3B | 0.4053 | 0.1077 | 0.4321 | 0.029* | |
| C4 | 0.39249 (14) | 0.3442 (4) | 0.61038 (12) | 0.0197 (5) | |
| C5 | 0.36304 (18) | 0.1785 (4) | 0.67969 (13) | 0.0322 (6) | |
| H5A | 0.3210 | 0.2579 | 0.7171 | 0.048* | |
| H5B | 0.4145 | 0.1280 | 0.7132 | 0.048* | |
| H5C | 0.3346 | 0.0420 | 0.6537 | 0.048* | |
| C6 | 0.44515 (18) | 0.5465 (5) | 0.64354 (15) | 0.0371 (6) | |
| H6A | 0.4604 | 0.6501 | 0.5961 | 0.056* | |
| H6B | 0.4994 | 0.4889 | 0.6708 | 0.056* | |
| H6C | 0.4102 | 0.6327 | 0.6854 | 0.056* | |
| C11 | 0.16470 (14) | 0.6269 (3) | 0.26750 (11) | 0.0162 (4) | |
| C12 | 0.17492 (14) | 0.7085 (4) | 0.18417 (11) | 0.0184 (4) | |
| H12 | 0.2062 | 0.8489 | 0.1731 | 0.022* | |
| C13 | 0.13833 (14) | 0.5797 (4) | 0.11806 (12) | 0.0202 (5) | |
| H13 | 0.1436 | 0.6356 | 0.0612 | 0.024* | |
| C14 | 0.09418 (14) | 0.3717 (4) | 0.13239 (12) | 0.0192 (4) | |
| C15 | 0.08507 (14) | 0.2955 (4) | 0.21663 (12) | 0.0201 (4) | |
| H15 | 0.0547 | 0.1537 | 0.2277 | 0.024* | |
| C16 | 0.11935 (14) | 0.4224 (4) | 0.28417 (12) | 0.0188 (4) | |
| H16 | 0.1119 | 0.3700 | 0.3412 | 0.023* | |
| C17 | 0.05788 (16) | 0.2279 (4) | 0.06012 (13) | 0.0259 (5) | |
| H17A | 0.0939 | 0.0872 | 0.0532 | 0.039* | |
| H17B | 0.0591 | 0.3195 | 0.0073 | 0.039* | |
| H17C | −0.0031 | 0.1830 | 0.0727 | 0.039* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S | 0.0273 (3) | 0.0169 (2) | 0.0112 (2) | −0.0003 (2) | −0.00206 (17) | 0.0006 (2) |
| O1 | 0.0413 (11) | 0.0222 (8) | 0.0180 (7) | 0.0097 (7) | −0.0027 (7) | −0.0032 (6) |
| O2 | 0.0373 (10) | 0.0323 (9) | 0.0166 (7) | −0.0122 (8) | −0.0038 (6) | 0.0014 (6) |
| O3 | 0.0256 (9) | 0.0215 (7) | 0.0111 (6) | 0.0052 (6) | −0.0013 (5) | 0.0010 (5) |
| O4 | 0.0350 (10) | 0.0365 (9) | 0.0117 (6) | 0.0169 (7) | −0.0068 (6) | −0.0064 (6) |
| O5 | 0.0205 (8) | 0.0315 (9) | 0.0207 (7) | 0.0047 (7) | −0.0018 (6) | −0.0069 (6) |
| C1 | 0.0273 (13) | 0.0260 (11) | 0.0154 (9) | 0.0079 (10) | 0.0013 (8) | −0.0016 (8) |
| C2 | 0.0252 (12) | 0.0222 (10) | 0.0157 (9) | 0.0014 (10) | −0.0013 (8) | −0.0029 (8) |
| C3 | 0.0284 (13) | 0.0259 (11) | 0.0185 (10) | 0.0041 (10) | −0.0061 (8) | −0.0038 (8) |
| C4 | 0.0181 (11) | 0.0271 (12) | 0.0141 (9) | 0.0026 (9) | −0.0020 (7) | −0.0006 (8) |
| C5 | 0.0432 (15) | 0.0325 (13) | 0.0209 (10) | 0.0022 (12) | 0.0017 (10) | 0.0071 (10) |
| C6 | 0.0373 (16) | 0.0429 (15) | 0.0310 (12) | −0.0098 (12) | 0.0041 (10) | −0.0151 (11) |
| C11 | 0.0203 (11) | 0.0149 (9) | 0.0132 (8) | 0.0030 (8) | −0.0019 (7) | −0.0002 (7) |
| C12 | 0.0233 (11) | 0.0179 (9) | 0.0141 (8) | −0.0003 (9) | 0.0012 (8) | 0.0030 (8) |
| C13 | 0.0256 (12) | 0.0214 (11) | 0.0135 (9) | 0.0027 (9) | −0.0014 (8) | 0.0016 (8) |
| C14 | 0.0186 (11) | 0.0213 (10) | 0.0178 (9) | 0.0034 (9) | −0.0011 (8) | −0.0040 (8) |
| C15 | 0.0218 (11) | 0.0174 (9) | 0.0211 (9) | −0.0032 (9) | 0.0003 (8) | −0.0003 (9) |
| C16 | 0.0216 (12) | 0.0191 (10) | 0.0156 (9) | 0.0004 (9) | 0.0022 (8) | 0.0020 (8) |
| C17 | 0.0303 (13) | 0.0271 (12) | 0.0203 (10) | −0.0024 (10) | −0.0022 (9) | −0.0069 (9) |
Geometric parameters (Å, °)
| S—O2 | 1.4220 (16) | C15—C16 | 1.382 (3) |
| S—O1 | 1.4253 (16) | C1—H1A | 0.9900 |
| S—O3 | 1.5694 (14) | C1—H1B | 0.9900 |
| S—C11 | 1.7552 (19) | C2—H2 | 1.0000 |
| O3—C1 | 1.467 (2) | C3—H3A | 0.9900 |
| O4—C2 | 1.429 (2) | C3—H3B | 0.9900 |
| O4—C4 | 1.432 (2) | C5—H5A | 0.9800 |
| O5—C4 | 1.418 (2) | C5—H5B | 0.9800 |
| O5—C3 | 1.426 (2) | C5—H5C | 0.9800 |
| C1—C2 | 1.500 (3) | C6—H6A | 0.9800 |
| C2—C3 | 1.532 (3) | C6—H6B | 0.9800 |
| C4—C6 | 1.498 (3) | C6—H6C | 0.9800 |
| C4—C5 | 1.512 (3) | C12—H12 | 0.9500 |
| C11—C16 | 1.384 (3) | C13—H13 | 0.9500 |
| C11—C12 | 1.396 (2) | C15—H15 | 0.9500 |
| C12—C13 | 1.384 (3) | C16—H16 | 0.9500 |
| C13—C14 | 1.386 (3) | C17—H17A | 0.9800 |
| C14—C15 | 1.398 (3) | C17—H17B | 0.9800 |
| C14—C17 | 1.502 (3) | C17—H17C | 0.9800 |
| O2—S—O1 | 118.55 (10) | O4—C2—H2 | 110.4 |
| O2—S—O3 | 110.12 (9) | C1—C2—H2 | 110.4 |
| O1—S—O3 | 103.75 (8) | C3—C2—H2 | 110.4 |
| O2—S—C11 | 109.01 (9) | O5—C3—H3A | 111.1 |
| O1—S—C11 | 110.18 (10) | C2—C3—H3A | 111.1 |
| O3—S—C11 | 104.21 (8) | O5—C3—H3B | 111.1 |
| C1—O3—S | 118.31 (11) | C2—C3—H3B | 111.1 |
| C2—O4—C4 | 108.77 (15) | H3A—C3—H3B | 109.0 |
| C4—O5—C3 | 106.32 (16) | C4—C5—H5A | 109.5 |
| O3—C1—C2 | 106.63 (16) | C4—C5—H5B | 109.5 |
| O4—C2—C1 | 108.62 (17) | H5A—C5—H5B | 109.5 |
| O4—C2—C3 | 104.44 (16) | C4—C5—H5C | 109.5 |
| C1—C2—C3 | 112.42 (17) | H5A—C5—H5C | 109.5 |
| O5—C3—C2 | 103.40 (16) | H5B—C5—H5C | 109.5 |
| O5—C4—O4 | 105.15 (14) | C4—C6—H6A | 109.5 |
| O5—C4—C6 | 108.76 (18) | C4—C6—H6B | 109.5 |
| O4—C4—C6 | 109.08 (19) | H6A—C6—H6B | 109.5 |
| O5—C4—C5 | 111.38 (18) | C4—C6—H6C | 109.5 |
| O4—C4—C5 | 108.81 (19) | H6A—C6—H6C | 109.5 |
| C6—C4—C5 | 113.32 (18) | H6B—C6—H6C | 109.5 |
| C16—C11—C12 | 121.23 (18) | C13—C12—H12 | 120.8 |
| C16—C11—S | 120.43 (14) | C11—C12—H12 | 120.8 |
| C12—C11—S | 118.32 (16) | C12—C13—H13 | 119.1 |
| C13—C12—C11 | 118.33 (19) | C14—C13—H13 | 119.1 |
| C12—C13—C14 | 121.90 (18) | C16—C15—H15 | 119.3 |
| C13—C14—C15 | 118.20 (18) | C14—C15—H15 | 119.3 |
| C13—C14—C17 | 121.64 (18) | C15—C16—H16 | 120.5 |
| C15—C14—C17 | 120.16 (19) | C11—C16—H16 | 120.5 |
| C16—C15—C14 | 121.30 (19) | C14—C17—H17A | 109.5 |
| C15—C16—C11 | 119.02 (18) | C14—C17—H17B | 109.5 |
| O3—C1—H1A | 110.4 | H17A—C17—H17B | 109.5 |
| C2—C1—H1A | 110.4 | C14—C17—H17C | 109.5 |
| O3—C1—H1B | 110.4 | H17A—C17—H17C | 109.5 |
| C2—C1—H1B | 110.4 | H17B—C17—H17C | 109.5 |
| H1A—C1—H1B | 108.6 | ||
| O2—S—O3—C1 | −42.19 (16) | O2—S—C11—C16 | 145.72 (17) |
| O1—S—O3—C1 | −170.05 (14) | O1—S—C11—C16 | −82.58 (19) |
| C11—S—O3—C1 | 74.60 (16) | O3—S—C11—C16 | 28.16 (19) |
| S—O3—C1—C2 | −177.32 (13) | O2—S—C11—C12 | −35.86 (19) |
| C4—O4—C2—C1 | −122.29 (19) | O1—S—C11—C12 | 95.84 (18) |
| C4—O4—C2—C3 | −2.1 (2) | O3—S—C11—C12 | −153.41 (16) |
| O3—C1—C2—O4 | −64.2 (2) | C16—C11—C12—C13 | 0.1 (3) |
| O3—C1—C2—C3 | −179.29 (16) | S—C11—C12—C13 | −178.31 (16) |
| C4—O5—C3—C2 | 32.7 (2) | C11—C12—C13—C14 | −1.5 (3) |
| O4—C2—C3—O5 | −18.5 (2) | C12—C13—C14—C15 | 1.6 (3) |
| C1—C2—C3—O5 | 99.1 (2) | C12—C13—C14—C17 | −177.4 (2) |
| C3—O5—C4—O4 | −34.7 (2) | C13—C14—C15—C16 | −0.3 (3) |
| C3—O5—C4—C6 | −151.42 (19) | C17—C14—C15—C16 | 178.8 (2) |
| C3—O5—C4—C5 | 83.0 (2) | C14—C15—C16—C11 | −1.0 (3) |
| C2—O4—C4—O5 | 22.3 (2) | C12—C11—C16—C15 | 1.1 (3) |
| C2—O4—C4—C6 | 138.77 (18) | S—C11—C16—C15 | 179.51 (16) |
| C2—O4—C4—C5 | −97.16 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C16—H16···O1i | 0.95 | 2.60 | 3.212 (2) | 122 |
| C17—H17C···O1ii | 0.98 | 2.65 | 3.369 (3) | 131 |
| C17—H17B···O1iii | 0.98 | 2.66 | 3.558 (3) | 153 |
| C5—H5A···O2iv | 0.98 | 2.64 | 3.509 (3) | 148 |
Symmetry codes: (i) x, y−1, z; (ii) −x, y−1/2, −z+1/2; (iii) x, −y+3/2, z−1/2; (iv) x, −y+3/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT2935).
References
- Baer, E. & Fischer, H. O. L. (1948). J. Am. Chem. Soc 70, 609–610. [DOI] [PubMed]
- Bruker (1998). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Jones, P. G., Kuś, P. & Celinski, R. (2003). Acta Cryst. E59, o117–o118.
- Kazemi, F., Massah, A. R. & Javaherian, M. (2007). Tetrahedron, 63, 5083–5087.
- Kuś, P., Rojkiewicz, M., Zięba, G., Witoszek, M. & Jones, P. G. (2009). Acta Cryst E65, o1192. [DOI] [PMC free article] [PubMed]
- Ouchi, M., Inoue, Y., Liu, Y., Nagamune, S., Nakamura, S., Wada, K. & Hakushi, K. (1990). Bull. Chem. Soc. Jpn, 63, 1260–1262.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Siemens (1994). XP Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015037/bt2935sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015037/bt2935Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


