Abstract
In the title compound, C9H12NO2 +·ClO4 −, an intramolecular N—H⋯O interaction results in the formation of a six-membered ring having a twisted chair conformation. In the crystal structure, intermolecular O—H⋯O, N—H⋯O and C—H⋯O interactions link the molecules into a network. A weak C—H⋯π interaction is also found.
Related literature
There has been an increased interest in the enantiomeric preparation of β-amino acids as precursors for the synthesis of novel biologically active compounds, see: Arki et al. (2004 ▶); Cohen et al. (2002 ▶); Zeller et al. (1965 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C9H12NO2 +·ClO4 −
M r = 265.65
Orthorhombic,
a = 6.6583 (13) Å
b = 13.826 (3) Å
c = 24.300 (5) Å
V = 2237.0 (8) Å3
Z = 8
Mo Kα radiation
μ = 0.36 mm−1
T = 294 K
0.45 × 0.35 × 0.12 mm
Data collection
Rigaku SCXmini diffractometer
Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.863, T max = 0.957
21012 measured reflections
2560 independent reflections
1966 reflections with I > 2σ(I)
R int = 0.058
Refinement
R[F 2 > 2σ(F 2)] = 0.053
wR(F 2) = 0.110
S = 1.10
2560 reflections
156 parameters
H-atom parameters constrained
Δρmax = 0.27 e Å−3
Δρmin = −0.37 e Å−3
Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809016171/hk2675sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016171/hk2675Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1B⋯O2 | 0.89 | 2.13 | 2.773 (3) | 128 |
| C9—H9⋯O5i | 0.93 | 2.56 | 3.409 (3) | 152 |
| C3—H3⋯O5i | 0.98 | 2.57 | 3.370 (3) | 139 |
| C3—H3⋯O2ii | 0.98 | 2.58 | 3.286 (3) | 129 |
| N1—H1C⋯O3iii | 0.89 | 2.05 | 2.892 (3) | 158 |
| N1—H1B⋯O3iv | 0.89 | 2.28 | 3.046 (3) | 144 |
| N1—H1A⋯O6v | 0.89 | 2.13 | 2.979 (3) | 159 |
| O1—H1⋯O2vi | 0.82 | 2.41 | 3.046 (2) | 135 |
| O1—H1⋯O4vii | 0.82 | 2.35 | 3.048 (3) | 143 |
| C8—H8⋯Cg1viii | 0.93 | 2.79 | 3.688 (3) | 162 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
; (vii)
; (viii)
. Cg1 is the centroid of the C4–C9 ring.
Acknowledgments
This work was supported by the Technical Fund Financing Projects (grant Nos. 9207042464 and 9207041482) from Southeast University to ZRQ.
supplementary crystallographic information
Comment
β-Amino acids are important molecules, due to their pharmacological properties. Recently, there has been an increased interest in the enantiomeric preparations of β-amino acids, as precursors for the synthesis of novel biologically active compounds (Arki et al., 2004; Cohen et al., 2002; Zeller et al., 1965). We report herein the crystal structure of the title compound.
The asymmetric unit of the title compound contains one cation and one anion (Fig.1 ), in which the bond lengths (Allen et al., 1987) and angles are within normal ranges. Ring A (C4-C9) is, of course, planar. Intramolecular N-H···O interaction results in the formation of a six-membered ring B (O2/N1/C1-C3/H1B) having twisted conformation.
In the crystal structure, intermolecular O-H···O, N-H···O and C-H···O interactions (Table 1) link the molecules into a network (Fig. 2), in which they may be effective in the stabilization of the structure. There also exists a weak C—H···π interaction (Table 1).
Experimental
Under nitrogen protection, benzaldehyde (3.18 g, 30 mmol), malonic acid (5.00 g, 48 mmol) and ammonium acetate (6.00 g, 78 mmol) were added into a flask and refluxed for 10 h to yield a colorless precipitate. The crude product was obtained after filtration, then it was dissolved in ethanol/ perchloric acid (1:1), after slowly evaporating over a period of 4 d, colorless prism crystals of the title compound suitable for X-ray analysis were isolated.
Refinement
H atoms were positioned geometrically with O-H = 0.82 Å (for OH), N-H = 0.89 Å (for NH3), C-H = 0.93, 0.98 and 0.97 Å, for aromatic, methine and methylene H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,O,N), where x = 1.5 for OH and NH3 H and x = 1.2 for all other H atoms.
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom-numbering scheme. Hydrogen bond is shown as dashed line.
Fig. 2.
A partial packing diagram of the title compound. Hydrogen bonds are shown as dashed lines.
Crystal data
| C9H12NO2+·ClO4− | F(000) = 1104 |
| Mr = 265.65 | Dx = 1.578 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1979 reflections |
| a = 6.6583 (13) Å | θ = 3.1–27.5° |
| b = 13.826 (3) Å | µ = 0.36 mm−1 |
| c = 24.300 (5) Å | T = 294 K |
| V = 2237.0 (8) Å3 | Prism, colorless |
| Z = 8 | 0.45 × 0.35 × 0.12 mm |
Data collection
| Rigaku SCXmini diffractometer | 2560 independent reflections |
| Radiation source: fine-focus sealed tube | 1966 reflections with I > 2σ(I) |
| graphite | Rint = 0.058 |
| CCD_Profile_fitting scans | θmax = 27.5°, θmin = 3.1° |
| Absorption correction: multi-scan (Blessing, 1995) | h = −8→8 |
| Tmin = 0.863, Tmax = 0.957 | k = −17→17 |
| 21012 measured reflections | l = −31→31 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.110 | H-atom parameters constrained |
| S = 1.10 | w = 1/[σ2(Fo2) + (0.0351P)2 + 1.6729P] where P = (Fo2 + 2Fc2)/3 |
| 2560 reflections | (Δ/σ)max < 0.001 |
| 156 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.37 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.99041 (8) | 0.97917 (4) | 0.32015 (2) | 0.03337 (17) | |
| O1 | 0.9660 (3) | 0.30715 (14) | 0.32107 (7) | 0.0428 (5) | |
| H1 | 1.0262 | 0.3182 | 0.2923 | 0.064* | |
| O2 | 0.7570 (2) | 0.22973 (13) | 0.26501 (6) | 0.0365 (4) | |
| O3 | 1.0688 (3) | 1.07288 (12) | 0.30762 (7) | 0.0439 (5) | |
| O4 | 0.9012 (3) | 0.94103 (16) | 0.27168 (8) | 0.0630 (6) | |
| O5 | 1.1483 (3) | 0.91952 (15) | 0.33824 (10) | 0.0649 (6) | |
| O6 | 0.8413 (3) | 0.98786 (15) | 0.36203 (8) | 0.0584 (6) | |
| N1 | 0.4988 (3) | 0.09957 (16) | 0.31532 (7) | 0.0349 (5) | |
| H1A | 0.5772 | 0.0550 | 0.3307 | 0.052* | |
| H1B | 0.5491 | 0.1165 | 0.2828 | 0.052* | |
| H1C | 0.3759 | 0.0756 | 0.3107 | 0.052* | |
| C1 | 0.8076 (3) | 0.25365 (17) | 0.31064 (9) | 0.0289 (5) | |
| C2 | 0.6999 (3) | 0.22487 (17) | 0.36217 (9) | 0.0306 (5) | |
| H2A | 0.6911 | 0.2806 | 0.3863 | 0.037* | |
| H2B | 0.7778 | 0.1756 | 0.3810 | 0.037* | |
| C3 | 0.4889 (3) | 0.18613 (17) | 0.35177 (9) | 0.0289 (5) | |
| H3 | 0.4139 | 0.2364 | 0.3321 | 0.035* | |
| C4 | 0.3749 (3) | 0.16333 (17) | 0.40392 (9) | 0.0310 (5) | |
| C5 | 0.3897 (4) | 0.0760 (2) | 0.43014 (10) | 0.0464 (7) | |
| H5 | 0.4766 | 0.0289 | 0.4167 | 0.056* | |
| C6 | 0.2752 (5) | 0.0576 (2) | 0.47670 (12) | 0.0565 (8) | |
| H6 | 0.2840 | −0.0023 | 0.4940 | 0.068* | |
| C7 | 0.1499 (4) | 0.1267 (2) | 0.49722 (11) | 0.0537 (8) | |
| H7 | 0.0739 | 0.1143 | 0.5286 | 0.064* | |
| C8 | 0.1367 (4) | 0.2138 (2) | 0.47155 (11) | 0.0493 (7) | |
| H8 | 0.0524 | 0.2613 | 0.4857 | 0.059* | |
| C9 | 0.2472 (4) | 0.2322 (2) | 0.42480 (9) | 0.0390 (6) | |
| H9 | 0.2352 | 0.2916 | 0.4072 | 0.047* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0277 (3) | 0.0306 (3) | 0.0418 (3) | −0.0002 (2) | 0.0000 (2) | 0.0054 (3) |
| O1 | 0.0336 (10) | 0.0582 (12) | 0.0365 (9) | −0.0188 (8) | 0.0033 (8) | −0.0024 (9) |
| O2 | 0.0335 (9) | 0.0489 (10) | 0.0270 (8) | −0.0081 (8) | 0.0018 (7) | −0.0040 (7) |
| O3 | 0.0422 (10) | 0.0332 (10) | 0.0564 (11) | −0.0080 (8) | −0.0014 (9) | 0.0095 (8) |
| O4 | 0.0594 (13) | 0.0684 (14) | 0.0612 (13) | −0.0217 (11) | −0.0103 (11) | −0.0133 (11) |
| O5 | 0.0553 (13) | 0.0554 (13) | 0.0841 (15) | 0.0219 (11) | −0.0044 (12) | 0.0233 (11) |
| O6 | 0.0517 (12) | 0.0644 (13) | 0.0591 (12) | 0.0037 (10) | 0.0210 (10) | 0.0119 (11) |
| N1 | 0.0307 (11) | 0.0439 (12) | 0.0300 (10) | −0.0085 (9) | 0.0019 (9) | −0.0045 (9) |
| C1 | 0.0242 (11) | 0.0291 (12) | 0.0333 (12) | 0.0002 (9) | 0.0011 (9) | −0.0020 (10) |
| C2 | 0.0296 (12) | 0.0359 (13) | 0.0262 (11) | −0.0056 (10) | −0.0013 (9) | −0.0024 (10) |
| C3 | 0.0253 (11) | 0.0355 (13) | 0.0259 (11) | 0.0009 (10) | 0.0013 (9) | −0.0003 (9) |
| C4 | 0.0238 (11) | 0.0435 (14) | 0.0256 (11) | −0.0039 (10) | −0.0005 (9) | 0.0008 (10) |
| C5 | 0.0485 (16) | 0.0501 (16) | 0.0406 (14) | 0.0037 (13) | 0.0071 (13) | 0.0065 (13) |
| C6 | 0.066 (2) | 0.0596 (19) | 0.0435 (16) | −0.0121 (16) | 0.0047 (15) | 0.0180 (14) |
| C7 | 0.0425 (16) | 0.085 (2) | 0.0339 (14) | −0.0167 (16) | 0.0088 (12) | 0.0037 (15) |
| C8 | 0.0388 (15) | 0.073 (2) | 0.0363 (14) | 0.0045 (14) | 0.0094 (12) | −0.0057 (14) |
| C9 | 0.0323 (12) | 0.0520 (16) | 0.0326 (12) | 0.0016 (11) | 0.0003 (11) | 0.0012 (12) |
Geometric parameters (Å, °)
| Cl1—O5 | 1.4067 (19) | C3—N1 | 1.490 (3) |
| Cl1—O4 | 1.421 (2) | C3—C4 | 1.510 (3) |
| Cl1—O6 | 1.4269 (19) | C3—H3 | 0.9800 |
| Cl1—O3 | 1.4297 (18) | C4—C5 | 1.369 (3) |
| O1—H1 | 0.8200 | C4—C9 | 1.373 (3) |
| N1—H1A | 0.8900 | C5—C6 | 1.388 (4) |
| N1—H1B | 0.8900 | C5—H5 | 0.9300 |
| N1—H1C | 0.8900 | C6—C7 | 1.363 (4) |
| C1—O2 | 1.205 (3) | C6—H6 | 0.9300 |
| C1—O1 | 1.313 (3) | C7—C8 | 1.359 (4) |
| C1—C2 | 1.497 (3) | C7—H7 | 0.9300 |
| C2—C3 | 1.524 (3) | C8—C9 | 1.377 (3) |
| C2—H2A | 0.9700 | C8—H8 | 0.9300 |
| C2—H2B | 0.9700 | C9—H9 | 0.9300 |
| O5—Cl1—O4 | 110.73 (15) | N1—C3—C2 | 109.89 (18) |
| O5—Cl1—O6 | 110.28 (13) | C4—C3—C2 | 113.42 (18) |
| O4—Cl1—O6 | 109.36 (13) | N1—C3—H3 | 107.5 |
| O5—Cl1—O3 | 108.97 (12) | C4—C3—H3 | 107.5 |
| O4—Cl1—O3 | 108.21 (12) | C2—C3—H3 | 107.5 |
| O6—Cl1—O3 | 109.25 (12) | C5—C4—C9 | 119.0 (2) |
| C1—O1—H1 | 109.5 | C5—C4—C3 | 122.6 (2) |
| C3—N1—H1A | 109.5 | C9—C4—C3 | 118.5 (2) |
| C3—N1—H1B | 109.5 | C4—C5—C6 | 120.1 (3) |
| C3—N1—H1C | 109.5 | C4—C5—H5 | 120.0 |
| H1A—N1—H1B | 109.5 | C6—C5—H5 | 120.0 |
| H1A—N1—H1C | 109.5 | C7—C6—C5 | 120.4 (3) |
| H1B—N1—H1C | 109.5 | C7—C6—H6 | 119.8 |
| O2—C1—O1 | 123.8 (2) | C5—C6—H6 | 119.8 |
| O2—C1—C2 | 124.2 (2) | C8—C7—C6 | 119.5 (3) |
| O1—C1—C2 | 111.91 (19) | C8—C7—H7 | 120.2 |
| C1—C2—C3 | 113.35 (18) | C6—C7—H7 | 120.2 |
| C1—C2—H2A | 108.9 | C7—C8—C9 | 120.5 (3) |
| C3—C2—H2A | 108.9 | C7—C8—H8 | 119.7 |
| C1—C2—H2B | 108.9 | C9—C8—H8 | 119.7 |
| C3—C2—H2B | 108.9 | C4—C9—C8 | 120.5 (3) |
| H2A—C2—H2B | 107.7 | C4—C9—H9 | 119.7 |
| N1—C3—C4 | 110.68 (19) | C8—C9—H9 | 119.7 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1B···O2 | 0.89 | 2.13 | 2.773 (3) | 128 |
| C9—H9···O5i | 0.93 | 2.56 | 3.409 (3) | 152 |
| C3—H3···O5i | 0.98 | 2.57 | 3.370 (3) | 139 |
| C3—H3···O2ii | 0.98 | 2.58 | 3.286 (3) | 129 |
| N1—H1C···O3iii | 0.89 | 2.05 | 2.892 (3) | 158 |
| N1—H1B···O3iv | 0.89 | 2.28 | 3.046 (3) | 144 |
| N1—H1A···O6v | 0.89 | 2.13 | 2.979 (3) | 159 |
| O1—H1···O2vi | 0.82 | 2.41 | 3.046 (2) | 135 |
| O1—H1···O4vii | 0.82 | 2.35 | 3.048 (3) | 143 |
| C8—H8···Cg1viii | 0.93 | 2.79 | 3.688 (3) | 162 |
Symmetry codes: (i) −x+3/2, y−1/2, z; (ii) x−1/2, y, −z+1/2; (iii) x−1, y−1, z; (iv) x−1/2, y−1, −z+1/2; (v) x, y−1, z; (vi) x+1/2, y, −z+1/2; (vii) −x+2, y−1/2, −z+1/2; (viii) −x−1, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2675).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Arki, A., Tourwe, D., Solymar, M., Fueloep, F., Armstrong, D. W. & Peter, A. (2004). Chromatographia, 60, S43–54.
- Blessing, R. H. (1995). Acta Cryst. A51, 33–38. [DOI] [PubMed]
- Cohen, J. H., Abdel-Magid, A. F., Almond, H. R. Jr & Maryanoff, C. A. (2002). Tetrahedron Lett.43, 1977–1981.
- Rigaku/MSC (2005). CrystalClear Rigaku/MSC, The Woodlands, Texas, USA.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
- Zeller, E. A., Ramachander, G., Fleisher, G. A., Ishimaru, T. & Zeller, V. (1965). Biochem. J.95, 262–269. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809016171/hk2675sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016171/hk2675Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


