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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 May 29;65(Pt 6):m697. doi: 10.1107/S1600536809017206

Tris[2-(2-pyridylimino­meth­yl)phenol­ato(0.67−)]europium(III) nitrate

Qi-Hua Zhao a,*, Hong-Yan Chen a, Li-Nan Li a, Ming-Jin Xie a
PMCID: PMC2969734  PMID: 21583052

Abstract

The title compound, [Eu(C12H9.33N2O)3]NO3, was obtained by the reaction of Eu(NO3)·3H2O and the Schiff base ligand 2-(2-pyridylimino­meth­yl)phenol. The Eu atom is located on a threefold rotation axis and is nine-coordinated by three tridentate Schiff base ligands in a distorted tricapped trigonal-prismatic geometry. The O atom at the phenol hydr­oxy group is partially deprotonated and the H atoms are modelled with one-third occupancy according to the space group R Inline graphic. Offset face-to-face π–π [centroid–centroid distance = 3.886 (3) Å] and edge-to-face C—H⋯π inter­actions are found between adjacent mol­ecules. An intra­molecular O—H⋯N hydrogen bond is also present.

Related literature

For the synthesis, see: Sreenivasulu et al. (2005); Henry et al. (2008). For related structures, see: Li & Zhang (2004); You et al. (2004).graphic file with name e-65-0m697-scheme1.jpg

Experimental

Crystal data

  • [Eu(C12H9.33N2O)3]NO3

  • M r = 806.61

  • Hexagonal, Inline graphic

  • a = 14.0398 (12) Å

  • c = 28.509 (5) Å

  • V = 4866.7 (11) Å3

  • Z = 6

  • Mo Kα radiation

  • μ = 1.99 mm−1

  • T = 293 K

  • 0.21 × 0.15 × 0.10 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.706, T max = 0.819

  • 10540 measured reflections

  • 2599 independent reflections

  • 1711 reflections with I > 2σ(I)

  • R int = 0.092

Refinement

  • R[F 2 > 2σ(F 2)] = 0.054

  • wR(F 2) = 0.128

  • S = 1.00

  • 2599 reflections

  • 155 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 1.11 e Å−3

  • Δρmin = −0.90 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017206/bq2130sup1.cif

e-65-0m697-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017206/bq2130Isup2.hkl

e-65-0m697-Isup2.hkl (128KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected geometric parameters (Å, °).

Eu1—O1 2.334 (4)
Eu1—N2 2.539 (5)
Eu1—N1 2.680 (5)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1B⋯N2 0.89 (14) 2.09 (14) 2.783 (6) 134 (11)
C12—H12ACg1iii 0.93 2.88 3.788 (9) 167

Symmetry code: (iii) Inline graphic. Cg1 is the centroid of the C7–C12 benzene ring.

supplementary crystallographic information

Comment

During the last decades, considerable amount of work was devoted to the synthesis, structure and properties of transition metal complexes derived from Schiff bases because of their potential applications in catalysis and enzymatic reactions, magnetism and molecular architecture (Henry et al. 2008; Li & Zhang, 2004). Herein, we report the Schiff base complex mentioned in the title by solvent evaporation method (Sreenivasulu et al., 2005).

As shown in Fig. 1, the central Eu of the title compound is nine-coordinated. The coordination environment is defined by six N atoms and three O atoms from the three different N-Salicylidene-2-aminopyride ligands. (You et al., 2004). The bond length of Eu(1)—N(1) (2.681 (5) Å) and Eu(1)—N(2) (2.540 (5) Å) are longer than Eu(1)—O(1) (2.332 (4) Å). The bond angle of O(1)#1-Eu(1)—N(2)#2 (69.37 (14)°) is larger than N(2)#2-Eu(1)—N(1) (51.11 (15)°).

In one schiff base ligand, all of the atoms are almost in one plane. The most evident distortion is associated with the C12 atom, which is 0.2017 (3)Å away from the mean plane. Meanwhile, the two aromatic rings of the same ligand form a dihedral angle of 14.072 (4)°, and between every two neighbour ligands coordinated to the Eu, the schiff bases appear an angle of 80.768 (3), 80.292 (4), 80.933 (3)°, respectively. The phenyl ring and pyridine ring of adjacent molecules exist the offset face-to-face pi-pi stacking interactions, with a distance of 3.886 (3)Å (13.245 (4)°) and the edge-to-face C—H-pi interactions were founded between the two phenyl rings of adjacent molecules with the distance of 3.785 (5) Å. The intramolecular hydrogen-bonding was also found between O1 and N2 atoms with the N···O separation of 2.783 (6) Å.

Experimental

All chemicals used (reagent grade) were commercially available. Salicylaldehyde (0.122 g, 1 mmol) and 2-aminomethylpyridine (0.108 g, 1 mmol) were dissolved in ethanol (5 ml) respectively at room temperature. Then the two solutions were mixed and stirred slowly for about 30 min. Finally, the yellow ligand was synthesized. Then Eu(NO3)2.3H2O (0.400 g, 1 mmol) in ethanol (5 ml) was added to it with stirring homogeneously. Yellow crystals suitable for X-ray ananlysis were obtained by slow evaporation at room temperature over several days.

Refinement

H atoms bonded to C atoms were calculated geometrically and allowed to ride on the C atoms with distance restraints of C—H = 0.93Å and Uiso(H) = 1.2Ueq(C). The H atom bonded to atom O1 was located in a difference map and refined with the distance restraints O—H = 0.89 (14)Å and the H atoms was modelled with one-third occupancy.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

[Eu(C12H9.33N2O)3]NO3 F(000) = 2424
Mr = 806.61 Dx = 1.651 Mg m3
Hexagonal, R3 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3 θ = 1.9–28.4°
a = 14.0398 (12) Å µ = 1.99 mm1
c = 28.509 (5) Å T = 293 K
V = 4866.7 (11) Å3 Block, yellow
Z = 6 0.21 × 0.15 × 0.10 mm

Data collection

Bruker APEXII 1K CCD area-detector diffractometer 2599 independent reflections
Radiation source: fine-focus sealed tube 1711 reflections with I > 2σ(I)
graphite Rint = 0.092
φ and ω scans θmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −13→18
Tmin = 0.706, Tmax = 0.819 k = −18→18
10540 measured reflections l = −37→35

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128 H atoms treated by a mixture of independent and constrained refinement
S = 1.00 w = 1/[σ2(Fo2) + (0.059P)2] where P = (Fo2 + 2Fc2)/3
2599 reflections (Δ/σ)max < 0.001
155 parameters Δρmax = 1.11 e Å3
0 restraints Δρmin = −0.90 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Eu1 1.0000 0.0000 0.16281 (2) 0.0373 (2)
O1 1.0522 (4) 0.1495 (3) 0.21296 (15) 0.0466 (11)
H1B 1.108 (11) 0.139 (10) 0.206 (4) 0.05 (3)* 0.33
O2 0.977 (3) 0.068 (2) 0.3090 (13) 0.558 (19)
N1 1.1365 (4) 0.0071 (4) 0.09543 (18) 0.0450 (12)
N2 1.1941 (4) 0.1521 (4) 0.14418 (17) 0.0404 (12)
N3 1.0000 0.0000 0.3159 (6) 0.142 (7)
C1 1.1473 (6) −0.0492 (6) 0.0603 (2) 0.062 (2)
H1A 1.0877 −0.1170 0.0520 0.075*
C2 1.2458 (7) −0.0091 (7) 0.0357 (3) 0.068 (2)
H2A 1.2515 −0.0495 0.0111 0.081*
C3 1.3364 (6) 0.0926 (6) 0.0483 (2) 0.0623 (19)
H3A 1.4029 0.1202 0.0324 0.075*
C4 1.3251 (5) 0.1502 (5) 0.0842 (2) 0.0505 (16)
H4A 1.3841 0.2173 0.0936 0.061*
C5 1.2233 (5) 0.1064 (5) 0.1066 (2) 0.0453 (15)
C6 1.2517 (5) 0.2543 (5) 0.1551 (2) 0.0460 (16)
H6A 1.3151 0.2975 0.1377 0.055*
C7 1.2259 (5) 0.3067 (5) 0.1920 (2) 0.0404 (14)
C8 1.1301 (5) 0.2504 (5) 0.2202 (2) 0.0398 (14)
C9 1.1213 (5) 0.3104 (6) 0.2584 (2) 0.0536 (17)
H9A 1.0619 0.2753 0.2787 0.064*
C10 1.1979 (6) 0.4187 (6) 0.2661 (3) 0.070 (2)
H10A 1.1888 0.4552 0.2914 0.084*
C11 1.2886 (6) 0.4749 (6) 0.2370 (3) 0.070 (2)
H11A 1.3391 0.5488 0.2420 0.084*
C12 1.3017 (5) 0.4186 (5) 0.2009 (3) 0.0581 (18)
H12A 1.3626 0.4553 0.1814 0.070*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Eu1 0.0340 (2) 0.0340 (2) 0.0438 (3) 0.01701 (11) 0.000 0.000
O1 0.041 (2) 0.040 (2) 0.055 (3) 0.018 (2) 0.008 (2) −0.001 (2)
O2 0.46 (3) 0.34 (3) 1.02 (6) 0.30 (2) −0.05 (5) 0.03 (4)
N1 0.040 (3) 0.047 (3) 0.045 (3) 0.019 (3) 0.005 (2) −0.006 (2)
N2 0.033 (3) 0.036 (3) 0.050 (3) 0.016 (2) 0.002 (2) −0.006 (2)
N3 0.180 (12) 0.180 (12) 0.065 (9) 0.090 (6) 0.000 0.000
C1 0.066 (5) 0.054 (4) 0.060 (5) 0.024 (4) 0.004 (4) −0.018 (4)
C2 0.086 (6) 0.087 (6) 0.048 (4) 0.055 (5) 0.000 (4) −0.014 (4)
C3 0.061 (5) 0.069 (5) 0.063 (5) 0.036 (4) 0.008 (4) −0.001 (4)
C4 0.047 (4) 0.053 (4) 0.056 (4) 0.029 (3) 0.000 (3) 0.001 (3)
C5 0.041 (4) 0.049 (4) 0.052 (4) 0.027 (3) 0.001 (3) 0.000 (3)
C6 0.034 (3) 0.035 (3) 0.062 (4) 0.012 (3) 0.001 (3) 0.000 (3)
C7 0.040 (3) 0.033 (3) 0.047 (4) 0.018 (3) −0.002 (3) −0.003 (3)
C8 0.038 (3) 0.039 (3) 0.046 (4) 0.022 (3) −0.003 (3) 0.000 (3)
C9 0.049 (4) 0.060 (4) 0.053 (4) 0.028 (4) −0.001 (3) −0.018 (3)
C10 0.060 (5) 0.061 (5) 0.086 (6) 0.029 (4) −0.009 (4) −0.035 (4)
C11 0.057 (5) 0.042 (4) 0.098 (6) 0.016 (4) −0.004 (4) −0.021 (4)
C12 0.043 (4) 0.042 (4) 0.078 (5) 0.013 (3) −0.004 (4) −0.011 (4)

Geometric parameters (Å, °)

Eu1—O1 2.334 (4) C1—C2 1.395 (10)
Eu1—O1i 2.334 (4) C1—H1A 0.9300
Eu1—O1ii 2.334 (4) C2—C3 1.403 (10)
Eu1—N2i 2.539 (5) C2—H2A 0.9300
Eu1—N2ii 2.539 (5) C3—C4 1.361 (9)
Eu1—N2 2.539 (5) C3—H3A 0.9300
Eu1—N1ii 2.680 (5) C4—C5 1.397 (9)
Eu1—N1i 2.680 (5) C4—H4A 0.9300
Eu1—N1 2.680 (5) C6—C7 1.430 (8)
Eu1—C5ii 3.154 (6) C6—H6A 0.9300
Eu1—C5i 3.154 (6) C7—C12 1.412 (8)
Eu1—C5 3.154 (6) C7—C8 1.420 (8)
O1—C8 1.302 (7) C8—C9 1.418 (8)
O1—H1B 0.89 (14) C9—C10 1.372 (9)
O2—N3 1.167 (16) C9—H9A 0.9300
N1—C1 1.330 (8) C10—C11 1.389 (10)
N1—C5 1.353 (8) C10—H10A 0.9300
N2—C6 1.285 (7) C11—C12 1.365 (9)
N2—C5 1.411 (7) C11—H11A 0.9300
N3—O2i 1.167 (16) C12—H12A 0.9300
N3—O2ii 1.167 (16)
O1—Eu1—O1i 86.41 (15) O1i—Eu1—H1B 101 (4)
O1—Eu1—O1ii 86.41 (15) O1ii—Eu1—H1B 71 (3)
O1i—Eu1—O1ii 86.41 (15) N2i—Eu1—H1B 102 (4)
O1—Eu1—N2i 80.87 (15) N2ii—Eu1—H1B 140 (3)
O1i—Eu1—N2i 69.51 (15) N2—Eu1—H1B 52 (4)
O1ii—Eu1—N2i 153.28 (16) N1ii—Eu1—H1B 167 (3)
O1—Eu1—N2ii 153.28 (16) N1i—Eu1—H1B 92 (3)
O1i—Eu1—N2ii 80.87 (15) N1—Eu1—H1B 102 (4)
O1ii—Eu1—N2ii 69.51 (15) C5ii—Eu1—H1B 166 (4)
N2i—Eu1—N2ii 115.74 (7) C5i—Eu1—H1B 97 (3)
O1—Eu1—N2 69.51 (15) C5—Eu1—H1B 77 (4)
O1i—Eu1—N2 153.28 (16) C8—O1—Eu1 142.2 (4)
O1ii—Eu1—N2 80.87 (15) C8—O1—H1B 83 (8)
N2i—Eu1—N2 115.74 (8) Eu1—O1—H1B 68 (8)
N2ii—Eu1—N2 115.74 (7) C1—N1—C5 118.6 (6)
O1—Eu1—N1ii 151.37 (16) C1—N1—Eu1 144.0 (4)
O1i—Eu1—N1ii 86.02 (16) C5—N1—Eu1 97.4 (4)
O1ii—Eu1—N1ii 120.57 (15) C6—N2—C5 121.9 (5)
N2i—Eu1—N1ii 70.61 (15) C6—N2—Eu1 134.4 (4)
N2ii—Eu1—N1ii 51.09 (15) C5—N2—Eu1 102.1 (3)
N2—Eu1—N1ii 120.68 (15) O2i—N3—O2 117.2 (12)
O1—Eu1—N1i 86.02 (16) O2i—N3—O2ii 117.2 (12)
O1i—Eu1—N1i 120.57 (15) O2—N3—O2ii 117.2 (12)
O1ii—Eu1—N1i 151.37 (16) N1—C1—C2 121.5 (7)
N2i—Eu1—N1i 51.09 (15) N1—C1—H1A 119.2
N2ii—Eu1—N1i 120.68 (15) C2—C1—H1A 119.2
N2—Eu1—N1i 70.61 (15) C1—C2—C3 119.6 (6)
N1ii—Eu1—N1i 74.31 (17) C1—C2—H2A 120.2
O1—Eu1—N1 120.57 (15) C3—C2—H2A 120.2
O1i—Eu1—N1 151.37 (16) C4—C3—C2 118.8 (7)
O1ii—Eu1—N1 86.02 (16) C4—C3—H3A 120.6
N2i—Eu1—N1 120.68 (15) C2—C3—H3A 120.6
N2ii—Eu1—N1 70.61 (15) C3—C4—C5 118.7 (6)
N2—Eu1—N1 51.09 (15) C3—C4—H4A 120.7
N1ii—Eu1—N1 74.31 (17) C5—C4—H4A 120.7
N1i—Eu1—N1 74.31 (17) N1—C5—C4 122.8 (6)
O1—Eu1—C5ii 168.10 (15) N1—C5—N2 109.3 (5)
O1i—Eu1—C5ii 81.98 (16) C4—C5—N2 127.9 (6)
O1ii—Eu1—C5ii 95.44 (15) N1—C5—Eu1 57.4 (3)
N2i—Eu1—C5ii 92.55 (15) C4—C5—Eu1 175.7 (5)
N2ii—Eu1—C5ii 25.94 (15) N2—C5—Eu1 51.9 (3)
N2—Eu1—C5ii 122.40 (15) N2—C6—C7 125.0 (6)
N1ii—Eu1—C5ii 25.18 (15) N2—C6—H6A 117.5
N1i—Eu1—C5ii 97.61 (16) C7—C6—H6A 117.5
N1—Eu1—C5ii 71.32 (15) C12—C7—C8 119.7 (6)
O1—Eu1—C5i 81.98 (16) C12—C7—C6 117.4 (6)
O1i—Eu1—C5i 95.44 (16) C8—C7—C6 122.9 (5)
O1ii—Eu1—C5i 168.10 (15) O1—C8—C9 119.5 (6)
N2i—Eu1—C5i 25.94 (15) O1—C8—C7 124.2 (5)
N2ii—Eu1—C5i 122.40 (15) C9—C8—C7 116.3 (5)
N2—Eu1—C5i 92.55 (15) O1—C8—H1B 36 (5)
N1ii—Eu1—C5i 71.32 (15) C9—C8—H1B 143 (5)
N1i—Eu1—C5i 25.18 (15) C7—C8—H1B 94 (5)
N1—Eu1—C5i 97.61 (16) C10—C9—C8 121.9 (7)
C5ii—Eu1—C5i 96.46 (15) C10—C9—H9A 119.0
O1—Eu1—C5 95.44 (16) C8—C9—H9A 119.0
O1i—Eu1—C5 168.10 (15) C9—C10—C11 121.4 (7)
O1ii—Eu1—C5 81.98 (16) C9—C10—H10A 119.3
N2i—Eu1—C5 122.40 (15) C11—C10—H10A 119.3
N2ii—Eu1—C5 92.55 (15) C12—C11—C10 118.2 (6)
N2—Eu1—C5 25.94 (15) C12—C11—H11A 120.9
N1ii—Eu1—C5 97.61 (16) C10—C11—H11A 120.9
N1i—Eu1—C5 71.32 (15) C11—C12—C7 122.3 (7)
N1—Eu1—C5 25.18 (15) C11—C12—H12A 118.8
C5ii—Eu1—C5 96.46 (15) C7—C12—H12A 118.8
C5i—Eu1—C5 96.46 (15)

Symmetry codes: (i) −y+1, xy−1, z; (ii) −x+y+2, −x+1, z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1B···N2 0.89 (14) 2.09 (14) 2.783 (6) 134 (11)
C12—H12A···Cg1iii 0.93 2.88 3.788 (9) 167

Symmetry codes: (iii) xy+2/3, x−2/3, −z+1/3.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2130).

References

  1. Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Henry, N., Lagrenée, M. & Abraham, F. (2008). Inorg. Chem. Commun.11, 1071–1074.
  3. Li, Z.-X. & Zhang, X.-L. (2004). Acta Cryst. E60, m1017–m1019.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany..
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Sreenivasulu, B., Vetrichelvan, M., Zhao, F., Gao, S. & Vittal, J. J. (2005). Eur. J. Inorg. Chem. pp. 4635–4645.
  7. You, Z.-L., Chen, B., Zhu, H.-L. & Liu, W.-S. (2004). Acta Cryst. E60, m884–m886.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017206/bq2130sup1.cif

e-65-0m697-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017206/bq2130Isup2.hkl

e-65-0m697-Isup2.hkl (128KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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