Abstract
In the title compound, C10H16O6, the five-membered ring has an envelope conformation. The packing involves hydrogen-bonded carboxylic acid inversion dimers and three C—H⋯O interactions.
Related literature
For related literature, see: Osanai et al. (1997 ▶); Scriba (1993 ▶, 1995 ▶). The structure of a related derivative is reported in the preceeding paper, see: Kuś et al. (2009 ▶).
Experimental
Crystal data
C10H16O6
M r = 232.23
Monoclinic,
a = 20.7650 (12) Å
b = 5.7007 (3) Å
c = 9.6964 (7) Å
β = 98.658 (5)°
V = 1134.73 (12) Å3
Z = 4
Cu Kα radiation
μ = 0.96 mm−1
T = 100 K
0.2 × 0.1 × 0.1 mm
Data collection
Oxford Diffraction Xcalibur diffractometer with an Atlas (Nova) detector
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.880, T max = 1.000 (expected range = 0.799–0.908)
10581 measured reflections
2304 independent reflections
2170 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.125
S = 1.14
2304 reflections
156 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.27 e Å−3
Δρmin = −0.25 e Å−3
Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1994 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015190/bt2936sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015190/bt2936Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H01⋯O2i | 0.80 (3) | 1.86 (3) | 2.6582 (19) | 175 (3) |
| C3—H3A⋯O3ii | 0.99 | 2.36 | 3.211 (2) | 144 |
| C2—H2B⋯O4iii | 0.99 | 2.57 | 3.489 (2) | 155 |
| C7—H7B⋯O5iv | 0.99 | 2.60 | 3.506 (3) | 152 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
Financial support by the Polish State Committee for Scientific Research (grant No. R0504303) is gratefully acknowledged.
supplementary crystallographic information
Comment
Isopropylidene groups are often used as protecting or activating units in polyhydroxyalkyl compounds used for synthesis of sugar-like derivatives; for a brief introduction and the structure of a related derivative, see the accompanying paper (Kuś et al., 2009).
Hemi-esters of succinic acid are often used for the synthesis of amphiphilic compounds with well organized structure (Osanai et al., 1997). Non-symmetrical esters of succinic acid have been used for the synthesis of prodrugs that release the corresponding drugs very slowly; e.g. steroid drugs (Scriba, 1995) or Phenytoin (Scriba, 1993). Solketal (D,L-isopropylideneglycerol, Aldrich) was used for the synthesis of compound 1.
The molecule of compound 1 is shown in Fig. 1. Bond lengths and angles may be regarded as normal. The chain C2 through to C7 has an approximately extended conformation (absolute torsion angles between 158 and 174°). The five-membered ring displays an envelope conformation, with local mirror symmetry about C8 and the midpoint of C6—C7.
The molecular packing (Fig. 2) is dominated by the formation of the well known carboxylic acid dimers via classical hydrogen bonding. Three further contacts, of the type C—H···O, link the molecules to a three-dimensional pattern.
Experimental
Compound 1 was obtained from solketal and succinic anhydride as described by Scriba (1993). Slow crystallization from petroleum ether gave crystals suitable for X-ray analysis. The analytical and spectroscopic data are consistent with the literature. M.p. 60° C. 1H NMR (CDCl3, 400 MHz): δ 4.32 (q, 1H), 4.21–4.05 (m, 3H), 3.75–3.72 (dd, 1H), 2.67 (t, 4H), 1.43 (s, 3H), 1.36 (s, 3H). 13C NMR (100 MHz): δ 207.34, 172.10, 110.03, 73.62, 66.39, 65.13, 31.03, 28.97, 26.78, 25.46. MS (ESI): m/z (%) = 231 (100) [M—H]-. IR: C═O at 1724, 1711 and 1694 cm-1 (s), C—O at 1234 cm-1 (m), 1,3-dioxalone at 975 cm-1 (s).
Refinement
The OH hydrogen was refined freely. Methyl H atoms were identified in difference syntheses and refined as idealized rigid groups (C—H 0.98 Å, H—C—H 109.5°) allowed to rotate but not tip. Other H atoms were included at calculated positions and refined using a riding model, with fixed C—H bond lengths of 0.95 Å (CH, aromatic), 0.99 Å (CH2) and 1.00 Å (CH, sp3); Uiso(H) values were fixed at 1.2Ueq of the parent C atom (1.2Ueq for methyl H).
The atom C6 is disordered over two sites with occupancy ratio 0.9:0.1, corresponding to a second conformation of the five-membered ring. An appropriate set of similarity restraints was used to ensure stability of refinement.
Figures
Fig. 1.
The title compound in the crystal structure. Displacement ellipsoids represent 50% probability levels.
Fig. 2.
Packing diagram of the title compound. H atoms not involved in H bonding (thick dashed lines) are omitted for clarity. The interaction H7B···O5, which links the five-membered rings parallel to the c axis (the view direction), is not shown.
Crystal data
| C10H16O6 | Dx = 1.359 Mg m−3 |
| Mr = 232.23 | Melting point: 333 K |
| Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
| a = 20.7650 (12) Å | Cell parameters from 7029 reflections |
| b = 5.7007 (3) Å | θ = 4.3–75.7° |
| c = 9.6964 (7) Å | µ = 0.96 mm−1 |
| β = 98.658 (5)° | T = 100 K |
| V = 1134.73 (12) Å3 | Block, colourless |
| Z = 4 | 0.2 × 0.1 × 0.1 mm |
| F(000) = 496 |
Data collection
| Oxford Diffraction Xcalibur diffractometer with an Atlas (Nova) detector | 2304 independent reflections |
| Radiation source: Nova (Cu) X-ray Source | 2170 reflections with I > 2σ(I) |
| mirror | Rint = 0.028 |
| Detector resolution: 10.3543 pixels mm-1 | θmax = 74.5°, θmin = 4.3° |
| ω scans | h = −25→25 |
| Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008) | k = −7→6 |
| Tmin = 0.880, Tmax = 1.000 | l = −10→12 |
| 10581 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.14 | w = 1/[σ2(Fo2) + (0.0399P)2 + 1.0966P] where P = (Fo2 + 2Fc2)/3 |
| 2304 reflections | (Δ/σ)max = 0.015 |
| 156 parameters | Δρmax = 0.27 e Å−3 |
| 4 restraints | Δρmin = −0.25 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| O1 | 0.44071 (7) | −0.1502 (2) | 0.58989 (15) | 0.0287 (3) | |
| H01 | 0.4643 (14) | −0.164 (5) | 0.533 (3) | 0.047 (8)* | |
| O2 | 0.47778 (6) | 0.2189 (2) | 0.59298 (14) | 0.0278 (3) | |
| C1 | 0.44377 (9) | 0.0675 (3) | 0.63543 (19) | 0.0243 (4) | |
| C2 | 0.40364 (9) | 0.1107 (3) | 0.7496 (2) | 0.0265 (4) | |
| H2A | 0.4299 | 0.0701 | 0.8403 | 0.032* | |
| H2B | 0.3653 | 0.0055 | 0.7356 | 0.032* | |
| C3 | 0.38031 (9) | 0.3632 (3) | 0.75537 (19) | 0.0258 (4) | |
| H3A | 0.3599 | 0.3849 | 0.8405 | 0.031* | |
| H3B | 0.4183 | 0.4697 | 0.7620 | 0.031* | |
| C4 | 0.33223 (9) | 0.4289 (3) | 0.6303 (2) | 0.0258 (4) | |
| O3 | 0.32078 (7) | 0.3156 (3) | 0.52376 (14) | 0.0340 (4) | |
| O4 | 0.30257 (6) | 0.6315 (2) | 0.65113 (14) | 0.0295 (3) | |
| C5 | 0.26115 (10) | 0.7325 (4) | 0.5323 (2) | 0.0339 (5) | |
| H5A | 0.2372 | 0.6073 | 0.4752 | 0.041* | 0.893 (8) |
| H5B | 0.2877 | 0.8205 | 0.4731 | 0.041* | 0.893 (8) |
| H5C | 0.2798 | 0.8886 | 0.5170 | 0.041* | 0.107 (8) |
| H5D | 0.2675 | 0.6354 | 0.4508 | 0.041* | 0.107 (8) |
| O5 | 0.16891 (7) | 0.7592 (3) | 0.65090 (18) | 0.0426 (4) | |
| O6 | 0.10733 (7) | 0.9607 (3) | 0.48082 (18) | 0.0453 (4) | |
| C6 | 0.21452 (11) | 0.8932 (4) | 0.5879 (3) | 0.0318 (7) | 0.893 (8) |
| H6 | 0.2385 | 1.0041 | 0.6573 | 0.038* | 0.893 (8) |
| C7 | 0.17233 (11) | 1.0302 (5) | 0.4709 (3) | 0.0459 (6) | |
| H7A | 0.1779 | 1.2014 | 0.4852 | 0.055* | 0.893 (8) |
| H7B | 0.1839 | 0.9886 | 0.3786 | 0.055* | 0.893 (8) |
| H7C | 0.1896 | 1.1553 | 0.5371 | 0.055* | 0.107 (8) |
| H7D | 0.1801 | 1.0664 | 0.3749 | 0.055* | 0.107 (8) |
| C6' | 0.1934 (9) | 0.766 (4) | 0.523 (2) | 0.069 (10)* | 0.107 (8) |
| H6' | 0.1699 | 0.6485 | 0.4572 | 0.083* | 0.107 (8) |
| C8 | 0.10751 (10) | 0.8735 (4) | 0.6185 (2) | 0.0388 (5) | |
| C9 | 0.10142 (14) | 1.0693 (5) | 0.7197 (3) | 0.0568 (7) | |
| H9A | 0.1050 | 1.0054 | 0.8144 | 0.085* | |
| H9B | 0.0590 | 1.1461 | 0.6952 | 0.085* | |
| H9C | 0.1362 | 1.1841 | 0.7156 | 0.085* | |
| C10 | 0.05421 (12) | 0.6939 (5) | 0.6160 (3) | 0.0532 (7) | |
| H10A | 0.0609 | 0.5680 | 0.5508 | 0.080* | |
| H10B | 0.0119 | 0.7686 | 0.5861 | 0.080* | |
| H10C | 0.0552 | 0.6282 | 0.7097 | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0314 (7) | 0.0253 (7) | 0.0316 (7) | −0.0017 (6) | 0.0123 (6) | −0.0010 (6) |
| O2 | 0.0279 (7) | 0.0250 (7) | 0.0322 (7) | −0.0018 (5) | 0.0100 (5) | −0.0003 (6) |
| C1 | 0.0223 (8) | 0.0241 (9) | 0.0256 (9) | 0.0016 (7) | 0.0007 (7) | 0.0022 (7) |
| C2 | 0.0272 (9) | 0.0277 (10) | 0.0254 (9) | −0.0004 (7) | 0.0062 (7) | 0.0022 (8) |
| C3 | 0.0266 (9) | 0.0265 (10) | 0.0247 (9) | 0.0005 (7) | 0.0055 (7) | −0.0011 (7) |
| C4 | 0.0233 (9) | 0.0273 (10) | 0.0285 (9) | −0.0009 (7) | 0.0097 (7) | 0.0007 (8) |
| O3 | 0.0374 (8) | 0.0391 (8) | 0.0256 (7) | 0.0069 (6) | 0.0048 (6) | −0.0039 (6) |
| O4 | 0.0263 (7) | 0.0284 (7) | 0.0337 (7) | 0.0036 (6) | 0.0043 (5) | 0.0010 (6) |
| C5 | 0.0313 (10) | 0.0355 (11) | 0.0351 (11) | 0.0064 (9) | 0.0060 (8) | 0.0049 (9) |
| O5 | 0.0274 (7) | 0.0484 (10) | 0.0538 (10) | 0.0046 (7) | 0.0119 (7) | 0.0075 (8) |
| O6 | 0.0294 (8) | 0.0545 (11) | 0.0509 (10) | 0.0047 (7) | 0.0020 (7) | 0.0003 (8) |
| C6 | 0.0259 (12) | 0.0271 (12) | 0.0427 (14) | −0.0002 (9) | 0.0058 (9) | −0.0001 (10) |
| C7 | 0.0337 (11) | 0.0421 (13) | 0.0610 (16) | 0.0041 (10) | 0.0038 (10) | 0.0111 (12) |
| C8 | 0.0279 (10) | 0.0437 (13) | 0.0449 (12) | 0.0028 (9) | 0.0057 (9) | −0.0062 (10) |
| C9 | 0.0505 (15) | 0.0572 (17) | 0.0653 (17) | 0.0003 (13) | 0.0173 (13) | −0.0208 (14) |
| C10 | 0.0335 (12) | 0.0614 (17) | 0.0661 (17) | −0.0081 (12) | 0.0118 (11) | −0.0125 (14) |
Geometric parameters (Å, °)
| O1—C1 | 1.316 (2) | C2—H2A | 0.9900 |
| O2—C1 | 1.225 (2) | C2—H2B | 0.9900 |
| C1—C2 | 1.502 (3) | C3—H3A | 0.9900 |
| C2—C3 | 1.523 (3) | C3—H3B | 0.9900 |
| C3—C4 | 1.498 (3) | C5—H5A | 0.9900 |
| C4—O3 | 1.211 (2) | C5—H5B | 0.9900 |
| C4—O4 | 1.338 (2) | C5—H5C | 0.9900 |
| O4—C5 | 1.449 (2) | C5—H5D | 0.9900 |
| C5—C6' | 1.408 (16) | C6—H6 | 1.0000 |
| C5—C6 | 1.492 (3) | C7—H7A | 0.9900 |
| O5—C6' | 1.409 (17) | C7—H7B | 0.9900 |
| O5—C8 | 1.424 (3) | C7—H7C | 0.9900 |
| O5—C6 | 1.424 (3) | C7—H7D | 0.9900 |
| O6—C7 | 1.424 (3) | C6'—H6' | 1.0000 |
| O6—C8 | 1.424 (3) | C9—H9A | 0.9800 |
| C6—C7 | 1.537 (3) | C9—H9B | 0.9800 |
| C7—C6' | 1.629 (17) | C9—H9C | 0.9800 |
| C8—C9 | 1.505 (3) | C10—H10A | 0.9800 |
| C8—C10 | 1.505 (3) | C10—H10B | 0.9800 |
| O1—H01 | 0.80 (3) | C10—H10C | 0.9800 |
| O2—C1—O1 | 123.58 (17) | C6'—C5—H5B | 122.2 |
| O2—C1—C2 | 122.95 (17) | O4—C5—H5B | 110.3 |
| O1—C1—C2 | 113.42 (16) | C6—C5—H5B | 110.3 |
| C1—C2—C3 | 113.37 (16) | H5A—C5—H5B | 108.5 |
| C4—C3—C2 | 112.54 (16) | C6'—C5—H5C | 106.1 |
| O3—C4—O4 | 123.59 (18) | O4—C5—H5C | 106.1 |
| O3—C4—C3 | 125.36 (18) | H5A—C5—H5C | 137.6 |
| O4—C4—C3 | 111.05 (16) | C6'—C5—H5D | 106.1 |
| C4—O4—C5 | 117.01 (16) | O4—C5—H5D | 106.1 |
| C6'—C5—O4 | 124.8 (7) | H5C—C5—H5D | 106.3 |
| O4—C5—C6 | 107.25 (17) | O5—C6—H6 | 110.3 |
| C6'—O5—C8 | 102.9 (7) | C5—C6—H6 | 110.3 |
| C8—O5—C6 | 106.90 (17) | C7—C6—H6 | 110.3 |
| C7—O6—C8 | 106.95 (17) | O6—C7—H7A | 110.9 |
| O5—C6—C5 | 109.58 (19) | C6—C7—H7A | 110.9 |
| O5—C6—C7 | 104.30 (18) | O6—C7—H7B | 110.9 |
| C5—C6—C7 | 112.0 (2) | C6—C7—H7B | 110.9 |
| O6—C7—C6 | 104.48 (19) | H7A—C7—H7B | 108.9 |
| O6—C7—C6' | 86.3 (7) | O6—C7—H7C | 114.3 |
| C5—C6'—O5 | 115.5 (14) | C6—C7—H7C | 77.1 |
| C5—C6'—C7 | 111.3 (13) | C6'—C7—H7C | 114.3 |
| O5—C6'—C7 | 100.5 (11) | O6—C7—H7D | 114.3 |
| O6—C8—O5 | 104.06 (17) | C6—C7—H7D | 130.1 |
| O6—C8—C9 | 111.3 (2) | C6'—C7—H7D | 114.3 |
| O5—C8—C9 | 110.8 (2) | H7C—C7—H7D | 111.4 |
| O6—C8—C10 | 109.0 (2) | C5—C6'—H6' | 109.7 |
| O5—C8—C10 | 108.9 (2) | O5—C6'—H6' | 109.7 |
| C9—C8—C10 | 112.4 (2) | C7—C6'—H6' | 109.7 |
| C1—O1—H01 | 109 (2) | C8—C9—H9A | 109.5 |
| C1—C2—H2A | 108.9 | C8—C9—H9B | 109.5 |
| C3—C2—H2A | 108.9 | H9A—C9—H9B | 109.5 |
| C1—C2—H2B | 108.9 | C8—C9—H9C | 109.5 |
| C3—C2—H2B | 108.9 | H9A—C9—H9C | 109.5 |
| H2A—C2—H2B | 107.7 | H9B—C9—H9C | 109.5 |
| C4—C3—H3A | 109.1 | C8—C10—H10A | 109.5 |
| C2—C3—H3A | 109.1 | C8—C10—H10B | 109.5 |
| C4—C3—H3B | 109.1 | H10A—C10—H10B | 109.5 |
| C2—C3—H3B | 109.1 | C8—C10—H10C | 109.5 |
| H3A—C3—H3B | 107.8 | H10A—C10—H10C | 109.5 |
| O4—C5—H5A | 110.3 | H10B—C10—H10C | 109.5 |
| C6—C5—H5A | 110.3 | ||
| O2—C1—C2—C3 | 30.0 (3) | C5—C6—C7—C6' | 55.6 (9) |
| O1—C1—C2—C3 | −152.49 (16) | O4—C5—C6'—O5 | 18 (2) |
| C1—C2—C3—C4 | 67.0 (2) | C6—C5—C6'—O5 | −57.7 (14) |
| C2—C3—C4—O3 | −12.7 (3) | O4—C5—C6'—C7 | 131.5 (8) |
| C2—C3—C4—O4 | 167.00 (15) | C6—C5—C6'—C7 | 56.1 (12) |
| O3—C4—O4—C5 | −8.3 (3) | C8—O5—C6'—C5 | 160.9 (13) |
| C3—C4—O4—C5 | 172.00 (16) | C6—O5—C6'—C5 | 59.9 (15) |
| C4—O4—C5—C6' | 116.4 (12) | C8—O5—C6'—C7 | 41.0 (13) |
| C4—O4—C5—C6 | 157.92 (17) | C6—O5—C6'—C7 | −60.0 (10) |
| C6'—O5—C6—C5 | −51.5 (9) | O6—C7—C6'—C5 | 179.6 (14) |
| C8—O5—C6—C5 | −142.17 (19) | C6—C7—C6'—C5 | −60.5 (13) |
| C6'—O5—C6—C7 | 68.5 (9) | O6—C7—C6'—O5 | −57.5 (11) |
| C8—O5—C6—C7 | −22.1 (2) | C6—C7—C6'—O5 | 62.4 (11) |
| C6'—C5—C6—O5 | 53.2 (10) | C7—O6—C8—O5 | −35.5 (2) |
| O4—C5—C6—O5 | −70.5 (2) | C7—O6—C8—C9 | 83.9 (2) |
| C6'—C5—C6—C7 | −62.0 (10) | C7—O6—C8—C10 | −151.6 (2) |
| O4—C5—C6—C7 | 174.27 (18) | C6'—O5—C8—O6 | −7.5 (11) |
| C8—O6—C7—C6 | 21.4 (3) | C6—O5—C8—O6 | 35.9 (2) |
| C8—O6—C7—C6' | 54.2 (8) | C6'—O5—C8—C9 | −127.2 (11) |
| O5—C6—C7—O6 | 0.5 (3) | C6—O5—C8—C9 | −83.9 (2) |
| C5—C6—C7—O6 | 118.9 (2) | C6'—O5—C8—C10 | 108.6 (11) |
| O5—C6—C7—C6' | −62.8 (9) | C6—O5—C8—C10 | 152.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H01···O2i | 0.80 (3) | 1.86 (3) | 2.6582 (19) | 175 (3) |
| C3—H3A···O3ii | 0.99 | 2.36 | 3.211 (2) | 144 |
| C2—H2B···O4iii | 0.99 | 2.57 | 3.489 (2) | 155 |
| C7—H7B···O5iv | 0.99 | 2.60 | 3.506 (3) | 152 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, −y+1/2, z+1/2; (iii) x, y−1, z; (iv) x, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT2936).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015190/bt2936sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015190/bt2936Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


