Abstract
In the title compound, C15H15N5O4S, the dihedral angle between the pyrimidine and benzene rings is 84.56 (2)°. Intramolecular hydrazine–carbonyl N—H⋯O and intermolecular sulfonamide–pyridimine N—H⋯N hydrogen bonds stabilize the molecular and crystal structures, respectively.
Related literature
For background to sulfa drugs and their derivatives, see: Abbate et al. (2004 ▶); Badr (2008 ▶); Gale et al. (2007 ▶); Hanafy et al. (2007 ▶); Novinson et al. (1976 ▶); Supuran et al. (2003 ▶). For the synthesis of the title compound, see: Goyal & Bhargava (1989 ▶).
Experimental
Crystal data
C15H15N5O4S
M r = 361.38
Monoclinic,
a = 11.354 (3) Å
b = 5.7875 (13) Å
c = 25.974 (6) Å
β = 101.877 (4)°
V = 1670.3 (7) Å3
Z = 4
Mo Kα radiation
μ = 0.23 mm−1
T = 293 K
0.24 × 0.22 × 0.20 mm
Data collection
Bruker SMART APEX diffractometer
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2005 ▶) T min = 0.947, T max = 0.957
17935 measured reflections
3999 independent reflections
3164 reflections with I > 2σ(I)
R int = 0.027
Refinement
R[F 2 > 2σ(F 2)] = 0.047
wR(F 2) = 0.135
S = 1.07
3999 reflections
228 parameters
H-atom parameters constrained
Δρmax = 0.43 e Å−3
Δρmin = −0.27 e Å−3
Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018765/tk2450sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018765/tk2450Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2A⋯O3 | 0.86 | 2.01 | 2.654 (2) | 131 |
| C15—H15⋯O4i | 0.93 | 2.46 | 3.262 (3) | 144 |
Symmetry code: (i)
.
Acknowledgments
KKU and SU are grateful to the UGC, New Delhi, for financial support.
supplementary crystallographic information
Comment
Sulfa drugs and their derivatives have attracted much attention due to their wide spectrum of applications as compounds with anti-bacterial (Badr, 2008), anti-fungal (Hanafy et al., 2007), anti-viral (Supuran et al., 2003), anti-malarial (Gale et al., 2007), and anti-cancer (Abbate et al., 2004) activities. Although the title compound (I) been reported in the literature (Goyal & Bhargava, 1989), its crystal structure was not reported. The molecule of (I), Fig. 1, is-non planar as seen in arrangement of the two aromatic moieties attached to sulfonamide, –NHSO2-, group; the C1—S1—N1—C12 torsion angle is 68.66 (15)°. Within the molecule, there is a prominent intramolecular interaction between the hydrazo-N—H and the carbonyl-O3 atoms, Fig. 2 and Table 1. Intermolecular hydrogen bonds formed between centrosymmetrically related molecules involving the sulfonamide-N—H and the pyrimidine-N4 atoms lead to dimeric aggregates, Fig. 2 and Table 1.
Experimental
Compound (I) was synthesized using the literature procedure (Novinson et al., 1976) as follows. Sulfadiazine (2 mmol, 501 mg) and sodium nitrite (~4 mmol, 300 mg) were dissolved separately in conc. HCl (2 ml) and distilled water (10 ml), respectively, followed by their cooling on crushed ice. The cooled sodium nitrite solution was added to the sulfdiazine solution with constant stirring while maintaining ice-cold temperature. The resulting yellow solution was added to a mixture of acetyl acetone (2 mmol, 0.2 ml) and sodium acetate (~37 mmol, 3 g) in distilled water (15 ml) with continuous stirring. The stirring was continued for 2 h maintaining the temperature of the reaction vessel between 293–298 K. The resulting solids were filtered, washed with water, ethanol and finally, by diethyl ether. The crude product was recrystallized from a water–ethanol mixture (50% v/v) and dried in vacuo. Crystals of (I) were developed by layering its supersaturated solution in ethanol with diethylether and leaving for a few days.
Yield 78%. Spectroscopic anaylysis: 1H NMR (DMSO-d6, TMS, δ p.p.m.) 13.51 (1H, NH) 11.79 (1H, NH), 8.51–7.04 (7H, Ar—H), 2.54–2.42 (6H, CH3). 13C NMR (DMSO-d6, TMS, δ p.p.m.) 197.41, 196.40 (>C═O), 158.3, 156.8, 145.44 (>C═C<), 135.4, 135.3, 129.35, 115.73 (ArC), 31.18, 26.24 (CH3).
Refinement
All H atoms were placed in the idealized positions with C—H = 0.93–0.96 Å and N—H = 0.86 Å, and with Uiso(H) = 1.2—1.5 Ueq(C, N).
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labeling scheme. Displacement ellipsoids are drawn at the 50% probability level.
Fig. 2.
View of (I) showing intermolecular and intramolecular hydrogen bonding, as thin lines.
Crystal data
| C15H15N5O4S | F(000) = 752 |
| Mr = 361.38 | Dx = 1.437 Mg m−3 |
| Monoclinic, P21/n | Melting point: 508 K |
| Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
| a = 11.354 (3) Å | Cell parameters from 489 reflections |
| b = 5.7875 (13) Å | θ = 2.5–27.5° |
| c = 25.974 (6) Å | µ = 0.23 mm−1 |
| β = 101.877 (4)° | T = 293 K |
| V = 1670.3 (7) Å3 | Block, colourless |
| Z = 4 | 0.24 × 0.22 × 0.20 mm |
Data collection
| Bruker SMART APEX diffractometer | 3999 independent reflections |
| Radiation source: fine-focus sealed tube | 3164 reflections with I > 2σ(I) |
| graphite | Rint = 0.027 |
| Detector resolution: 0.3 pixels mm-1 | θmax = 28.2°, θmin = 1.6° |
| ω scans | h = −14→14 |
| Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2005) | k = −7→7 |
| Tmin = 0.947, Tmax = 0.957 | l = −33→34 |
| 17935 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full with fixed elements per cycle | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.135 | H-atom parameters constrained |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0735P)2 + 0.3686P] where P = (Fo2 + 2Fc2)/3 |
| 3999 reflections | (Δ/σ)max < 0.001 |
| 228 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.63840 (13) | 0.4007 (3) | 0.17280 (6) | 0.0382 (3) | |
| C2 | 0.65017 (14) | 0.2375 (3) | 0.21231 (6) | 0.0423 (4) | |
| H2 | 0.6861 | 0.0958 | 0.2085 | 0.051* | |
| C3 | 0.60841 (14) | 0.2856 (3) | 0.25745 (6) | 0.0442 (4) | |
| H3 | 0.6172 | 0.1775 | 0.2845 | 0.053* | |
| C4 | 0.55332 (13) | 0.4960 (3) | 0.26228 (6) | 0.0403 (3) | |
| C5 | 0.54124 (15) | 0.6595 (3) | 0.22244 (7) | 0.0441 (4) | |
| H5 | 0.5036 | 0.7998 | 0.2258 | 0.053* | |
| C6 | 0.58527 (14) | 0.6128 (3) | 0.17784 (6) | 0.0435 (4) | |
| H6 | 0.5793 | 0.7229 | 0.1513 | 0.052* | |
| C7 | 0.41088 (16) | 0.7698 (3) | 0.35557 (7) | 0.0508 (4) | |
| C8 | 0.32001 (18) | 0.9556 (4) | 0.35144 (8) | 0.0640 (5) | |
| C9 | 0.2914 (2) | 1.0962 (4) | 0.30216 (10) | 0.0776 (6) | |
| H9A | 0.2278 | 1.0230 | 0.2775 | 0.116* | |
| H9B | 0.3617 | 1.1078 | 0.2871 | 0.116* | |
| H9C | 0.2663 | 1.2480 | 0.3102 | 0.116* | |
| C10 | 0.46123 (17) | 0.6545 (4) | 0.40679 (7) | 0.0588 (5) | |
| C11 | 0.4767 (3) | 0.7965 (5) | 0.45552 (9) | 0.0890 (8) | |
| H11A | 0.5122 | 0.7037 | 0.4853 | 0.134* | |
| H11B | 0.3996 | 0.8519 | 0.4599 | 0.134* | |
| H11C | 0.5282 | 0.9255 | 0.4528 | 0.134* | |
| C12 | 0.48295 (14) | 0.2255 (3) | 0.05575 (6) | 0.0410 (3) | |
| C13 | 0.31325 (16) | 0.1234 (3) | −0.00211 (7) | 0.0558 (5) | |
| H13 | 0.2584 | 0.1438 | −0.0337 | 0.067* | |
| C14 | 0.29513 (18) | −0.0519 (4) | 0.03058 (9) | 0.0672 (5) | |
| H14 | 0.2297 | −0.1513 | 0.0218 | 0.081* | |
| C15 | 0.37720 (18) | −0.0752 (4) | 0.07679 (9) | 0.0645 (5) | |
| H15 | 0.3662 | −0.1929 | 0.0997 | 0.077* | |
| N1 | 0.58083 (12) | 0.3715 (2) | 0.06677 (5) | 0.0448 (3) | |
| H1 | 0.5816 | 0.4870 | 0.0460 | 0.054* | |
| N2 | 0.51240 (12) | 0.5382 (3) | 0.30859 (5) | 0.0473 (3) | |
| H2A | 0.5336 | 0.4483 | 0.3353 | 0.057* | |
| N3 | 0.44158 (12) | 0.7152 (3) | 0.31136 (5) | 0.0474 (3) | |
| N4 | 0.40737 (12) | 0.2669 (2) | 0.00980 (5) | 0.0447 (3) | |
| N5 | 0.47232 (14) | 0.0633 (3) | 0.09050 (6) | 0.0543 (4) | |
| O1 | 0.77449 (10) | 0.5273 (3) | 0.10851 (5) | 0.0599 (3) | |
| O2 | 0.74016 (12) | 0.1133 (2) | 0.11958 (5) | 0.0593 (3) | |
| O3 | 0.49670 (15) | 0.4579 (3) | 0.40757 (6) | 0.0857 (5) | |
| O4 | 0.26722 (17) | 0.9867 (4) | 0.38702 (7) | 0.1059 (6) | |
| S1 | 0.69587 (3) | 0.34360 (8) | 0.116167 (15) | 0.04382 (10) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0377 (7) | 0.0417 (8) | 0.0330 (7) | 0.0005 (6) | 0.0023 (6) | −0.0020 (6) |
| C2 | 0.0458 (8) | 0.0380 (8) | 0.0418 (8) | 0.0078 (6) | 0.0060 (7) | −0.0003 (6) |
| C3 | 0.0475 (8) | 0.0447 (8) | 0.0393 (8) | 0.0065 (7) | 0.0064 (7) | 0.0082 (6) |
| C4 | 0.0375 (7) | 0.0457 (8) | 0.0361 (7) | −0.0001 (6) | 0.0037 (6) | −0.0044 (6) |
| C5 | 0.0471 (8) | 0.0370 (8) | 0.0473 (9) | 0.0071 (7) | 0.0076 (7) | −0.0012 (7) |
| C6 | 0.0494 (8) | 0.0409 (8) | 0.0381 (8) | 0.0041 (7) | 0.0043 (7) | 0.0051 (6) |
| C7 | 0.0483 (8) | 0.0587 (10) | 0.0456 (9) | 0.0016 (8) | 0.0098 (7) | −0.0085 (8) |
| C8 | 0.0610 (11) | 0.0676 (12) | 0.0638 (12) | 0.0124 (10) | 0.0139 (9) | −0.0124 (10) |
| C9 | 0.0716 (13) | 0.0735 (14) | 0.0858 (16) | 0.0217 (11) | 0.0114 (12) | 0.0035 (12) |
| C10 | 0.0551 (10) | 0.0769 (13) | 0.0471 (10) | 0.0054 (9) | 0.0167 (8) | −0.0013 (9) |
| C11 | 0.0990 (17) | 0.118 (2) | 0.0458 (11) | 0.0011 (16) | 0.0061 (11) | −0.0156 (12) |
| C12 | 0.0447 (8) | 0.0441 (8) | 0.0336 (7) | −0.0011 (7) | 0.0066 (6) | −0.0013 (6) |
| C13 | 0.0510 (9) | 0.0650 (11) | 0.0470 (9) | −0.0096 (9) | −0.0002 (7) | −0.0036 (8) |
| C14 | 0.0586 (11) | 0.0666 (12) | 0.0724 (13) | −0.0220 (10) | 0.0041 (9) | 0.0041 (10) |
| C15 | 0.0647 (11) | 0.0609 (11) | 0.0665 (12) | −0.0138 (10) | 0.0104 (10) | 0.0163 (10) |
| N1 | 0.0479 (7) | 0.0494 (8) | 0.0336 (6) | −0.0079 (6) | −0.0002 (5) | 0.0049 (6) |
| N2 | 0.0508 (7) | 0.0542 (8) | 0.0367 (7) | 0.0081 (6) | 0.0085 (6) | 0.0001 (6) |
| N3 | 0.0422 (7) | 0.0553 (8) | 0.0431 (7) | 0.0034 (6) | 0.0052 (6) | −0.0083 (6) |
| N4 | 0.0469 (7) | 0.0509 (8) | 0.0343 (6) | −0.0053 (6) | 0.0038 (5) | −0.0001 (6) |
| N5 | 0.0582 (8) | 0.0566 (9) | 0.0457 (8) | −0.0083 (7) | 0.0054 (6) | 0.0123 (7) |
| O1 | 0.0471 (6) | 0.0832 (9) | 0.0491 (7) | −0.0162 (6) | 0.0089 (5) | −0.0029 (6) |
| O2 | 0.0637 (7) | 0.0686 (8) | 0.0433 (6) | 0.0224 (7) | 0.0057 (5) | −0.0072 (6) |
| O3 | 0.1122 (12) | 0.0941 (11) | 0.0564 (8) | 0.0341 (10) | 0.0303 (8) | 0.0152 (8) |
| O4 | 0.1151 (12) | 0.1252 (15) | 0.0895 (12) | 0.0543 (12) | 0.0496 (10) | −0.0011 (11) |
| S1 | 0.04035 (19) | 0.0554 (2) | 0.03392 (18) | 0.00152 (17) | 0.00343 (15) | −0.00326 (16) |
Geometric parameters (Å, °)
| C1—C2 | 1.380 (2) | C10—C11 | 1.489 (3) |
| C1—C6 | 1.386 (2) | C11—H11A | 0.9600 |
| C1—S1 | 1.7590 (15) | C11—H11B | 0.9600 |
| C2—C3 | 1.381 (2) | C11—H11C | 0.9600 |
| C2—H2 | 0.9300 | C12—N5 | 1.325 (2) |
| C3—C4 | 1.386 (2) | C12—N4 | 1.340 (2) |
| C3—H3 | 0.9300 | C12—N1 | 1.378 (2) |
| C4—C5 | 1.388 (2) | C13—N4 | 1.339 (2) |
| C4—N2 | 1.397 (2) | C13—C14 | 1.366 (3) |
| C5—C6 | 1.380 (2) | C13—H13 | 0.9300 |
| C5—H5 | 0.9300 | C14—C15 | 1.366 (3) |
| C6—H6 | 0.9300 | C14—H14 | 0.9300 |
| C7—N3 | 1.306 (2) | C15—N5 | 1.333 (2) |
| C7—C8 | 1.478 (3) | C15—H15 | 0.9300 |
| C7—C10 | 1.493 (3) | N1—S1 | 1.6396 (13) |
| C8—O4 | 1.214 (2) | N1—H1 | 0.8600 |
| C8—C9 | 1.495 (3) | N2—N3 | 1.3136 (19) |
| C9—H9A | 0.9600 | N2—H2A | 0.8600 |
| C9—H9B | 0.9600 | O1—S1 | 1.4284 (13) |
| C9—H9C | 0.9600 | O2—S1 | 1.4210 (13) |
| C10—O3 | 1.206 (2) | ||
| C2—C1—C6 | 120.88 (14) | C10—C11—H11A | 109.5 |
| C2—C1—S1 | 119.82 (12) | C10—C11—H11B | 109.5 |
| C6—C1—S1 | 119.27 (12) | H11A—C11—H11B | 109.5 |
| C1—C2—C3 | 119.71 (15) | C10—C11—H11C | 109.5 |
| C1—C2—H2 | 120.1 | H11A—C11—H11C | 109.5 |
| C3—C2—H2 | 120.1 | H11B—C11—H11C | 109.5 |
| C2—C3—C4 | 119.62 (15) | N5—C12—N4 | 127.00 (15) |
| C2—C3—H3 | 120.2 | N5—C12—N1 | 118.39 (14) |
| C4—C3—H3 | 120.2 | N4—C12—N1 | 114.61 (14) |
| C3—C4—C5 | 120.56 (15) | N4—C13—C14 | 122.19 (17) |
| C3—C4—N2 | 117.87 (14) | N4—C13—H13 | 118.9 |
| C5—C4—N2 | 121.56 (14) | C14—C13—H13 | 118.9 |
| C6—C5—C4 | 119.70 (15) | C13—C14—C15 | 117.17 (18) |
| C6—C5—H5 | 120.2 | C13—C14—H14 | 121.4 |
| C4—C5—H5 | 120.2 | C15—C14—H14 | 121.4 |
| C5—C6—C1 | 119.51 (15) | N5—C15—C14 | 122.95 (18) |
| C5—C6—H6 | 120.2 | N5—C15—H15 | 118.5 |
| C1—C6—H6 | 120.2 | C14—C15—H15 | 118.5 |
| N3—C7—C8 | 114.89 (17) | C12—N1—S1 | 125.49 (11) |
| N3—C7—C10 | 123.56 (16) | C12—N1—H1 | 117.3 |
| C8—C7—C10 | 121.55 (16) | S1—N1—H1 | 117.3 |
| O4—C8—C7 | 119.93 (18) | N3—N2—C4 | 119.95 (14) |
| O4—C8—C9 | 121.11 (18) | N3—N2—H2A | 120.0 |
| C7—C8—C9 | 118.91 (18) | C4—N2—H2A | 120.0 |
| C8—C9—H9A | 109.5 | C7—N3—N2 | 120.95 (15) |
| C8—C9—H9B | 109.5 | C13—N4—C12 | 115.42 (15) |
| H9A—C9—H9B | 109.5 | C12—N5—C15 | 115.25 (16) |
| C8—C9—H9C | 109.5 | O2—S1—O1 | 118.93 (9) |
| H9A—C9—H9C | 109.5 | O2—S1—N1 | 110.86 (6) |
| H9B—C9—H9C | 109.5 | O1—S1—N1 | 103.75 (6) |
| O3—C10—C11 | 121.73 (19) | O2—S1—C1 | 108.15 (6) |
| O3—C10—C7 | 120.14 (16) | O1—S1—C1 | 109.07 (6) |
| C11—C10—C7 | 117.9 (2) | N1—S1—C1 | 105.24 (7) |
| C6—C1—C2—C3 | 0.1 (2) | N4—C12—N1—S1 | −172.23 (12) |
| S1—C1—C2—C3 | 177.95 (12) | C3—C4—N2—N3 | −168.07 (14) |
| C1—C2—C3—C4 | 1.0 (2) | C5—C4—N2—N3 | 12.8 (2) |
| C2—C3—C4—C5 | −0.8 (2) | C8—C7—N3—N2 | −173.28 (15) |
| C2—C3—C4—N2 | −179.93 (14) | C10—C7—N3—N2 | 6.1 (3) |
| C3—C4—C5—C6 | −0.5 (2) | C4—N2—N3—C7 | −173.92 (15) |
| N2—C4—C5—C6 | 178.57 (14) | C14—C13—N4—C12 | 0.5 (3) |
| C4—C5—C6—C1 | 1.6 (2) | N5—C12—N4—C13 | −1.8 (3) |
| C2—C1—C6—C5 | −1.4 (2) | N1—C12—N4—C13 | 178.52 (15) |
| S1—C1—C6—C5 | −179.29 (12) | N4—C12—N5—C15 | 1.9 (3) |
| N3—C7—C8—O4 | 164.74 (17) | N1—C12—N5—C15 | −178.47 (16) |
| C10—C7—C8—O4 | −14.6 (3) | C14—C15—N5—C12 | −0.6 (3) |
| N3—C7—C8—C9 | −12.8 (3) | C12—N1—S1—O2 | 48.04 (14) |
| C10—C7—C8—C9 | 167.8 (2) | C12—N1—S1—O1 | 176.80 (12) |
| N3—C7—C10—O3 | −27.4 (3) | C12—N1—S1—C1 | −68.66 (15) |
| C8—C7—C10—O3 | 151.92 (17) | C2—C1—S1—O2 | 4.63 (13) |
| N3—C7—C10—C11 | 146.9 (2) | C6—C1—S1—O2 | −177.48 (11) |
| C8—C7—C10—C11 | −33.8 (3) | C2—C1—S1—O1 | −126.05 (12) |
| N4—C13—C14—C15 | 0.5 (3) | C6—C1—S1—O1 | 51.84 (13) |
| C13—C14—C15—N5 | −0.4 (3) | C2—C1—S1—N1 | 123.16 (13) |
| N5—C12—N1—S1 | 8.0 (2) | C6—C1—S1—N1 | −58.95 (13) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2A···O3 | 0.86 | 2.01 | 2.654 (2) | 131 |
| C15—H15···O4i | 0.93 | 2.46 | 3.262 (3) | 144 |
Symmetry codes: (i) −x+1/2, y−3/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2450).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018765/tk2450sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018765/tk2450Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


