Abstract
In the cation of the title compound, C6H6N5 +·ClO4 −, the pyridinium and tetrazole rings form a dihedral angle of 23.6 (1)°. In the crystal structure, weak intermolecular N—H⋯O and N—H⋯N hydrogen bonds link cations and anions into chains extending along the b axis.
Related literature
For applications of tetrazole derivatives in coordination chemistry, see: Xiong et al. (2002 ▶); Wang et al. (2005 ▶). For related structures, see: Dai & Fu (2008 ▶); Wen (2008 ▶).
Experimental
Crystal data
C6H6N5 +·ClO4 −
M r = 247.61
Monoclinic,
a = 5.2033 (10) Å
b = 14.764 (3) Å
c = 12.244 (2) Å
β = 101.78 (3)°
V = 920.8 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.43 mm−1
T = 298 K
0.30 × 0.25 × 0.20 mm
Data collection
Rigaku Mercury2 diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.872, T max = 1.000 (expected range = 0.801–0.919)
9546 measured reflections
2108 independent reflections
1849 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.035
wR(F 2) = 0.093
S = 1.09
2108 reflections
146 parameters
H-atom parameters constrained
Δρmax = 0.29 e Å−3
Δρmin = −0.37 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018200/cv2545sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018200/cv2545Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N5—H5A⋯O3i | 0.86 | 2.28 | 2.964 (2) | 136 |
| N5—H5A⋯N2ii | 0.86 | 2.38 | 3.059 (2) | 136 |
| N3—H3A⋯O4iii | 0.86 | 2.21 | 2.884 (2) | 135 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.
supplementary crystallographic information
Comment
In the past few years, more and more people have focused their attention on the chemistry of tetrazole derivatives because of their multiple coordination modes as ligands to metal ions and for the construction of novel metal-organic frameworks (Wang et al. 2005; Xiong et al. 2002; Wen, 2008). We report here the crystal structure of the title compound, 4-(2H-tetrazol-5-yl)pyridinium perchlorate).
In the title compound (Fig.1), the pyridine N atom is protonated. The pyridine ring makes a dihedral angle of 23.62 (1)° with the tetrazole ring. The geometric parameters of the tetrazole rings are comparable to those in related molecules (Wang et al. 2005; Dai & Fu, 2008).
The crystal packing is stabilized by N—H···O and N—H···N hydrogen bonds (Table 1) with the formation of zig-zag chains parallel to b axis.
Experimental
Isonicotinonitrile (30 mmol), NaN 3 (45 mmol), NH4Cl (33 mmol) and DMF (50 ml) were added in a flask under nitrogen atmosphere and the mixture stirred at 110°C for 20 h. The resulting solution was then poured into ice-water (100 ml), and a white solid was obtained after adding HCl (6 M) till pH=6. The precipitate was filtered and washed with distilled water. Colourless block-shaped crystals suitable for X-ray analysis were obtained from the crude product by slow evaporation of an ethanol/HClO4 (50:1 v/v) solution.
Refinement
All H atoms attached to C and N atoms were fixed geometrically and treated as riding with C–H = 0.93 Å (aromatic) and N–H = 0.86 Å with Uiso(H) =1.2Ueq(C or N).
Figures
Fig. 1.
A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level.
Crystal data
| C6H6N5+·ClO4− | F(000) = 504 |
| Mr = 247.61 | Dx = 1.786 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2108 reflections |
| a = 5.2033 (10) Å | θ = 3.2–27.5° |
| b = 14.764 (3) Å | µ = 0.43 mm−1 |
| c = 12.244 (2) Å | T = 298 K |
| β = 101.78 (3)° | Block, colourless |
| V = 920.8 (3) Å3 | 0.30 × 0.25 × 0.20 mm |
| Z = 4 |
Data collection
| Rigaku Mercury2 diffractometer | 2108 independent reflections |
| Radiation source: fine-focus sealed tube | 1849 reflections with I > 2σ(I) |
| graphite | Rint = 0.036 |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
| CCD profile fitting scans | h = −6→6 |
| Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −19→19 |
| Tmin = 0.872, Tmax = 1.000 | l = −15→15 |
| 9546 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.035 | H-atom parameters constrained |
| wR(F2) = 0.093 | w = 1/[σ2(Fo2) + (0.0391P)2 + 0.4636P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.09 | (Δ/σ)max < 0.001 |
| 2108 reflections | Δρmax = 0.29 e Å−3 |
| 146 parameters | Δρmin = −0.37 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.032 (3) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.54774 (8) | 0.68556 (3) | 0.60933 (3) | 0.02861 (15) | |
| O4 | 0.6154 (3) | 0.76134 (10) | 0.54624 (12) | 0.0425 (4) | |
| O3 | 0.2704 (3) | 0.68626 (10) | 0.60633 (13) | 0.0433 (4) | |
| O2 | 0.6150 (3) | 0.60331 (10) | 0.55912 (15) | 0.0524 (4) | |
| N1 | 0.3679 (3) | 0.59831 (10) | 0.88383 (13) | 0.0307 (3) | |
| N5 | 0.0708 (3) | 0.33991 (11) | 0.61681 (12) | 0.0317 (3) | |
| H5A | −0.0101 | 0.3029 | 0.5673 | 0.038* | |
| N4 | 0.7318 (3) | 0.51759 (10) | 0.89177 (13) | 0.0325 (4) | |
| C3 | 0.3301 (3) | 0.45759 (11) | 0.77061 (13) | 0.0247 (3) | |
| C6 | 0.4761 (3) | 0.52315 (11) | 0.85006 (13) | 0.0246 (3) | |
| N2 | 0.5614 (3) | 0.64262 (10) | 0.94760 (13) | 0.0327 (4) | |
| C5 | 0.2877 (4) | 0.31159 (12) | 0.68590 (16) | 0.0337 (4) | |
| H5 | 0.3471 | 0.2526 | 0.6810 | 0.040* | |
| N3 | 0.7722 (3) | 0.59329 (10) | 0.95023 (13) | 0.0325 (4) | |
| H3A | 0.9246 | 0.6090 | 0.9871 | 0.039* | |
| O1 | 0.6915 (3) | 0.69193 (12) | 0.72169 (12) | 0.0516 (4) | |
| C2 | 0.0996 (3) | 0.48426 (12) | 0.69840 (15) | 0.0298 (4) | |
| H2 | 0.0327 | 0.5423 | 0.7026 | 0.036* | |
| C4 | 0.4234 (4) | 0.37000 (12) | 0.76447 (15) | 0.0308 (4) | |
| H4 | 0.5756 | 0.3511 | 0.8129 | 0.037* | |
| C1 | −0.0268 (4) | 0.42336 (13) | 0.62097 (15) | 0.0334 (4) | |
| H1 | −0.1799 | 0.4401 | 0.5716 | 0.040* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0264 (2) | 0.0283 (2) | 0.0283 (2) | −0.00122 (15) | −0.00104 (16) | 0.00377 (16) |
| O4 | 0.0439 (8) | 0.0389 (8) | 0.0435 (8) | −0.0015 (6) | 0.0060 (6) | 0.0151 (6) |
| O3 | 0.0268 (7) | 0.0536 (9) | 0.0482 (8) | −0.0018 (6) | 0.0044 (6) | −0.0002 (7) |
| O2 | 0.0510 (9) | 0.0366 (8) | 0.0687 (11) | 0.0080 (7) | 0.0098 (8) | −0.0074 (7) |
| N1 | 0.0302 (8) | 0.0249 (8) | 0.0349 (8) | −0.0011 (6) | 0.0013 (6) | −0.0052 (6) |
| N5 | 0.0349 (8) | 0.0290 (8) | 0.0287 (8) | −0.0066 (6) | 0.0006 (6) | −0.0077 (6) |
| N4 | 0.0284 (8) | 0.0285 (8) | 0.0371 (8) | 0.0002 (6) | −0.0016 (6) | −0.0049 (6) |
| C3 | 0.0260 (8) | 0.0227 (8) | 0.0247 (8) | −0.0023 (6) | 0.0036 (6) | −0.0002 (6) |
| C6 | 0.0262 (8) | 0.0215 (8) | 0.0244 (8) | 0.0000 (6) | 0.0012 (6) | 0.0007 (6) |
| N2 | 0.0346 (8) | 0.0266 (8) | 0.0344 (8) | −0.0041 (6) | 0.0014 (6) | −0.0049 (6) |
| C5 | 0.0423 (11) | 0.0224 (9) | 0.0348 (10) | 0.0007 (7) | 0.0037 (8) | −0.0026 (7) |
| N3 | 0.0289 (8) | 0.0293 (8) | 0.0348 (8) | −0.0038 (6) | −0.0038 (6) | −0.0047 (6) |
| O1 | 0.0471 (9) | 0.0699 (11) | 0.0306 (8) | −0.0147 (7) | −0.0092 (6) | 0.0103 (7) |
| C2 | 0.0291 (9) | 0.0249 (9) | 0.0328 (9) | 0.0015 (7) | 0.0003 (7) | −0.0014 (7) |
| C4 | 0.0331 (9) | 0.0247 (9) | 0.0304 (9) | 0.0024 (7) | −0.0030 (7) | −0.0009 (7) |
| C1 | 0.0294 (9) | 0.0345 (10) | 0.0325 (9) | −0.0008 (7) | −0.0027 (7) | −0.0011 (8) |
Geometric parameters (Å, °)
| Cl1—O1 | 1.4285 (15) | C3—C4 | 1.389 (2) |
| Cl1—O2 | 1.4363 (15) | C3—C2 | 1.394 (2) |
| Cl1—O3 | 1.4363 (15) | C3—C6 | 1.469 (2) |
| Cl1—O4 | 1.4433 (14) | N2—N3 | 1.312 (2) |
| N1—N2 | 1.315 (2) | C5—C4 | 1.375 (2) |
| N1—C6 | 1.347 (2) | C5—H5 | 0.9300 |
| N5—C5 | 1.332 (2) | N3—H3A | 0.8600 |
| N5—C1 | 1.338 (2) | C2—C1 | 1.373 (2) |
| N5—H5A | 0.8600 | C2—H2 | 0.9300 |
| N4—N3 | 1.321 (2) | C4—H4 | 0.9300 |
| N4—C6 | 1.327 (2) | C1—H1 | 0.9300 |
| O1—Cl1—O2 | 110.02 (11) | N3—N2—N1 | 105.86 (15) |
| O1—Cl1—O3 | 110.48 (10) | N5—C5—C4 | 119.66 (17) |
| O2—Cl1—O3 | 109.06 (9) | N5—C5—H5 | 120.2 |
| O1—Cl1—O4 | 109.12 (9) | C4—C5—H5 | 120.2 |
| O2—Cl1—O4 | 108.60 (10) | N2—N3—N4 | 114.64 (14) |
| O3—Cl1—O4 | 109.53 (9) | N2—N3—H3A | 122.7 |
| N2—N1—C6 | 105.96 (15) | N4—N3—H3A | 122.7 |
| C5—N5—C1 | 122.96 (15) | C1—C2—C3 | 118.82 (16) |
| C5—N5—H5A | 118.5 | C1—C2—H2 | 120.6 |
| C1—N5—H5A | 118.5 | C3—C2—H2 | 120.6 |
| N3—N4—C6 | 101.09 (14) | C5—C4—C3 | 119.14 (16) |
| C4—C3—C2 | 119.59 (15) | C5—C4—H4 | 120.4 |
| C4—C3—C6 | 120.69 (15) | C3—C4—H4 | 120.4 |
| C2—C3—C6 | 119.70 (15) | N5—C1—C2 | 119.82 (16) |
| N4—C6—N1 | 112.45 (15) | N5—C1—H1 | 120.1 |
| N4—C6—C3 | 123.79 (15) | C2—C1—H1 | 120.1 |
| N1—C6—C3 | 123.66 (15) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N5—H5A···O3i | 0.86 | 2.28 | 2.964 (2) | 136 |
| N5—H5A···N2ii | 0.86 | 2.38 | 3.059 (2) | 136 |
| N3—H3A···O4iii | 0.86 | 2.21 | 2.884 (2) | 135 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1/2, y−1/2, −z+3/2; (iii) x+1/2, −y+3/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2545).
References
- Dai, W. & Fu, D.-W. (2008). Acta Cryst. E64, o1444. [DOI] [PMC free article] [PubMed]
- Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wang, X.-S., Tang, Y.-Z., Huang, X.-F., Qu, Z.-R., Che, C.-M., Chan, C. W. H. & Xiong, R.-G. (2005). Inorg. Chem.44, 5278–5285. [DOI] [PubMed]
- Wen, X.-C. (2008). Acta Cryst. E64, m768. [DOI] [PMC free article] [PubMed]
- Xiong, R.-G., Xue, X., Zhao, H., You, X.-Z., Abrahams, B. F. & Xue, Z.-L. (2002). Angew. Chem. Int. Ed.41, 3800–3803. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018200/cv2545sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018200/cv2545Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

