Abstract
The asymmetric unit of the title compound, C12H14N4·2C6H7NO3S·2H2O, contains one half of a centrosymmetric 1,4-bis(4,5-dihydro-1H-imidazol-2-yl)benzene (bib) molecule, one 4-aminobenzenesulfonic acid molecule and one water molecule. In the bib molecule, the imidazole ring adopts an envelope conformation. The benzene rings of bib and 4-aminobenzenesulfonic acid are oriented at a dihedral angle of 21.89 (4)°. In the crystal structure, intermolecular N—H⋯O, O—H⋯N and O—H⋯O interactions link the molecules into a three-dimensional network. Weak π–π contacts between the benzene and imidazole rings and between the benzene rings [centroid–centroid distances = 3.895 (1) and 3.833 (1) Å, respectively] may further stabilize the structure.
Related literature
For general background, see: Jeffrey (1997 ▶); Thaimattam et al. (1998 ▶). For related structures, see: Ren et al. (2004a
▶,b
▶, 2007 ▶, 2009 ▶). For imidazole bond lengths, see: Haga et al. (1996 ▶); Hammes et al. (2005 ▶).
Experimental
Crystal data
C12H14N4·2C6H7NO3S·2H2O
M r = 596.70
Orthorhombic,
a = 13.6306 (11) Å
b = 12.698 (1) Å
c = 15.5907 (13) Å
V = 2698.5 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.26 mm−1
T = 273 K
0.15 × 0.12 × 0.10 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.962, T max = 0.975
11859 measured reflections
2346 independent reflections
1856 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.045
wR(F 2) = 0.140
S = 1.08
2346 reflections
182 parameters
All H-atom parameters refined
Δρmax = 0.45 e Å−3
Δρmin = −0.42 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL and PLATON.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032504/hk2751sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032504/hk2751Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O3—H3A⋯O4 | 0.82 | 2.00 | 2.809 (3) | 168 |
| N1—H1A⋯O2i | 0.86 | 2.22 | 2.960 (3) | 145 |
| N1—H1B⋯O3ii | 0.86 | 2.43 | 3.200 (3) | 150 |
| N1—H1B⋯O1ii | 0.86 | 2.46 | 3.170 (4) | 141 |
| N2—H1⋯O3iii | 0.86 | 2.07 | 2.897 (3) | 161 |
| O4—H4A⋯N3iv | 0.85 | 2.08 | 2.760 (3) | 136 |
| O4—H4B⋯O1v | 0.85 | 2.20 | 2.817 (3) | 130 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
.
Acknowledgments
This work was generously supported by the National Natural Science Foundation of China (grant No. 20701016).
supplementary crystallographic information
Comment
Attention has recently focused on the use of supramolecular interactions such as hydrogen bonding and π–π interactions, in addition to coordinate bonds, in the controlled assembly of supramolecular architectures (Jeffrey, 1997). Hydrogen bonds often play a dominant role in crystal engineering because of their combine strength with directionality (Thaimattam et al., 1998). On the other hand, supramolecular systems sustained by soft connections, such as hydrogen bonds, are comparatively more flexible and sensitive to the chemical environment. Consequently hydrogen-bond sustained systems are less designable and remain to be further investigated. We described previously a number of such metal complexes, including imidazole ligand, and have concluded that hydrogen bonding involving this group influences the geometry around the metal atom and the crystallization mechanism (Ren et al., 2004a; Ren et al., 2004b; Ren et al., 2007; Ren et al., 2009). We reported herein the synthesis and crystal structure of the title compound.
The asymmetric unit of the title compound contains one-half of 1,4-bis(4,5-di-hydro-1H-imidazol-2-yl)benzene (bib) ligand, one 4-aminobenzenesulfonic acid (SA) and one water molecules. In bib, the imidazole ring B (N2/N3/C7-C9) adopts envelope conformation with atom C8 displaced by -0.185 (3)Å from the plane of the other ring atoms. Rings A (C1-C6) and C (C10/C11/C12/C10'/C11'/C12') [symmetry code ('): 1 - x, 2 - y, 1 - z] are, of course, planar and they are oriented at a dihedral angle of 21.89 (4)°.
In the crystal structure, intramolecular O-H···O and intermolecular N-H···O, O-H···N and O-H···O interactions (Table 1) link the molecules into a three-dimensional network (Fig. 2), in which they may be effective in the stabilization of the structure. The π–π contacts between the benzene and imidazole rings and between the benzene rings, Cg1—Cg2 and Cg1—Cg3, [where Cg1, Cg2 and Cg3 are centroids of the rings A (C1-C6), B (N2/N3/C7-C9) and C (C10/C11/C12/C10'/C11'/C12'), respectively] may further stabilize the structure, with centroid-centroid distances of 3.895 (1) and 3.833 (1) Å, respectively.
Experimental
For the preparation of 1,4-bis(4,5-dihydro-1H-imidazol-2-yl)benzene, (bib), 1,4-benzenedicarboxylic acid (2.31 g, 13.9 mmol), ethylenediamine (3.70 ml, 50 mmol), ethylenediamine dihydrochloride(6.64 g, 50 mmol) and toluene-p-sulfonic acid (0.208 g, 1.09 mmol) were added to the solvent of ethyleneglycol (20 ml), and the mixture was refluxed for 3 h. About half of the ethylene glycol solvent was then slowly removed by distillation. The residue was dissolved in a mixture of water (40 ml) and concentrated HCl (11 M, 3 ml). The addition of 50% aqueous NaOH gave a yellow precipitate that was purified by recrystallization. The ligand bib was obtained in 83% based on 1,4-benzenedicarboxylic acid (ca 2.50 g). Found: C 66.98; H 6.92; N 26.08%. Calc. for C12H14N4: C 67.27; H 6.59; N 26.15%. Main IR bonds (KBr, cm-1): 3188m, 2936m, 2866m, 1606 s, 1532 s, 1466 s, 1345m, 1270 s, 1191w, 1080w, 981m, 907w, 767w, 687m. For the preparation of the title compound, to a solution of bib (0.043 g, 0.2 mmol) in MeOH (15 ml), an aqueous solution (5 ml) of SA (0.068 g, 0.4 mmol) was added. The solution was allowed at room temperature in air for 3 d by slow evaporation. Large yellow prismatic crystals were obtained, which were collected by filtration, washed with water and dried in vacuum desiccator over silica gel (0.047 g, 54%). Main IR bonds (KBr,cm-1): 3424m, 3354m, 3249w, 1655w, 1603m, 1507m, 1119m, 1024 s, 1001m, 698m, 569w.
Refinement
H atoms were positioned geometrically, with N-H = O.86 Å (for NH and NH2), O-H = 0.82 Å (for OH) and 0.85 Å (for H2O) and C-H = 0.93 and 0.97 Å for aromatic and methylene H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N,O), where x = 1.5 for OH H and x = 1.2 for all other H atoms.
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom-numbering scheme. Hydrogen bond is shown as dashed line [symmetry code ('): 1 - x, 2 - y, 1 - z].
Fig. 2.
A partial packing diagram for the title compound. Hydrogen bonds are shown as dashed lines.
Crystal data
| C12H14N4·2C6H7NO3S·2H2O | F(000) = 1256 |
| Mr = 596.70 | Dx = 1.469 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 3721 reflections |
| a = 13.6306 (11) Å | θ = 2.6–26.3° |
| b = 12.698 (1) Å | µ = 0.26 mm−1 |
| c = 15.5907 (13) Å | T = 273 K |
| V = 2698.5 (4) Å3 | Block, yellow |
| Z = 4 | 0.15 × 0.12 × 0.10 mm |
Data collection
| Bruker SMART CCD area-detector diffractometer | 2346 independent reflections |
| Radiation source: fine-focus sealed tube | 1856 reflections with I > 2σ(I) |
| graphite | Rint = 0.036 |
| φ and ω scans | θmax = 25.1°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −16→15 |
| Tmin = 0.962, Tmax = 0.975 | k = −15→15 |
| 11859 measured reflections | l = −18→14 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.045 | All H-atom parameters refined |
| wR(F2) = 0.140 | w = 1/[σ2(Fo2) + (0.0724P)2 + 1.4974P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.08 | (Δ/σ)max < 0.001 |
| 2346 reflections | Δρmax = 0.45 e Å−3 |
| 182 parameters | Δρmin = −0.42 e Å−3 |
| 0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0010 (5) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.20619 (5) | 0.82812 (5) | 0.31074 (4) | 0.0423 (3) | |
| O1 | 0.29197 (15) | 0.8625 (2) | 0.26382 (13) | 0.0688 (7) | |
| O2 | 0.1875 (2) | 0.71668 (16) | 0.30647 (13) | 0.0681 (7) | |
| O3 | 0.12151 (14) | 0.88982 (15) | 0.28322 (11) | 0.0536 (5) | |
| H3A | 0.0729 | 0.8714 | 0.3104 | 0.080* | |
| O4 | −0.06007 (17) | 0.8498 (2) | 0.36193 (13) | 0.0774 (8) | |
| H4A | −0.0646 | 0.8028 | 0.4006 | 0.093* | |
| H4B | −0.1105 | 0.8846 | 0.3470 | 0.093* | |
| N1 | 0.2770 (2) | 0.9242 (2) | 0.67696 (14) | 0.0615 (8) | |
| H1A | 0.2775 | 0.8740 | 0.7140 | 0.074* | |
| H1B | 0.2884 | 0.9878 | 0.6930 | 0.074* | |
| N2 | 0.51620 (17) | 0.7721 (2) | 0.34661 (15) | 0.0518 (6) | |
| H1 | 0.5368 | 0.8180 | 0.3103 | 0.062* | |
| N3 | 0.46812 (18) | 0.70826 (19) | 0.46926 (16) | 0.0530 (6) | |
| C1 | 0.25816 (19) | 0.90302 (19) | 0.59303 (15) | 0.0384 (6) | |
| C2 | 0.2594 (2) | 0.98296 (19) | 0.53090 (16) | 0.0398 (6) | |
| H2 | 0.2705 | 1.0522 | 0.5476 | 0.048* | |
| C3 | 0.24456 (19) | 0.96036 (18) | 0.44548 (15) | 0.0368 (6) | |
| H3 | 0.2470 | 1.0141 | 0.4050 | 0.044* | |
| C4 | 0.22603 (17) | 0.85807 (18) | 0.41959 (15) | 0.0327 (5) | |
| C5 | 0.22330 (18) | 0.77832 (18) | 0.48013 (15) | 0.0362 (6) | |
| H5 | 0.2105 | 0.7095 | 0.4631 | 0.043* | |
| C6 | 0.2394 (2) | 0.80063 (19) | 0.56551 (15) | 0.0392 (6) | |
| H6 | 0.2378 | 0.7463 | 0.6055 | 0.047* | |
| C7 | 0.49343 (18) | 0.7937 (2) | 0.42682 (17) | 0.0441 (7) | |
| C8 | 0.4824 (3) | 0.6141 (3) | 0.4154 (2) | 0.0657 (9) | |
| H8A | 0.4241 | 0.5703 | 0.4149 | 0.079* | |
| H8B | 0.5377 | 0.5726 | 0.4351 | 0.079* | |
| C9 | 0.5021 (3) | 0.6610 (3) | 0.3270 (2) | 0.0604 (8) | |
| H9A | 0.5604 | 0.6307 | 0.3013 | 0.073* | |
| H9B | 0.4468 | 0.6506 | 0.2889 | 0.073* | |
| C10 | 0.49700 (19) | 0.8996 (2) | 0.46426 (16) | 0.0446 (7) | |
| C11 | 0.5064 (2) | 0.9132 (2) | 0.55335 (17) | 0.0513 (7) | |
| H11 | 0.5105 | 0.8546 | 0.5890 | 0.062* | |
| C12 | 0.4905 (2) | 0.9878 (2) | 0.41216 (17) | 0.0514 (7) | |
| H12 | 0.4839 | 0.9796 | 0.3532 | 0.062* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0514 (5) | 0.0491 (4) | 0.0264 (4) | −0.0001 (3) | 0.0007 (3) | −0.0023 (3) |
| O1 | 0.0604 (14) | 0.1066 (17) | 0.0396 (12) | −0.0006 (13) | 0.0178 (10) | 0.0025 (11) |
| O2 | 0.114 (2) | 0.0497 (12) | 0.0407 (12) | −0.0013 (12) | −0.0076 (11) | −0.0109 (9) |
| O3 | 0.0497 (12) | 0.0712 (13) | 0.0399 (10) | −0.0024 (10) | −0.0102 (9) | 0.0053 (9) |
| O4 | 0.0590 (14) | 0.128 (2) | 0.0449 (13) | 0.0017 (14) | −0.0103 (10) | 0.0270 (13) |
| N1 | 0.097 (2) | 0.0549 (15) | 0.0321 (12) | −0.0210 (14) | −0.0048 (12) | −0.0035 (10) |
| N2 | 0.0504 (14) | 0.0678 (16) | 0.0371 (13) | −0.0018 (12) | 0.0070 (11) | 0.0087 (11) |
| N3 | 0.0438 (14) | 0.0646 (15) | 0.0507 (14) | −0.0019 (12) | 0.0108 (11) | 0.0103 (12) |
| C1 | 0.0396 (14) | 0.0445 (13) | 0.0312 (13) | −0.0052 (12) | 0.0007 (11) | −0.0021 (10) |
| C2 | 0.0468 (16) | 0.0335 (12) | 0.0390 (14) | −0.0056 (11) | 0.0020 (11) | −0.0019 (10) |
| C3 | 0.0389 (14) | 0.0360 (12) | 0.0356 (13) | 0.0004 (11) | 0.0006 (11) | 0.0053 (10) |
| C4 | 0.0317 (13) | 0.0359 (12) | 0.0304 (12) | 0.0021 (10) | 0.0005 (10) | 0.0013 (9) |
| C5 | 0.0457 (15) | 0.0315 (12) | 0.0314 (13) | −0.0014 (11) | −0.0010 (10) | −0.0005 (9) |
| C6 | 0.0466 (15) | 0.0374 (12) | 0.0335 (13) | −0.0011 (12) | −0.0016 (12) | 0.0068 (10) |
| C7 | 0.0290 (14) | 0.0668 (17) | 0.0366 (14) | 0.0049 (13) | 0.0043 (11) | 0.0116 (12) |
| C8 | 0.063 (2) | 0.071 (2) | 0.063 (2) | −0.0182 (17) | 0.0129 (16) | 0.0054 (16) |
| C9 | 0.058 (2) | 0.072 (2) | 0.0507 (18) | −0.0093 (16) | 0.0045 (15) | −0.0012 (15) |
| C10 | 0.0330 (14) | 0.0646 (17) | 0.0361 (14) | 0.0076 (13) | 0.0063 (11) | 0.0110 (12) |
| C11 | 0.0509 (17) | 0.0654 (18) | 0.0377 (15) | 0.0104 (14) | 0.0065 (12) | 0.0146 (13) |
| C12 | 0.0494 (17) | 0.0729 (19) | 0.0318 (14) | 0.0101 (15) | 0.0042 (12) | 0.0094 (13) |
Geometric parameters (Å, °)
| S1—O2 | 1.439 (2) | C3—C4 | 1.383 (3) |
| S1—O1 | 1.447 (2) | C3—H3 | 0.9300 |
| S1—O3 | 1.460 (2) | C4—C5 | 1.385 (3) |
| S1—C4 | 1.760 (2) | C5—C6 | 1.379 (3) |
| O3—H3A | 0.8200 | C5—H5 | 0.9300 |
| O4—H4A | 0.8501 | C6—H6 | 0.9300 |
| O4—H4B | 0.8501 | C7—C10 | 1.467 (4) |
| N1—C1 | 1.360 (3) | C8—C9 | 1.525 (4) |
| N1—H1A | 0.8600 | C8—H8A | 0.9700 |
| N1—H1B | 0.8600 | C8—H8B | 0.9700 |
| N2—C7 | 1.317 (3) | C9—H9A | 0.9700 |
| N2—C9 | 1.455 (4) | C9—H9B | 0.9700 |
| N2—H1 | 0.8600 | C10—C12 | 1.387 (4) |
| N3—C7 | 1.317 (3) | C10—C11 | 1.405 (4) |
| N3—C8 | 1.474 (4) | C11—C12i | 1.368 (4) |
| C1—C6 | 1.393 (3) | C11—H11 | 0.9300 |
| C1—C2 | 1.403 (3) | C12—C11i | 1.368 (4) |
| C2—C3 | 1.377 (3) | C12—H12 | 0.9300 |
| C2—H2 | 0.9300 | ||
| O2—S1—O1 | 114.61 (15) | C4—C5—H5 | 119.9 |
| O2—S1—O3 | 111.99 (14) | C5—C6—C1 | 121.2 (2) |
| O1—S1—O3 | 109.17 (13) | C5—C6—H6 | 119.4 |
| O2—S1—C4 | 106.51 (12) | C1—C6—H6 | 119.4 |
| O1—S1—C4 | 107.34 (13) | N3—C7—N2 | 111.6 (3) |
| O3—S1—C4 | 106.79 (11) | N3—C7—C10 | 124.3 (2) |
| S1—O3—H3A | 109.5 | N2—C7—C10 | 124.1 (2) |
| H4A—O4—H4B | 120.0 | N3—C8—C9 | 102.8 (3) |
| C1—N1—H1A | 120.0 | N3—C8—H8A | 111.2 |
| C1—N1—H1B | 120.0 | C9—C8—H8A | 111.2 |
| H1A—N1—H1B | 120.0 | N3—C8—H8B | 111.2 |
| C7—N2—C9 | 111.7 (2) | C9—C8—H8B | 111.2 |
| C7—N2—H1 | 124.2 | H8A—C8—H8B | 109.1 |
| C9—N2—H1 | 124.2 | N2—C9—C8 | 102.3 (2) |
| C7—N3—C8 | 110.3 (2) | N2—C9—H9A | 111.3 |
| N1—C1—C6 | 121.0 (2) | C8—C9—H9A | 111.3 |
| N1—C1—C2 | 121.2 (2) | N2—C9—H9B | 111.3 |
| C6—C1—C2 | 117.7 (2) | C8—C9—H9B | 111.3 |
| C3—C2—C1 | 121.0 (2) | H9A—C9—H9B | 109.2 |
| C3—C2—H2 | 119.5 | C12—C10—C11 | 119.0 (3) |
| C1—C2—H2 | 119.5 | C12—C10—C7 | 120.4 (2) |
| C2—C3—C4 | 120.3 (2) | C11—C10—C7 | 120.6 (2) |
| C2—C3—H3 | 119.8 | C12i—C11—C10 | 120.3 (3) |
| C4—C3—H3 | 119.8 | C12i—C11—H11 | 119.9 |
| C3—C4—C5 | 119.5 (2) | C10—C11—H11 | 119.9 |
| C3—C4—S1 | 120.81 (18) | C11i—C12—C10 | 120.7 (3) |
| C5—C4—S1 | 119.67 (18) | C11i—C12—H12 | 119.7 |
| C6—C5—C4 | 120.2 (2) | C10—C12—H12 | 119.7 |
| C6—C5—H5 | 119.9 |
Symmetry codes: (i) −x+1, −y+2, −z+1.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O3—H3A···O4 | 0.82 | 2.00 | 2.809 (3) | 168 |
| N1—H1A···O2ii | 0.86 | 2.22 | 2.960 (3) | 145 |
| N1—H1B···O3iii | 0.86 | 2.43 | 3.200 (3) | 150 |
| N1—H1B···O1iii | 0.86 | 2.46 | 3.170 (4) | 141 |
| N2—H1···O3iv | 0.86 | 2.07 | 2.897 (3) | 161 |
| O4—H4A···N3v | 0.85 | 2.08 | 2.760 (3) | 136 |
| O4—H4B···O1vi | 0.85 | 2.20 | 2.817 (3) | 130 |
Symmetry codes: (ii) x, −y+3/2, z+1/2; (iii) −x+1/2, −y+2, z+1/2; (iv) x+1/2, y, −z+1/2; (v) x−1/2, −y+3/2, −z+1; (vi) x−1/2, y, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2751).
References
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- Ren, C.-X., Ye, B.-H., He, F., Cheng, L. & Chen, X.-M. (2004a). CrystEngComm, 6, 200–206.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032504/hk2751sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032504/hk2751Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


