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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Aug 29;65(Pt 9):o2289. doi: 10.1107/S1600536809033984

2,2-Dimethyl-5-(1-naphthyl­amino­methyl­ene)-1,3-dioxane-4,6-dione

Zhi Li a, Rui Li a,*, Zhen-Yu Ding a
PMCID: PMC2969915  PMID: 21577681

Abstract

The benzyl ring of the title compound, C17H15NO4, is twisted away from the plane defined by five atoms of the dioxane ring by 34.83 (4)°. The dioxane ring exhibits a half-boat conformation, with the C atom between the dioxane O atoms 0.571 (8) Å out of the plane through the remainder of the ring. An intra­molecular N—H⋯O hydrogen bond may contribute to the stabilization of the planar conformation of the mol­ecule. In the crystal, inversion dimers linked by pairs of C—H⋯O bonds occur.

Related literature

For the synthesis of related compounds, see: Cassis et al. (1985). For the pharmacological activity of 4(1H)-quinolone structures, see: Ruchelman et al. (2003).graphic file with name e-65-o2289-scheme1.jpg

Experimental

Crystal data

  • C17H15NO4

  • M r = 297.30

  • Triclinic, Inline graphic

  • a = 7.4696 (11) Å

  • b = 8.0805 (12) Å

  • c = 12.1240 (18) Å

  • α = 98.601 (2)°

  • β = 96.428 (2)°

  • γ = 92.198 (2)°

  • V = 717.87 (18) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 153 K

  • 0.25 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: none

  • 4513 measured reflections

  • 3194 independent reflections

  • 2571 reflections with I > 2σ(I)

  • R int = 0.014

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.110

  • S = 1.03

  • 3194 reflections

  • 206 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.16 e Å−3

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033984/ez2178sup1.cif

e-65-o2289-sup1.cif (16.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033984/ez2178Isup2.hkl

e-65-o2289-Isup2.hkl (156.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O3 0.920 (18) 1.982 (18) 2.7130 (16) 135.2 (15)
C1—H1C⋯O4i 0.98 2.60 3.3709 (19) 136

Symmetry code: (i) Inline graphic.

Acknowledgments

This research was supported financially by the State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences.

supplementary crystallographic information

Comment

4(1H)-Quinolone structures have long attracted pharmacological interest as anticancer agents, anti-malarial agents and reversible (H+/K+) ATPase inhibitors (Ruchelman et al., 2003). Thermolysis of 5-arylaminomethylene-2,2-dimethyl-1,3-dioxane-4,6-diones is an effective method to synthesize 4(1H)quinolone derivatives (Cassis et al., 1985).

The benzyl ring is twisted away from the plane defined by the dioxane ring by 34.83 (4)°. In turn, the dioxane ring of the title compound exhibits an envelope conformation, in which the flap atom, the C atom between the dioxane oxygen atoms, is -0.571 (8) Å out of the plane. An intramolecular N—H···O hydrogen bond (Table 1) could lead to the dioxane ring and the aminomethylene group taking up their planar conformation.

Experimental

An ethanol solution (50 ml) of 2,2-dimethyl-1,3-dioxane-4,6-dione (Meldrum's acid) (1.44 g, 0.01 mol) and methylorthoformate (1.27 g, 0.012 mol) was heated to reflux for 2 h, then the naphthalen-1-amine (1.43 g, 0.01 mol) was added into the above solution. The mixture was heated under reflux for another 8 h and then filtered. Single crystals were obtained from the filtrate after 2 days.

Refinement

The imino H atom was located in a difference Fourier map and refined isotropically. Other H atoms were positioned geometrically with C—H = 0.93 (aromatic) or 0.96 Å (methyl), and refined using a riding model with Uĩso(H) = 1.5Ueq(C) for methyl and 1.2Ueq(C) for the others.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. The hydrogen bond is shown by a dashed line.

Crystal data

C17H15NO4 Z = 2
Mr = 297.30 F(000) = 312
Triclinic, P1 Dx = 1.375 Mg m3
a = 7.4696 (11) Å Mo Kα radiation, λ = 0.71073 Å
b = 8.0805 (12) Å Cell parameters from 2197 reflections
c = 12.1240 (18) Å θ = 2.6–27.5°
α = 98.601 (2)° µ = 0.10 mm1
β = 96.428 (2)° T = 153 K
γ = 92.198 (2)° Block, colourless
V = 717.87 (18) Å3 0.25 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer 2571 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.014
graphite θmax = 27.6°, θmin = 2.6°
φ and ω scans h = −9→6
4513 measured reflections k = −10→10
3194 independent reflections l = −15→15

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.040 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110 w = 1/[σ2(Fo2) + (0.0462P)2 + 0.1278P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
3194 reflections Δρmax = 0.18 e Å3
206 parameters Δρmin = −0.16 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.204 (9)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.75507 (13) 0.44446 (12) 0.48110 (8) 0.0482 (3)
O2 0.61634 (12) 0.29559 (12) 0.60505 (7) 0.0468 (3)
O3 0.66547 (15) 0.40648 (13) 0.29855 (8) 0.0567 (3)
O4 0.36615 (13) 0.13711 (12) 0.54766 (8) 0.0501 (3)
N1 0.41749 (15) 0.15238 (15) 0.21325 (9) 0.0431 (3)
H1 0.496 (3) 0.236 (2) 0.2012 (15) 0.074 (5)*
C1 0.9036 (2) 0.21096 (19) 0.54644 (13) 0.0529 (4)
H1A 0.9247 0.1511 0.6109 0.079*
H1B 1.0193 0.2541 0.5281 0.079*
H1C 0.8432 0.1340 0.4816 0.079*
C2 0.8669 (2) 0.4816 (2) 0.67397 (13) 0.0583 (4)
H2A 0.7830 0.5704 0.6887 0.087*
H2B 0.9809 0.5306 0.6571 0.087*
H2C 0.8895 0.4262 0.7404 0.087*
C3 0.78588 (18) 0.35520 (17) 0.57518 (11) 0.0433 (3)
C4 0.64805 (18) 0.36396 (16) 0.38885 (11) 0.0420 (3)
C5 0.51881 (17) 0.23873 (16) 0.40821 (10) 0.0384 (3)
C6 0.49111 (17) 0.21600 (16) 0.52166 (10) 0.0393 (3)
C7 0.41364 (17) 0.14044 (16) 0.32061 (10) 0.0401 (3)
H7 0.3322 0.0579 0.3385 0.048*
C8 0.32676 (17) 0.04147 (17) 0.12053 (10) 0.0412 (3)
C9 0.2809 (2) −0.12053 (18) 0.12899 (12) 0.0502 (3)
H9 0.3068 −0.1605 0.1986 0.060*
C10 0.1953 (2) −0.2285 (2) 0.03460 (14) 0.0598 (4)
H10 0.1584 −0.3399 0.0416 0.072*
C11 0.1648 (2) −0.1750 (2) −0.06667 (13) 0.0593 (4)
H11 0.1097 −0.2505 −0.1301 0.071*
C12 0.21389 (18) −0.0086 (2) −0.07868 (11) 0.0495 (4)
C13 0.1908 (2) 0.0502 (3) −0.18422 (12) 0.0624 (5)
H13 0.1415 −0.0247 −0.2495 0.075*
C14 0.2376 (2) 0.2106 (3) −0.19338 (13) 0.0663 (5)
H14 0.2247 0.2460 −0.2650 0.080*
C15 0.3050 (2) 0.3242 (2) −0.09805 (13) 0.0608 (4)
H15 0.3325 0.4378 −0.1047 0.073*
C16 0.3315 (2) 0.2734 (2) 0.00486 (12) 0.0513 (4)
H16 0.3775 0.3521 0.0690 0.062*
C17 0.29151 (17) 0.10513 (18) 0.01706 (10) 0.0428 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0558 (6) 0.0465 (5) 0.0405 (5) −0.0043 (4) −0.0028 (4) 0.0094 (4)
O2 0.0450 (5) 0.0633 (6) 0.0309 (5) −0.0001 (4) 0.0023 (4) 0.0057 (4)
O3 0.0686 (7) 0.0633 (6) 0.0400 (6) −0.0081 (5) 0.0034 (5) 0.0195 (5)
O4 0.0499 (6) 0.0620 (6) 0.0394 (5) −0.0027 (5) 0.0111 (4) 0.0081 (4)
N1 0.0441 (6) 0.0532 (7) 0.0315 (6) 0.0003 (5) 0.0015 (4) 0.0076 (5)
C1 0.0452 (8) 0.0568 (8) 0.0550 (9) 0.0065 (6) −0.0014 (6) 0.0080 (7)
C2 0.0610 (9) 0.0622 (9) 0.0457 (8) −0.0021 (7) −0.0061 (7) −0.0001 (7)
C3 0.0440 (7) 0.0503 (7) 0.0346 (7) 0.0002 (6) 0.0001 (5) 0.0074 (5)
C4 0.0478 (7) 0.0433 (7) 0.0349 (7) 0.0044 (5) 0.0014 (5) 0.0081 (5)
C5 0.0398 (7) 0.0448 (7) 0.0311 (6) 0.0056 (5) 0.0023 (5) 0.0079 (5)
C6 0.0398 (7) 0.0447 (7) 0.0335 (6) 0.0069 (5) 0.0037 (5) 0.0055 (5)
C7 0.0391 (7) 0.0483 (7) 0.0341 (6) 0.0060 (5) 0.0047 (5) 0.0087 (5)
C8 0.0357 (6) 0.0547 (8) 0.0322 (6) 0.0057 (5) 0.0033 (5) 0.0030 (5)
C9 0.0539 (8) 0.0557 (8) 0.0414 (7) 0.0080 (6) 0.0071 (6) 0.0062 (6)
C10 0.0617 (10) 0.0548 (9) 0.0594 (10) 0.0020 (7) 0.0080 (7) −0.0026 (7)
C11 0.0517 (9) 0.0699 (10) 0.0475 (9) 0.0058 (7) −0.0028 (7) −0.0136 (7)
C12 0.0386 (7) 0.0714 (9) 0.0354 (7) 0.0127 (6) 0.0010 (5) −0.0017 (6)
C13 0.0523 (9) 0.0978 (13) 0.0327 (7) 0.0195 (8) −0.0036 (6) −0.0017 (8)
C14 0.0590 (10) 0.1060 (14) 0.0386 (8) 0.0215 (9) 0.0055 (7) 0.0229 (9)
C15 0.0567 (9) 0.0829 (11) 0.0477 (9) 0.0095 (8) 0.0052 (7) 0.0246 (8)
C16 0.0489 (8) 0.0663 (9) 0.0391 (7) 0.0034 (7) 0.0023 (6) 0.0119 (6)
C17 0.0343 (6) 0.0622 (8) 0.0315 (6) 0.0089 (6) 0.0040 (5) 0.0044 (6)

Geometric parameters (Å, °)

O1—C4 1.3622 (15) C7—H7 0.9500
O1—C3 1.4403 (15) C8—C9 1.362 (2)
O2—C6 1.3632 (15) C8—C17 1.4271 (18)
O2—C3 1.4405 (16) C9—C10 1.405 (2)
O3—C4 1.2142 (15) C9—H9 0.9500
O4—C6 1.2072 (15) C10—C11 1.360 (2)
N1—C7 1.3229 (16) C10—H10 0.9500
N1—C8 1.4170 (16) C11—C12 1.413 (2)
N1—H1 0.920 (18) C11—H11 0.9500
C1—C3 1.510 (2) C12—C17 1.4204 (19)
C1—H1A 0.9800 C12—C13 1.425 (2)
C1—H1B 0.9800 C13—C14 1.353 (3)
C1—H1C 0.9800 C13—H13 0.9500
C2—C3 1.5063 (19) C14—C15 1.396 (2)
C2—H2A 0.9800 C14—H14 0.9500
C2—H2B 0.9800 C15—C16 1.367 (2)
C2—H2C 0.9800 C15—H15 0.9500
C4—C5 1.4345 (18) C16—C17 1.414 (2)
C5—C7 1.3743 (17) C16—H16 0.9500
C5—C6 1.4508 (17)
C4—O1—C3 116.84 (10) N1—C7—H7 117.6
C6—O2—C3 118.48 (10) C5—C7—H7 117.6
C7—N1—C8 126.21 (12) C9—C8—N1 121.29 (12)
C7—N1—H1 113.8 (11) C9—C8—C17 121.54 (12)
C8—N1—H1 119.7 (11) N1—C8—C17 117.13 (12)
C3—C1—H1A 109.5 C8—C9—C10 119.85 (14)
C3—C1—H1B 109.5 C8—C9—H9 120.1
H1A—C1—H1B 109.5 C10—C9—H9 120.1
C3—C1—H1C 109.5 C11—C10—C9 120.64 (15)
H1A—C1—H1C 109.5 C11—C10—H10 119.7
H1B—C1—H1C 109.5 C9—C10—H10 119.7
C3—C2—H2A 109.5 C10—C11—C12 120.82 (14)
C3—C2—H2B 109.5 C10—C11—H11 119.6
H2A—C2—H2B 109.5 C12—C11—H11 119.6
C3—C2—H2C 109.5 C11—C12—C17 119.39 (13)
H2A—C2—H2C 109.5 C11—C12—C13 122.49 (14)
H2B—C2—H2C 109.5 C17—C12—C13 118.11 (15)
O1—C3—O2 110.06 (10) C14—C13—C12 121.36 (15)
O1—C3—C2 106.69 (11) C14—C13—H13 119.3
O2—C3—C2 105.71 (11) C12—C13—H13 119.3
O1—C3—C1 109.85 (11) C13—C14—C15 120.28 (15)
O2—C3—C1 110.62 (11) C13—C14—H14 119.9
C2—C3—C1 113.75 (12) C15—C14—H14 119.9
O3—C4—O1 118.14 (12) C16—C15—C14 120.52 (16)
O3—C4—C5 125.52 (12) C16—C15—H15 119.7
O1—C4—C5 116.31 (11) C14—C15—H15 119.7
C7—C5—C4 121.36 (11) C15—C16—C17 120.84 (15)
C7—C5—C6 117.92 (11) C15—C16—H16 119.6
C4—C5—C6 120.69 (11) C17—C16—H16 119.6
O4—C6—O2 118.28 (11) C16—C17—C12 118.73 (13)
O4—C6—C5 125.74 (12) C16—C17—C8 123.65 (12)
O2—C6—C5 115.95 (11) C12—C17—C8 117.61 (13)
N1—C7—C5 124.76 (12)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O3 0.920 (18) 1.982 (18) 2.7130 (16) 135.2 (15)
C1—H1C···O4i 0.98 2.60 3.3709 (19) 136

Symmetry codes: (i) −x+1, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: EZ2178).

References

  1. Bruker (2000). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2001). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Cassis, R., Tapia, R. & Valderrama, J. A. (1985). Synth. Commun.15, 125–133.
  4. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  5. Ruchelman, A. L., Singh, S. K., Ray, A., Wu, X. H., Yang, J. M., Li, T. K., Liu, A., Liu, L. F. & LaVoie, E. J. (2003). Bioorg. Med. Chem.11, 2061–2073. [DOI] [PubMed]
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033984/ez2178sup1.cif

e-65-o2289-sup1.cif (16.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033984/ez2178Isup2.hkl

e-65-o2289-Isup2.hkl (156.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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