Abstract
The benzyl ring of the title compound, C17H15NO4, is twisted away from the plane defined by five atoms of the dioxane ring by 34.83 (4)°. The dioxane ring exhibits a half-boat conformation, with the C atom between the dioxane O atoms 0.571 (8) Å out of the plane through the remainder of the ring. An intramolecular N—H⋯O hydrogen bond may contribute to the stabilization of the planar conformation of the molecule. In the crystal, inversion dimers linked by pairs of C—H⋯O bonds occur.
Related literature
For the synthesis of related compounds, see: Cassis et al. (1985 ▶). For the pharmacological activity of 4(1H)-quinolone structures, see: Ruchelman et al. (2003 ▶).
Experimental
Crystal data
C17H15NO4
M r = 297.30
Triclinic,
a = 7.4696 (11) Å
b = 8.0805 (12) Å
c = 12.1240 (18) Å
α = 98.601 (2)°
β = 96.428 (2)°
γ = 92.198 (2)°
V = 717.87 (18) Å3
Z = 2
Mo Kα radiation
μ = 0.10 mm−1
T = 153 K
0.25 × 0.20 × 0.20 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: none
4513 measured reflections
3194 independent reflections
2571 reflections with I > 2σ(I)
R int = 0.014
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.110
S = 1.03
3194 reflections
206 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.18 e Å−3
Δρmin = −0.16 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033984/ez2178sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033984/ez2178Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O3 | 0.920 (18) | 1.982 (18) | 2.7130 (16) | 135.2 (15) |
| C1—H1C⋯O4i | 0.98 | 2.60 | 3.3709 (19) | 136 |
Symmetry code: (i)
.
Acknowledgments
This research was supported financially by the State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences.
supplementary crystallographic information
Comment
4(1H)-Quinolone structures have long attracted pharmacological interest as anticancer agents, anti-malarial agents and reversible (H+/K+) ATPase inhibitors (Ruchelman et al., 2003). Thermolysis of 5-arylaminomethylene-2,2-dimethyl-1,3-dioxane-4,6-diones is an effective method to synthesize 4(1H)quinolone derivatives (Cassis et al., 1985).
The benzyl ring is twisted away from the plane defined by the dioxane ring by 34.83 (4)°. In turn, the dioxane ring of the title compound exhibits an envelope conformation, in which the flap atom, the C atom between the dioxane oxygen atoms, is -0.571 (8) Å out of the plane. An intramolecular N—H···O hydrogen bond (Table 1) could lead to the dioxane ring and the aminomethylene group taking up their planar conformation.
Experimental
An ethanol solution (50 ml) of 2,2-dimethyl-1,3-dioxane-4,6-dione (Meldrum's acid) (1.44 g, 0.01 mol) and methylorthoformate (1.27 g, 0.012 mol) was heated to reflux for 2 h, then the naphthalen-1-amine (1.43 g, 0.01 mol) was added into the above solution. The mixture was heated under reflux for another 8 h and then filtered. Single crystals were obtained from the filtrate after 2 days.
Refinement
The imino H atom was located in a difference Fourier map and refined isotropically. Other H atoms were positioned geometrically with C—H = 0.93 (aromatic) or 0.96 Å (methyl), and refined using a riding model with Uĩso(H) = 1.5Ueq(C) for methyl and 1.2Ueq(C) for the others.
Figures
Fig. 1.
The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. The hydrogen bond is shown by a dashed line.
Crystal data
| C17H15NO4 | Z = 2 |
| Mr = 297.30 | F(000) = 312 |
| Triclinic, P1 | Dx = 1.375 Mg m−3 |
| a = 7.4696 (11) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 8.0805 (12) Å | Cell parameters from 2197 reflections |
| c = 12.1240 (18) Å | θ = 2.6–27.5° |
| α = 98.601 (2)° | µ = 0.10 mm−1 |
| β = 96.428 (2)° | T = 153 K |
| γ = 92.198 (2)° | Block, colourless |
| V = 717.87 (18) Å3 | 0.25 × 0.20 × 0.20 mm |
Data collection
| Bruker SMART CCD area-detector diffractometer | 2571 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.014 |
| graphite | θmax = 27.6°, θmin = 2.6° |
| φ and ω scans | h = −9→6 |
| 4513 measured reflections | k = −10→10 |
| 3194 independent reflections | l = −15→15 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.110 | w = 1/[σ2(Fo2) + (0.0462P)2 + 0.1278P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max < 0.001 |
| 3194 reflections | Δρmax = 0.18 e Å−3 |
| 206 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.204 (9) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.75507 (13) | 0.44446 (12) | 0.48110 (8) | 0.0482 (3) | |
| O2 | 0.61634 (12) | 0.29559 (12) | 0.60505 (7) | 0.0468 (3) | |
| O3 | 0.66547 (15) | 0.40648 (13) | 0.29855 (8) | 0.0567 (3) | |
| O4 | 0.36615 (13) | 0.13711 (12) | 0.54766 (8) | 0.0501 (3) | |
| N1 | 0.41749 (15) | 0.15238 (15) | 0.21325 (9) | 0.0431 (3) | |
| H1 | 0.496 (3) | 0.236 (2) | 0.2012 (15) | 0.074 (5)* | |
| C1 | 0.9036 (2) | 0.21096 (19) | 0.54644 (13) | 0.0529 (4) | |
| H1A | 0.9247 | 0.1511 | 0.6109 | 0.079* | |
| H1B | 1.0193 | 0.2541 | 0.5281 | 0.079* | |
| H1C | 0.8432 | 0.1340 | 0.4816 | 0.079* | |
| C2 | 0.8669 (2) | 0.4816 (2) | 0.67397 (13) | 0.0583 (4) | |
| H2A | 0.7830 | 0.5704 | 0.6887 | 0.087* | |
| H2B | 0.9809 | 0.5306 | 0.6571 | 0.087* | |
| H2C | 0.8895 | 0.4262 | 0.7404 | 0.087* | |
| C3 | 0.78588 (18) | 0.35520 (17) | 0.57518 (11) | 0.0433 (3) | |
| C4 | 0.64805 (18) | 0.36396 (16) | 0.38885 (11) | 0.0420 (3) | |
| C5 | 0.51881 (17) | 0.23873 (16) | 0.40821 (10) | 0.0384 (3) | |
| C6 | 0.49111 (17) | 0.21600 (16) | 0.52166 (10) | 0.0393 (3) | |
| C7 | 0.41364 (17) | 0.14044 (16) | 0.32061 (10) | 0.0401 (3) | |
| H7 | 0.3322 | 0.0579 | 0.3385 | 0.048* | |
| C8 | 0.32676 (17) | 0.04147 (17) | 0.12053 (10) | 0.0412 (3) | |
| C9 | 0.2809 (2) | −0.12053 (18) | 0.12899 (12) | 0.0502 (3) | |
| H9 | 0.3068 | −0.1605 | 0.1986 | 0.060* | |
| C10 | 0.1953 (2) | −0.2285 (2) | 0.03460 (14) | 0.0598 (4) | |
| H10 | 0.1584 | −0.3399 | 0.0416 | 0.072* | |
| C11 | 0.1648 (2) | −0.1750 (2) | −0.06667 (13) | 0.0593 (4) | |
| H11 | 0.1097 | −0.2505 | −0.1301 | 0.071* | |
| C12 | 0.21389 (18) | −0.0086 (2) | −0.07868 (11) | 0.0495 (4) | |
| C13 | 0.1908 (2) | 0.0502 (3) | −0.18422 (12) | 0.0624 (5) | |
| H13 | 0.1415 | −0.0247 | −0.2495 | 0.075* | |
| C14 | 0.2376 (2) | 0.2106 (3) | −0.19338 (13) | 0.0663 (5) | |
| H14 | 0.2247 | 0.2460 | −0.2650 | 0.080* | |
| C15 | 0.3050 (2) | 0.3242 (2) | −0.09805 (13) | 0.0608 (4) | |
| H15 | 0.3325 | 0.4378 | −0.1047 | 0.073* | |
| C16 | 0.3315 (2) | 0.2734 (2) | 0.00486 (12) | 0.0513 (4) | |
| H16 | 0.3775 | 0.3521 | 0.0690 | 0.062* | |
| C17 | 0.29151 (17) | 0.10513 (18) | 0.01706 (10) | 0.0428 (3) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0558 (6) | 0.0465 (5) | 0.0405 (5) | −0.0043 (4) | −0.0028 (4) | 0.0094 (4) |
| O2 | 0.0450 (5) | 0.0633 (6) | 0.0309 (5) | −0.0001 (4) | 0.0023 (4) | 0.0057 (4) |
| O3 | 0.0686 (7) | 0.0633 (6) | 0.0400 (6) | −0.0081 (5) | 0.0034 (5) | 0.0195 (5) |
| O4 | 0.0499 (6) | 0.0620 (6) | 0.0394 (5) | −0.0027 (5) | 0.0111 (4) | 0.0081 (4) |
| N1 | 0.0441 (6) | 0.0532 (7) | 0.0315 (6) | 0.0003 (5) | 0.0015 (4) | 0.0076 (5) |
| C1 | 0.0452 (8) | 0.0568 (8) | 0.0550 (9) | 0.0065 (6) | −0.0014 (6) | 0.0080 (7) |
| C2 | 0.0610 (9) | 0.0622 (9) | 0.0457 (8) | −0.0021 (7) | −0.0061 (7) | −0.0001 (7) |
| C3 | 0.0440 (7) | 0.0503 (7) | 0.0346 (7) | 0.0002 (6) | 0.0001 (5) | 0.0074 (5) |
| C4 | 0.0478 (7) | 0.0433 (7) | 0.0349 (7) | 0.0044 (5) | 0.0014 (5) | 0.0081 (5) |
| C5 | 0.0398 (7) | 0.0448 (7) | 0.0311 (6) | 0.0056 (5) | 0.0023 (5) | 0.0079 (5) |
| C6 | 0.0398 (7) | 0.0447 (7) | 0.0335 (6) | 0.0069 (5) | 0.0037 (5) | 0.0055 (5) |
| C7 | 0.0391 (7) | 0.0483 (7) | 0.0341 (6) | 0.0060 (5) | 0.0047 (5) | 0.0087 (5) |
| C8 | 0.0357 (6) | 0.0547 (8) | 0.0322 (6) | 0.0057 (5) | 0.0033 (5) | 0.0030 (5) |
| C9 | 0.0539 (8) | 0.0557 (8) | 0.0414 (7) | 0.0080 (6) | 0.0071 (6) | 0.0062 (6) |
| C10 | 0.0617 (10) | 0.0548 (9) | 0.0594 (10) | 0.0020 (7) | 0.0080 (7) | −0.0026 (7) |
| C11 | 0.0517 (9) | 0.0699 (10) | 0.0475 (9) | 0.0058 (7) | −0.0028 (7) | −0.0136 (7) |
| C12 | 0.0386 (7) | 0.0714 (9) | 0.0354 (7) | 0.0127 (6) | 0.0010 (5) | −0.0017 (6) |
| C13 | 0.0523 (9) | 0.0978 (13) | 0.0327 (7) | 0.0195 (8) | −0.0036 (6) | −0.0017 (8) |
| C14 | 0.0590 (10) | 0.1060 (14) | 0.0386 (8) | 0.0215 (9) | 0.0055 (7) | 0.0229 (9) |
| C15 | 0.0567 (9) | 0.0829 (11) | 0.0477 (9) | 0.0095 (8) | 0.0052 (7) | 0.0246 (8) |
| C16 | 0.0489 (8) | 0.0663 (9) | 0.0391 (7) | 0.0034 (7) | 0.0023 (6) | 0.0119 (6) |
| C17 | 0.0343 (6) | 0.0622 (8) | 0.0315 (6) | 0.0089 (6) | 0.0040 (5) | 0.0044 (6) |
Geometric parameters (Å, °)
| O1—C4 | 1.3622 (15) | C7—H7 | 0.9500 |
| O1—C3 | 1.4403 (15) | C8—C9 | 1.362 (2) |
| O2—C6 | 1.3632 (15) | C8—C17 | 1.4271 (18) |
| O2—C3 | 1.4405 (16) | C9—C10 | 1.405 (2) |
| O3—C4 | 1.2142 (15) | C9—H9 | 0.9500 |
| O4—C6 | 1.2072 (15) | C10—C11 | 1.360 (2) |
| N1—C7 | 1.3229 (16) | C10—H10 | 0.9500 |
| N1—C8 | 1.4170 (16) | C11—C12 | 1.413 (2) |
| N1—H1 | 0.920 (18) | C11—H11 | 0.9500 |
| C1—C3 | 1.510 (2) | C12—C17 | 1.4204 (19) |
| C1—H1A | 0.9800 | C12—C13 | 1.425 (2) |
| C1—H1B | 0.9800 | C13—C14 | 1.353 (3) |
| C1—H1C | 0.9800 | C13—H13 | 0.9500 |
| C2—C3 | 1.5063 (19) | C14—C15 | 1.396 (2) |
| C2—H2A | 0.9800 | C14—H14 | 0.9500 |
| C2—H2B | 0.9800 | C15—C16 | 1.367 (2) |
| C2—H2C | 0.9800 | C15—H15 | 0.9500 |
| C4—C5 | 1.4345 (18) | C16—C17 | 1.414 (2) |
| C5—C7 | 1.3743 (17) | C16—H16 | 0.9500 |
| C5—C6 | 1.4508 (17) | ||
| C4—O1—C3 | 116.84 (10) | N1—C7—H7 | 117.6 |
| C6—O2—C3 | 118.48 (10) | C5—C7—H7 | 117.6 |
| C7—N1—C8 | 126.21 (12) | C9—C8—N1 | 121.29 (12) |
| C7—N1—H1 | 113.8 (11) | C9—C8—C17 | 121.54 (12) |
| C8—N1—H1 | 119.7 (11) | N1—C8—C17 | 117.13 (12) |
| C3—C1—H1A | 109.5 | C8—C9—C10 | 119.85 (14) |
| C3—C1—H1B | 109.5 | C8—C9—H9 | 120.1 |
| H1A—C1—H1B | 109.5 | C10—C9—H9 | 120.1 |
| C3—C1—H1C | 109.5 | C11—C10—C9 | 120.64 (15) |
| H1A—C1—H1C | 109.5 | C11—C10—H10 | 119.7 |
| H1B—C1—H1C | 109.5 | C9—C10—H10 | 119.7 |
| C3—C2—H2A | 109.5 | C10—C11—C12 | 120.82 (14) |
| C3—C2—H2B | 109.5 | C10—C11—H11 | 119.6 |
| H2A—C2—H2B | 109.5 | C12—C11—H11 | 119.6 |
| C3—C2—H2C | 109.5 | C11—C12—C17 | 119.39 (13) |
| H2A—C2—H2C | 109.5 | C11—C12—C13 | 122.49 (14) |
| H2B—C2—H2C | 109.5 | C17—C12—C13 | 118.11 (15) |
| O1—C3—O2 | 110.06 (10) | C14—C13—C12 | 121.36 (15) |
| O1—C3—C2 | 106.69 (11) | C14—C13—H13 | 119.3 |
| O2—C3—C2 | 105.71 (11) | C12—C13—H13 | 119.3 |
| O1—C3—C1 | 109.85 (11) | C13—C14—C15 | 120.28 (15) |
| O2—C3—C1 | 110.62 (11) | C13—C14—H14 | 119.9 |
| C2—C3—C1 | 113.75 (12) | C15—C14—H14 | 119.9 |
| O3—C4—O1 | 118.14 (12) | C16—C15—C14 | 120.52 (16) |
| O3—C4—C5 | 125.52 (12) | C16—C15—H15 | 119.7 |
| O1—C4—C5 | 116.31 (11) | C14—C15—H15 | 119.7 |
| C7—C5—C4 | 121.36 (11) | C15—C16—C17 | 120.84 (15) |
| C7—C5—C6 | 117.92 (11) | C15—C16—H16 | 119.6 |
| C4—C5—C6 | 120.69 (11) | C17—C16—H16 | 119.6 |
| O4—C6—O2 | 118.28 (11) | C16—C17—C12 | 118.73 (13) |
| O4—C6—C5 | 125.74 (12) | C16—C17—C8 | 123.65 (12) |
| O2—C6—C5 | 115.95 (11) | C12—C17—C8 | 117.61 (13) |
| N1—C7—C5 | 124.76 (12) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O3 | 0.920 (18) | 1.982 (18) | 2.7130 (16) | 135.2 (15) |
| C1—H1C···O4i | 0.98 | 2.60 | 3.3709 (19) | 136 |
Symmetry codes: (i) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: EZ2178).
References
- Bruker (2000). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2001). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Cassis, R., Tapia, R. & Valderrama, J. A. (1985). Synth. Commun.15, 125–133.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Ruchelman, A. L., Singh, S. K., Ray, A., Wu, X. H., Yang, J. M., Li, T. K., Liu, A., Liu, L. F. & LaVoie, E. J. (2003). Bioorg. Med. Chem.11, 2061–2073. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033984/ez2178sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033984/ez2178Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

