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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Aug 29;65(Pt 9):o2282. doi: 10.1107/S160053680903400X

N′-(3-Bromo-4-methoxy­benzyl­idene)nicotinohydrazide monohydrate

Feng-Yu Bao a,*, Xing-Shun Ding b, Hai-Yan Zhang a, Ying-Xia Zhou a
PMCID: PMC2969945  PMID: 21577675

Abstract

In the title compound, C14H12BrN3O2·H2O, the benzene ring is oriented at a dihedral angle of 39.66 (11)° with respect to the pyridine ring. The solvent water mol­ecule links with the organic compound via O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonding.

Related literature

For applications of Schiff base compounds, see: Kahwa et al. (1986); Santos et al. (2001).graphic file with name e-65-o2282-scheme1.jpg

Experimental

Crystal data

  • C14H12BrN3O2·H2O

  • M r = 352.18

  • Monoclinic, Inline graphic

  • a = 7.7979 (1) Å

  • b = 12.5678 (2) Å

  • c = 14.9419 (3) Å

  • β = 97.449 (1)°

  • V = 1451.98 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.85 mm−1

  • T = 296 K

  • 0.43 × 0.28 × 0.22 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1998) T min = 0.400, T max = 0.535

  • 12611 measured reflections

  • 3149 independent reflections

  • 2525 reflections with I > 2σ(I)

  • R int = 0.027

Refinement

  • R[F 2 > 2σ(F 2)] = 0.027

  • wR(F 2) = 0.069

  • S = 1.01

  • 3149 reflections

  • 198 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.41 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903400X/xu2597sup1.cif

e-65-o2282-sup1.cif (16.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680903400X/xu2597Isup2.hkl

e-65-o2282-Isup2.hkl (154.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2A⋯N3 0.85 (2) 2.05 (2) 2.886 (2) 168 (2)
O2—H2B⋯O1i 0.82 (3) 2.47 (3) 3.118 (2) 136 (2)
O2—H2B⋯N1i 0.82 (3) 2.43 (3) 3.197 (2) 156 (3)
N2—H2⋯O2ii 0.86 2.18 2.982 (2) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

The chemistry of Schiff bases has attracted a great deal of interest in recent years. These compounds play an important role in the development of various proteins and enzymes (Kahwa et al., 1986; Santos et al., 2001). As part of our interest in the coordination chemistry of Schiff bases, we have recently synthesized the title compound and report here its crystal structure.

The title molecule crystallizes in the E conformation, with the C8—N1—N2—C9 torsion angle of 170.02 (19)°. The molecular is non-planar, there is a dihedral angle of 39.66 (11)° between the benzene ring and the pyridine ring. In the crystal structure, the lattice water molecule links with the organic compound via O—H···O, O—H···N and N—H···O hydrogen bonding.

Experimental

Nicotinohydrazide (1 mmol, 0.137 g) was dissolved in ethanol (15 ml). The mixture was stirred for several min at 351 K, then 3-bromo-4-methoxybenzaldehyde (1 mmol, 0.215 g) in ethanol (8 mm l) was added dropwise and the mixture was refluxed for 2 h. The solid product was isolated and recrystallized from methanol, colourless single crystals were obtained after 3 d.

Refinement

H atoms of water molecule are located in a difference Fourier map and refined isotropically, with O—H and H···H distances restrained to 0.85 (1) and 1.37 (2) Å, respectively. Methyl H atoms were placed in calculated positions with C—H = 0.96 Å and refined with Uiso(H) = 1.5Ueq(C). Other H atoms were placed in calculated positions with C—H = 0.93 and N—H = 0.86 Å, and refined in riding mode with Uiso(H) = 1.2Ueq(C,N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level.

Crystal data

C14H12BrN3O2·H2O F(000) = 712
Mr = 352.18 Dx = 1.611 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4706 reflections
a = 7.7979 (1) Å θ = 3.1–27.0°
b = 12.5678 (2) Å µ = 2.85 mm1
c = 14.9419 (3) Å T = 296 K
β = 97.449 (1)° Block, colourless
V = 1451.98 (4) Å3 0.43 × 0.28 × 0.22 mm
Z = 4

Data collection

Bruker SMART CCD area-detector diffractometer 3149 independent reflections
Radiation source: fine-focus sealed tube 2525 reflections with I > 2σ(I)
graphite Rint = 0.027
ω scans θmax = 27.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 1998) h = −9→9
Tmin = 0.400, Tmax = 0.535 k = −16→16
12611 measured reflections l = −19→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0354P)2 + 0.4288P] where P = (Fo2 + 2Fc2)/3
3149 reflections (Δ/σ)max < 0.001
198 parameters Δρmax = 0.41 e Å3
2 restraints Δρmin = −0.29 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.38290 (3) 0.882695 (16) 0.139661 (15) 0.04825 (10)
O1 −0.0836 (2) 0.53946 (11) −0.37189 (9) 0.0481 (4)
N1 0.0118 (2) 0.66340 (13) −0.22564 (10) 0.0364 (4)
C2 0.2856 (2) 0.77093 (14) 0.06618 (12) 0.0319 (4)
C6 0.1504 (3) 0.70831 (15) −0.07779 (12) 0.0330 (4)
N2 −0.0635 (2) 0.70309 (13) −0.30777 (10) 0.0373 (4)
H2 −0.0792 0.7704 −0.3150 0.045*
C5 0.1501 (3) 0.60611 (15) −0.04249 (14) 0.0389 (5)
H5A 0.1064 0.5501 −0.0792 0.047*
O 0.3473 (2) 0.65767 (12) 0.19064 (9) 0.0467 (4)
N3 −0.2839 (3) 0.66239 (14) −0.61976 (11) 0.0445 (4)
C13 −0.3787 (3) 0.81441 (17) −0.54493 (14) 0.0416 (5)
H13A −0.4406 0.8779 −0.5484 0.050*
C1 0.2194 (3) 0.79090 (15) −0.02219 (12) 0.0344 (4)
H1A 0.2207 0.8598 −0.0448 0.041*
C14 −0.2933 (3) 0.78026 (16) −0.46379 (13) 0.0373 (4)
H14A −0.2956 0.8207 −0.4118 0.045*
C12 −0.3718 (3) 0.75404 (18) −0.62074 (13) 0.0438 (5)
H12A −0.4306 0.7777 −0.6752 0.053*
C11 −0.2044 (3) 0.62932 (16) −0.54085 (13) 0.0386 (5)
H11A −0.1453 0.5649 −0.5392 0.046*
C10 −0.2041 (2) 0.68508 (15) −0.46049 (12) 0.0313 (4)
C3 0.2824 (3) 0.66925 (15) 0.10238 (12) 0.0336 (4)
C4 0.2141 (3) 0.58670 (16) 0.04669 (13) 0.0386 (5)
H4A 0.2116 0.5180 0.0696 0.046*
C8 0.0758 (3) 0.73423 (16) −0.17017 (13) 0.0373 (4)
H8A 0.0751 0.8048 −0.1890 0.045*
C7 0.3529 (4) 0.55397 (18) 0.22835 (15) 0.0573 (7)
H7A 0.4014 0.5573 0.2907 0.086*
H7B 0.4233 0.5089 0.1962 0.086*
H7C 0.2379 0.5255 0.2237 0.086*
C9 −0.1121 (3) 0.63517 (15) −0.37660 (12) 0.0332 (4)
O2 −0.1669 (3) 0.57231 (13) −0.77890 (10) 0.0521 (4)
H2A −0.214 (3) 0.5932 (19) −0.7336 (13) 0.068 (9)*
H2B −0.110 (3) 0.519 (2) −0.7634 (19) 0.072 (9)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.06384 (18) 0.03325 (12) 0.04243 (13) −0.00024 (10) −0.01295 (10) −0.01048 (9)
O1 0.0686 (11) 0.0340 (8) 0.0379 (8) 0.0075 (7) −0.0074 (7) −0.0026 (6)
N1 0.0453 (10) 0.0359 (8) 0.0259 (8) 0.0031 (8) −0.0035 (7) 0.0004 (7)
C2 0.0353 (11) 0.0284 (9) 0.0298 (9) −0.0003 (8) −0.0036 (8) −0.0066 (7)
C6 0.0352 (11) 0.0358 (10) 0.0265 (9) 0.0022 (8) −0.0014 (8) −0.0018 (8)
N2 0.0513 (11) 0.0315 (8) 0.0260 (8) 0.0006 (7) −0.0065 (7) 0.0007 (6)
C5 0.0460 (13) 0.0336 (10) 0.0345 (10) −0.0031 (9) −0.0050 (9) −0.0054 (8)
O 0.0678 (11) 0.0386 (8) 0.0292 (7) 0.0033 (7) −0.0105 (7) 0.0033 (6)
N3 0.0600 (12) 0.0418 (10) 0.0293 (8) −0.0012 (9) −0.0031 (8) −0.0037 (7)
C13 0.0437 (13) 0.0374 (10) 0.0419 (11) 0.0047 (9) −0.0008 (9) 0.0031 (9)
C1 0.0391 (12) 0.0299 (9) 0.0323 (9) 0.0027 (8) −0.0020 (8) 0.0009 (8)
C14 0.0414 (12) 0.0377 (10) 0.0322 (10) −0.0007 (9) 0.0021 (8) −0.0052 (8)
C12 0.0507 (14) 0.0457 (12) 0.0318 (10) −0.0048 (10) −0.0074 (9) 0.0049 (9)
C11 0.0499 (13) 0.0342 (10) 0.0300 (10) −0.0010 (9) −0.0011 (9) −0.0027 (8)
C10 0.0328 (11) 0.0329 (9) 0.0270 (9) −0.0053 (8) −0.0003 (8) −0.0013 (7)
C3 0.0371 (11) 0.0350 (10) 0.0270 (9) 0.0045 (9) −0.0022 (8) 0.0004 (8)
C4 0.0500 (13) 0.0282 (9) 0.0353 (10) −0.0017 (9) −0.0028 (9) 0.0032 (8)
C8 0.0429 (12) 0.0372 (10) 0.0299 (9) 0.0001 (9) −0.0020 (8) 0.0005 (8)
C7 0.0838 (19) 0.0451 (13) 0.0387 (12) 0.0038 (12) −0.0086 (11) 0.0144 (10)
C9 0.0384 (11) 0.0335 (10) 0.0270 (9) −0.0006 (8) 0.0016 (8) −0.0018 (7)
O2 0.0845 (13) 0.0375 (8) 0.0337 (8) 0.0076 (9) 0.0059 (8) 0.0042 (7)

Geometric parameters (Å, °)

Br1—C2 1.8810 (17) C13—C14 1.374 (3)
O1—C9 1.224 (2) C13—H13A 0.9300
N1—C8 1.273 (2) C1—H1A 0.9300
N1—N2 1.383 (2) C14—C10 1.382 (3)
C2—C1 1.377 (2) C14—H14A 0.9300
C2—C3 1.389 (3) C12—H12A 0.9300
C6—C5 1.389 (3) C11—C10 1.390 (3)
C6—C1 1.393 (3) C11—H11A 0.9300
C6—C8 1.463 (3) C10—C9 1.499 (3)
N2—C9 1.352 (2) C3—C4 1.392 (3)
N2—H2 0.8600 C4—H4A 0.9300
C5—C4 1.383 (3) C8—H8A 0.9300
C5—H5A 0.9300 C7—H7A 0.9600
O—C3 1.358 (2) C7—H7B 0.9600
O—C7 1.418 (3) C7—H7C 0.9600
N3—C11 1.326 (3) O2—H2A 0.85 (2)
N3—C12 1.340 (3) O2—H2B 0.82 (3)
C13—C12 1.370 (3)
C8—N1—N2 114.26 (16) C13—C12—H12A 118.6
C1—C2—C3 121.17 (17) N3—C11—C10 123.96 (19)
C1—C2—Br1 119.76 (14) N3—C11—H11A 118.0
C3—C2—Br1 119.07 (13) C10—C11—H11A 118.0
C5—C6—C1 118.83 (17) C14—C10—C11 117.46 (18)
C5—C6—C8 122.96 (17) C14—C10—C9 125.20 (17)
C1—C6—C8 118.18 (17) C11—C10—C9 117.30 (17)
C9—N2—N1 119.48 (16) O—C3—C2 116.98 (17)
C9—N2—H2 120.3 O—C3—C4 124.49 (17)
N1—N2—H2 120.3 C2—C3—C4 118.54 (17)
C4—C5—C6 120.74 (18) C5—C4—C3 120.46 (18)
C4—C5—H5A 119.6 C5—C4—H4A 119.8
C6—C5—H5A 119.6 C3—C4—H4A 119.8
C3—O—C7 118.23 (16) N1—C8—C6 122.20 (18)
C11—N3—C12 117.32 (17) N1—C8—H8A 118.9
C12—C13—C14 119.3 (2) C6—C8—H8A 118.9
C12—C13—H13A 120.3 O—C7—H7A 109.5
C14—C13—H13A 120.3 O—C7—H7B 109.5
C2—C1—C6 120.25 (17) H7A—C7—H7B 109.5
C2—C1—H1A 119.9 O—C7—H7C 109.5
C6—C1—H1A 119.9 H7A—C7—H7C 109.5
C13—C14—C10 119.09 (19) H7B—C7—H7C 109.5
C13—C14—H14A 120.5 O1—C9—N2 123.08 (18)
C10—C14—H14A 120.5 O1—C9—C10 121.55 (17)
N3—C12—C13 122.83 (19) N2—C9—C10 115.38 (16)
N3—C12—H12A 118.6 H2A—O2—H2B 107 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2—H2A···N3 0.85 (2) 2.05 (2) 2.886 (2) 168 (2)
O2—H2B···O1i 0.82 (3) 2.47 (3) 3.118 (2) 136 (2)
O2—H2B···N1i 0.82 (3) 2.43 (3) 3.197 (2) 156 (3)
N2—H2···O2ii 0.86 2.18 2.982 (2) 155

Symmetry codes: (i) −x, −y+1, −z−1; (ii) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU2597).

References

  1. Bruker (1998). SMART, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Kahwa, I. A., Selbin, I., Hsieh, T. C. Y. & Laine, R. A. (1986). Inorg. Chim. Acta, 118, 179–185.
  3. Santos, M. L. P., Bagatin, I. A., Pereira, E. M. & Ferreira, A. M. D. C. (2001). J. Chem. Soc. Dalton Trans pp. 838–844.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903400X/xu2597sup1.cif

e-65-o2282-sup1.cif (16.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680903400X/xu2597Isup2.hkl

e-65-o2282-Isup2.hkl (154.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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