Abstract
In the title compound, C15H13N5, the dihedral angles between the central aromatic ring and and the two peripheral rings are 1.5 (6) and 33.1 (4)°. In the crystal, intermolecular N—H⋯N hydrogen bonds connect the molecules into a zigzag chain propagating in [100].
Related literature
For a related structure, see: Huang et al. (2004 ▶). For background to metal-organic framework complexes with polypyridylamine ligands, see: Peng et al. (2000 ▶); Fang et al. (2005 ▶).
Experimental
Crystal data
C15H13N5
M r = 263.30
Orthorhombic,
a = 11.4884 (15) Å
b = 7.3445 (10) Å
c = 30.718 (4) Å
V = 2591.9 (6) Å3
Z = 8
Mo Kα radiation
μ = 0.09 mm−1
T = 298 K
0.19 × 0.15 × 0.11 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.984, T max = 0.991
11972 measured reflections
2304 independent reflections
1529 reflections with I > 2σ(I)
R int = 0.053
Refinement
R[F 2 > 2σ(F 2)] = 0.050
wR(F 2) = 0.187
S = 0.82
2304 reflections
182 parameters
1 restraint
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.15 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033480/hb5059sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033480/hb5059Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N4—H4A⋯N1i | 0.86 | 2.22 | 3.038 (3) | 160 |
| N2—H2A⋯N3ii | 0.86 | 2.35 | 3.198 (3) | 170 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors are grateful to Zhejiang Shuren University for financial support.
supplementary crystallographic information
Comment
Metal-organic frameworks complexes with polypyridylamine ligands, bearing diverse networks and special optical and electromagnetic properties (Peng et al., 2000), have aroused great interest among researchers. Tri-pyridyldiamine ligand usually exhibits donor as well as acceptor properties and can be used as a popular chelating ligand (Fang et al., 2005). The crystals of the title compound were obatined unintentionally as the harvested product of the mild reaction of N2-(pydidin-2-yl)-N6-(pydidin-4-yl)pyridine-2,6-diamine, zinc salt.
The molecular structure of the title compound is shown in Fig. 1. In the crystal structure, intermoelcular N-H···N hydorgen bonds connect molecules into one-dimensional chain along a axis (Table 1), as shown in Figure 2. The three pyridine rings of the title compound are not coplanar. The dihedral angles between the planes of the central pyridine ring and two peripheral rings are 1.5 (6) and 146.9 (4)° respectively, which is very different from the Cd complex with [2,6-bis(2-pyridylamino)pyridine] [15.6 (5) and 34.1 (3)°] (Huang et al., 2004).
Experimental
N2-(pydidin-2-yl)-N6-(pydidin-4-yl)pyridine-2,6-diamine (0.27 mg,0.1 mmol), Zn(CH3COO)2 (0.43 mg, 0.1 mmol), were added to dry ethanol. The mixture was heated and stirred for six hours under reflux. The resultant was then filtered off to give a pure solution which was treated by diethyl ether in a closed vessel. Two weeks later, colourless blocks of (I) were obtained.
Refinement
The H atoms were positioned geometrically and treated as riding on their parent atoms, with C—H distances of 0.93Å (pyridine ring), N—H = 0.86 Å (amine group), and with Uiso(H) 1.2Ueq(carrier).
Figures
Fig. 1.
The molecular structure of (I) Ellipsoids are drawn at the the 30% probability level. H atoms are shown as spheres of arbitrary radius.
Fig. 2.
Partial packing of (I) view showing the formation of a chain through N-H···N hydrogen bonds. Hydrogen bonds are shown as dashed lines.
Crystal data
| C15H13N5 | F(000) = 1104 |
| Mr = 263.30 | Dx = 1.350 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 2304 reflections |
| a = 11.4884 (15) Å | θ = 2.2–25.2° |
| b = 7.3445 (10) Å | µ = 0.09 mm−1 |
| c = 30.718 (4) Å | T = 298 K |
| V = 2591.9 (6) Å3 | Block, colourless |
| Z = 8 | 0.19 × 0.15 × 0.11 mm |
Data collection
| Bruker APEXII CCD diffractometer | 2304 independent reflections |
| Radiation source: fine-focus sealed tube | 1529 reflections with I > 2σ(I) |
| graphite | Rint = 0.053 |
| φ and ω scans | θmax = 25.2°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −13→11 |
| Tmin = 0.984, Tmax = 0.991 | k = −8→8 |
| 11972 measured reflections | l = −34→36 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
| wR(F2) = 0.187 | w = 1/[σ2(Fo2) + (0.158P)2 + 0.03P] where P = (Fo2 + 2Fc2)/3 |
| S = 0.82 | (Δ/σ)max < 0.001 |
| 2304 reflections | Δρmax = 0.23 e Å−3 |
| 182 parameters | Δρmin = −0.15 e Å−3 |
| 1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.011 (2) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N3 | 0.09096 (15) | 1.0142 (2) | 0.36725 (5) | 0.0482 (5) | |
| C11 | −0.05825 (17) | 0.6096 (3) | 0.40354 (7) | 0.0485 (6) | |
| N5 | −0.06267 (16) | 0.6024 (3) | 0.44682 (6) | 0.0573 (6) | |
| N2 | 0.18582 (17) | 1.2747 (2) | 0.34296 (6) | 0.0586 (6) | |
| H2A | 0.2400 | 1.3509 | 0.3493 | 0.070* | |
| C1 | 0.0235 (2) | 1.1978 (3) | 0.24144 (7) | 0.0544 (6) | |
| H1 | −0.0457 | 1.1441 | 0.2324 | 0.065* | |
| C9 | 0.06292 (18) | 0.9532 (3) | 0.44324 (7) | 0.0520 (6) | |
| H9 | 0.0349 | 0.8779 | 0.4652 | 0.062* | |
| C6 | 0.14379 (19) | 1.1700 (3) | 0.37742 (7) | 0.0482 (6) | |
| C5 | 0.15115 (19) | 1.2712 (3) | 0.29979 (7) | 0.0476 (6) | |
| C4 | 0.22262 (19) | 1.3511 (3) | 0.26852 (8) | 0.0557 (6) | |
| H4 | 0.2920 | 1.4068 | 0.2766 | 0.067* | |
| N4 | −0.00874 (17) | 0.7580 (2) | 0.38310 (6) | 0.0553 (6) | |
| H4A | −0.0140 | 0.7558 | 0.3552 | 0.066* | |
| C2 | 0.04739 (18) | 1.1955 (3) | 0.28529 (7) | 0.0499 (6) | |
| H2 | −0.0049 | 1.1443 | 0.3049 | 0.060* | |
| N1 | 0.09143 (19) | 1.2706 (3) | 0.21080 (6) | 0.0623 (6) | |
| C7 | 0.1620 (2) | 1.2251 (3) | 0.42019 (7) | 0.0570 (7) | |
| H7 | 0.2001 | 1.3335 | 0.4266 | 0.068* | |
| C10 | 0.04771 (17) | 0.9094 (3) | 0.39941 (7) | 0.0450 (5) | |
| C8 | 0.1212 (2) | 1.1128 (3) | 0.45271 (7) | 0.0595 (7) | |
| H8 | 0.1332 | 1.1451 | 0.4816 | 0.071* | |
| C12 | −0.1031 (2) | 0.4715 (3) | 0.37727 (8) | 0.0612 (6) | |
| H12 | −0.0978 | 0.4792 | 0.3471 | 0.073* | |
| C3 | 0.1897 (2) | 1.3467 (3) | 0.22582 (8) | 0.0638 (7) | |
| H3 | 0.2391 | 1.4007 | 0.2056 | 0.077* | |
| C15 | −0.1133 (2) | 0.4549 (4) | 0.46451 (9) | 0.0694 (8) | |
| H15 | −0.1165 | 0.4479 | 0.4947 | 0.083* | |
| C14 | −0.1602 (2) | 0.3157 (4) | 0.44141 (10) | 0.0759 (8) | |
| H14 | −0.1947 | 0.2172 | 0.4554 | 0.091* | |
| C13 | −0.1552 (2) | 0.3242 (4) | 0.39659 (10) | 0.0737 (8) | |
| H13 | −0.1867 | 0.2313 | 0.3797 | 0.088* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N3 | 0.0552 (11) | 0.0459 (11) | 0.0436 (10) | −0.0016 (8) | −0.0036 (8) | −0.0010 (8) |
| C11 | 0.0482 (12) | 0.0477 (13) | 0.0495 (13) | 0.0023 (10) | −0.0020 (9) | 0.0048 (10) |
| N5 | 0.0608 (12) | 0.0589 (13) | 0.0521 (12) | −0.0004 (10) | 0.0003 (9) | 0.0112 (9) |
| N2 | 0.0616 (12) | 0.0579 (12) | 0.0561 (12) | −0.0192 (9) | −0.0075 (9) | 0.0004 (9) |
| C1 | 0.0567 (13) | 0.0496 (13) | 0.0571 (15) | −0.0028 (11) | −0.0072 (11) | 0.0020 (10) |
| C9 | 0.0560 (13) | 0.0574 (14) | 0.0426 (12) | 0.0005 (11) | 0.0012 (10) | −0.0015 (10) |
| C6 | 0.0480 (12) | 0.0466 (12) | 0.0500 (13) | 0.0002 (10) | −0.0023 (9) | −0.0022 (10) |
| C5 | 0.0552 (13) | 0.0387 (11) | 0.0488 (13) | 0.0003 (9) | −0.0001 (10) | −0.0028 (9) |
| C4 | 0.0539 (13) | 0.0468 (13) | 0.0664 (16) | −0.0066 (10) | 0.0032 (11) | 0.0029 (10) |
| N4 | 0.0754 (14) | 0.0498 (12) | 0.0408 (10) | −0.0103 (10) | −0.0013 (8) | 0.0004 (7) |
| C2 | 0.0501 (13) | 0.0484 (12) | 0.0513 (13) | −0.0029 (10) | 0.0002 (10) | 0.0033 (10) |
| N1 | 0.0756 (13) | 0.0584 (13) | 0.0530 (12) | 0.0035 (10) | 0.0027 (10) | 0.0051 (9) |
| C7 | 0.0561 (14) | 0.0582 (15) | 0.0568 (15) | −0.0068 (11) | −0.0035 (11) | −0.0111 (11) |
| C10 | 0.0455 (12) | 0.0447 (12) | 0.0449 (12) | 0.0029 (9) | 0.0004 (9) | −0.0003 (9) |
| C8 | 0.0621 (15) | 0.0700 (17) | 0.0465 (13) | −0.0007 (13) | −0.0007 (10) | −0.0125 (11) |
| C12 | 0.0626 (15) | 0.0582 (15) | 0.0628 (14) | −0.0089 (12) | −0.0073 (11) | −0.0010 (12) |
| C3 | 0.0725 (15) | 0.0593 (16) | 0.0596 (15) | 0.0017 (12) | 0.0130 (12) | 0.0081 (11) |
| C15 | 0.0624 (16) | 0.0743 (18) | 0.0715 (17) | −0.0059 (14) | 0.0016 (12) | 0.0216 (14) |
| C14 | 0.0604 (16) | 0.0711 (18) | 0.096 (2) | −0.0107 (14) | −0.0013 (14) | 0.0256 (16) |
| C13 | 0.0691 (17) | 0.0592 (16) | 0.093 (2) | −0.0180 (13) | −0.0082 (15) | 0.0030 (14) |
Geometric parameters (Å, °)
| N3—C6 | 1.332 (3) | C4—C3 | 1.366 (3) |
| N3—C10 | 1.347 (3) | C4—H4 | 0.9300 |
| C11—N5 | 1.331 (3) | N4—C10 | 1.381 (2) |
| C11—N4 | 1.380 (3) | N4—H4A | 0.8600 |
| C11—C12 | 1.395 (3) | C2—H2 | 0.9300 |
| N5—C15 | 1.344 (3) | N1—C3 | 1.341 (3) |
| N2—C5 | 1.385 (3) | C7—C8 | 1.378 (3) |
| N2—C6 | 1.394 (3) | C7—H7 | 0.9300 |
| N2—H2A | 0.8600 | C8—H8 | 0.9300 |
| C1—N1 | 1.335 (3) | C12—C13 | 1.371 (3) |
| C1—C2 | 1.375 (3) | C12—H12 | 0.9300 |
| C1—H1 | 0.9300 | C3—H3 | 0.9300 |
| C9—C8 | 1.381 (3) | C15—C14 | 1.356 (4) |
| C9—C10 | 1.395 (3) | C15—H15 | 0.9300 |
| C9—H9 | 0.9300 | C14—C13 | 1.379 (4) |
| C6—C7 | 1.390 (3) | C14—H14 | 0.9300 |
| C5—C2 | 1.388 (3) | C13—H13 | 0.9300 |
| C5—C4 | 1.393 (3) | ||
| C6—N3—C10 | 119.13 (18) | C1—C2—H2 | 120.6 |
| N5—C11—N4 | 120.07 (19) | C5—C2—H2 | 120.6 |
| N5—C11—C12 | 122.3 (2) | C1—N1—C3 | 114.6 (2) |
| N4—C11—C12 | 117.6 (2) | C8—C7—C6 | 117.4 (2) |
| C11—N5—C15 | 116.9 (2) | C8—C7—H7 | 121.3 |
| C5—N2—C6 | 128.11 (18) | C6—C7—H7 | 121.3 |
| C5—N2—H2A | 115.9 | N3—C10—N4 | 111.54 (17) |
| C6—N2—H2A | 115.9 | N3—C10—C9 | 121.97 (19) |
| N1—C1—C2 | 125.4 (2) | N4—C10—C9 | 126.5 (2) |
| N1—C1—H1 | 117.3 | C7—C8—C9 | 121.3 (2) |
| C2—C1—H1 | 117.3 | C7—C8—H8 | 119.3 |
| C8—C9—C10 | 117.4 (2) | C9—C8—H8 | 119.3 |
| C8—C9—H9 | 121.3 | C13—C12—C11 | 119.0 (2) |
| C10—C9—H9 | 121.3 | C13—C12—H12 | 120.5 |
| N3—C6—C7 | 122.7 (2) | C11—C12—H12 | 120.5 |
| N3—C6—N2 | 116.95 (19) | N1—C3—C4 | 125.0 (2) |
| C7—C6—N2 | 120.3 (2) | N1—C3—H3 | 117.5 |
| N2—C5—C2 | 124.1 (2) | C4—C3—H3 | 117.5 |
| N2—C5—C4 | 118.9 (2) | N5—C15—C14 | 124.6 (3) |
| C2—C5—C4 | 117.0 (2) | N5—C15—H15 | 117.7 |
| C3—C4—C5 | 119.3 (2) | C14—C15—H15 | 117.7 |
| C3—C4—H4 | 120.4 | C15—C14—C13 | 118.2 (2) |
| C5—C4—H4 | 120.4 | C15—C14—H14 | 120.9 |
| C11—N4—C10 | 131.6 (2) | C13—C14—H14 | 120.9 |
| C11—N4—H4A | 114.2 | C12—C13—C14 | 119.1 (3) |
| C10—N4—H4A | 114.2 | C12—C13—H13 | 120.5 |
| C1—C2—C5 | 118.7 (2) | C14—C13—H13 | 120.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N4—H4A···N1i | 0.86 | 2.22 | 3.038 (3) | 160 |
| N2—H2A···N3ii | 0.86 | 2.35 | 3.198 (3) | 170 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x+1/2, y+1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5059).
References
- Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc, Madison, Wisconsin, USA.
- Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA.
- Fang, X.-N., Li, X.-F. & Zeng, X.-R. (2005). Acta Cryst. E61, m1123–m1125.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Huang, L., Tang, S.-H., Fang, X.-N. & Zeng, X.-R. (2004). Acta Cryst. E60, m1963–m1965.
- Peng, S.-M., Wang, C.-C., Jang, Y.-L., Chen, Y.-H., Li, F.-Y., Mou, C.-Y. & Leung, M.-K. (2000). J. Magn. Mater.209, 80–83.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033480/hb5059sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033480/hb5059Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


