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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Aug 19;65(Pt 9):o2184. doi: 10.1107/S1600536809032206

N,N′-Bis(1-acetyl­cyclo­hexyl)-1,8:4,5-naphthalene­tetra­carboximide

Chenaimwoyo A Gondo a, Daniel E Lynch b, Darren G Hamilton a,*
PMCID: PMC2970056  PMID: 21577588

Abstract

The title compound, C30H30N2O6, has crystallographic inversion symmetry with the nitro­gen atom and the two oxygen atoms of the naphthalene diimide system deviating by −0.243 (2), 0.109 (3) and 0.247 (2) Å, respectively, from the plane defined by the carbon atoms.

Related literature

For the structure of a related benzene diimide derivative with terminal acetyl­ene groups, see: Gondo et al. (2009). For preparative procedures for compounds of this type and for the title compound, see Hamilton et al. (1998, 1999); Raehm et al. (2002); Ahn et al. (1997).graphic file with name e-65-o2184-scheme1.jpg

Experimental

Crystal data

  • C30H30N2O6

  • M r = 514.56

  • Monoclinic, Inline graphic

  • a = 5.8553 (2) Å

  • b = 13.6603 (6) Å

  • c = 15.2820 (6) Å

  • β = 94.001 (2)°

  • V = 1219.35 (8) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 120 K

  • 0.20 × 0.18 × 0.06 mm

Data collection

  • Bruker–Nonius 95 mm CCD camera on κ-goniostat diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003) T min = 0.981, T max = 0.994

  • 11932 measured reflections

  • 2397 independent reflections

  • 1949 reflections with I > 2σ(I)

  • R int = 0.049

Refinement

  • R[F 2 > 2σ(F 2)] = 0.063

  • wR(F 2) = 0.150

  • S = 1.17

  • 2397 reflections

  • 174 parameters

  • H-atom parameters constrained

  • Δρmax = 0.60 e Å−3

  • Δρmin = −0.59 e Å−3

Data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032206/zs2005sup1.cif

e-65-o2184-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032206/zs2005Isup2.hkl

e-65-o2184-Isup2.hkl (117.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

We thank the National Science Foundation (Award 0314514), the Camille and Henry Dreyfus Foundation (Henry Dreyfus Teacher Scholar Award to DGH, 2005–2010), and the EPSRC National Crystallography Service (University of Southampton, UK) for their support of this work.

supplementary crystallographic information

Comment

In a previous paper we presented the structure of a benzene diimide derivative having terminal acetylene groups and solubilizing cyclohexyl substituents (Gondo et al., 2009). This material was prepared for use in oxidative coupling reactions, thereby forming macrocycles as either isolated entities (Hamilton et al., 1999), or as components of molecularly interlocked systems (Hamilton et al., 1998; Raehm et al., 2002). As the corresponding naphthalene diimide analogues of benzene diimide derivatives are known to be generally more powerful electron acceptors, and have therefore been deployed in a variety of supramolecular and materials chemistry contexts, we attempted the preparation of the corresponding naphthalene diimide. However, under all of the standard conditions generally employed in the synthesis of benzene and naphthalene diimides we failed to obtain the desired compound. Only under rather forcing conditions was evidence of ring closure to the imide obtained, but under these conditions adventitious water was also found to have added to the acetylene groups (Ahn et al., 1997). Thus, a low yield of the diketone was the only isolable material obtained from this process and the structure of this compound (I) is reported here.

The title compound has crystallographic inversion symmetry (Fig. 1), (symmetry code: a -x + 1, -y + 1, -z + 1). The nitrogen and the two oxygen atoms of the naphthalene diimide systems deviate by -0.243 (2), 0.109 (3) and 0.247 (2) Å respectively from the plane defined by the carbon atoms.

Experimental

Under standard conditions for aromatic diimide formation (Hamilton et al., 1998; Hamilton et al., 1999) no evidence for the production of the desired acetylenic diimide could be found. Ring closure accompanied by unwanted addition of water across the acetylene bonds was observed using an alternative protocol (Ahn et al., 1997), giving a very low yield (<5%) of diketone (I) after chromatographic isolation. Single crystals of suitable quality for structure determination were grown by vapor diffusion of water into a DMF solution of the title compound.

Refinement

All H atoms were included in the refinement at calculated positions, in the riding-model approximation, with C–H distances of 0.95 (ArH), 0.98 (CH3) and 0.99Å (CH2). The isotropic displacement parameters for all H atoms were set equal to 1.25Ueq of the carrier atom. A large residual electron density (0.60 eÅ-3) is located 0.57Å from H4.

Figures

Fig. 1.

Fig. 1.

Molecular configuration and atom-numbering scheme for (I) which has inversion symetry (symmetry code: a -x + 1, -y + 1, -z + 1). Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C30H30N2O6 F(000) = 544
Mr = 514.56 Dx = 1.401 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2881 reflections
a = 5.8553 (2) Å θ = 2.9–27.5°
b = 13.6603 (6) Å µ = 0.10 mm1
c = 15.2820 (6) Å T = 120 K
β = 94.001 (2)° Plate, orange
V = 1219.35 (8) Å3 0.20 × 0.18 × 0.06 mm
Z = 2

Data collection

Bruker–Nonius 95 mm CCD camera on κ-goniostat diffractometer 2397 independent reflections
Radiation source: Bruker Nonius FR591 rotating anode 1949 reflections with I > 2σ(I)
10 cm confocal mirrors Rint = 0.049
Detector resolution: 9.091 pixels mm-1 θmax = 26.0°, θmin = 3.1°
φ and ω scans h = −7→7
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) k = −16→16
Tmin = 0.981, Tmax = 0.994 l = −18→16
11932 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063 H-atom parameters constrained
wR(F2) = 0.150 w = 1/[σ2(Fo2) + (0.0786P)2 + 0.2672P] where P = (Fo2 + 2Fc2)/3
S = 1.17 (Δ/σ)max < 0.001
2397 reflections Δρmax = 0.60 e Å3
174 parameters Δρmin = −0.59 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.094 (8)

Special details

Experimental. The minimum and maximum absorption values stated above are those calculated in SHELXL97 from the given crystal dimensions. The ratio of minimum to maximum apparent transmission was determined experimentally as 0.770335.
Geometry. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) 3.5634 (0.0035) x - 0.8935 (0.0092) y + 11.4066 (0.0079) z = 7.0465 (0.0048) * -0.0167 (0.0010) C2 * 0.0088 (0.0016) C3 * -0.0098 (0.0013) C4 * -0.0071 (0.0012) C5 * 0.0161 (0.0011) C6 * 0.0087 (0.0011) C7 - 0.0027 (0.0028) C8 - 0.2429 (0.0022) N1 0.1089 (0.0026) O1 0.2471 (0.0023) O2 Rms deviation of fitted atoms = 0.0118

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.9857 (2) 0.37034 (9) 0.34838 (9) 0.0236 (4)
O2 0.4959 (2) 0.19444 (9) 0.49973 (9) 0.0223 (4)
O3 1.0165 (2) 0.19678 (10) 0.23338 (9) 0.0266 (4)
N1 0.6940 (3) 0.28341 (11) 0.40186 (10) 0.0170 (4)
C2 0.8167 (3) 0.37028 (13) 0.39014 (12) 0.0181 (4)
C3 0.7265 (3) 0.46151 (13) 0.42772 (11) 0.0173 (4)
C4 0.5438 (3) 0.45653 (13) 0.48277 (11) 0.0164 (4)
C5 0.4497 (3) 0.36554 (13) 0.50527 (12) 0.0171 (4)
C6 0.5449 (3) 0.27368 (13) 0.47037 (12) 0.0177 (4)
C7 0.8165 (3) 0.55098 (13) 0.40659 (12) 0.0190 (4)
H1 0.9401 0.5540 0.3695 0.024*
C8 0.2735 (3) 0.36217 (13) 0.56043 (12) 0.0190 (4)
H2 0.2125 0.3007 0.5763 0.024*
C9 0.7659 (3) 0.19434 (13) 0.35194 (12) 0.0173 (4)
C10 0.8453 (3) 0.22945 (13) 0.26254 (12) 0.0204 (5)
C11 0.6832 (4) 0.29318 (15) 0.20654 (13) 0.0273 (5)
H3 0.7698 0.3451 0.1795 0.034*
H4 0.5707 0.3226 0.2432 0.034*
H5 0.6039 0.2533 0.1606 0.034*
C12 0.9518 (3) 0.13813 (13) 0.40723 (13) 0.0210 (5)
H6 0.9015 0.1301 0.4673 0.026*
H7 1.0936 0.1778 0.4115 0.026*
C13 1.0070 (3) 0.03672 (14) 0.37068 (14) 0.0245 (5)
H8 1.0946 0.0450 0.3180 0.031*
H9 1.1052 0.0007 0.4151 0.031*
C14 0.7927 (3) −0.02394 (15) 0.34620 (15) 0.0278 (5)
H10 0.8365 −0.0859 0.3182 0.035*
H11 0.7153 −0.0404 0.3999 0.035*
C15 0.6295 (3) 0.03341 (14) 0.28330 (13) 0.0234 (5)
H12 0.4928 −0.0069 0.2668 0.029*
H13 0.7062 0.0489 0.2292 0.029*
C16 0.5565 (3) 0.12816 (13) 0.32632 (13) 0.0202 (5)
H14 0.4763 0.1124 0.3795 0.025*
H15 0.4483 0.1640 0.2852 0.025*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0219 (7) 0.0232 (7) 0.0269 (8) −0.0025 (5) 0.0105 (6) −0.0044 (6)
O2 0.0292 (8) 0.0171 (7) 0.0213 (7) −0.0026 (6) 0.0057 (6) 0.0012 (5)
O3 0.0294 (8) 0.0235 (7) 0.0284 (8) 0.0017 (6) 0.0124 (6) −0.0047 (6)
N1 0.0176 (8) 0.0171 (8) 0.0166 (8) 0.0003 (6) 0.0036 (6) −0.0009 (6)
C2 0.0186 (9) 0.0210 (10) 0.0146 (9) −0.0016 (7) 0.0007 (7) −0.0005 (7)
C3 0.0182 (9) 0.0209 (10) 0.0125 (9) −0.0015 (7) −0.0003 (7) −0.0020 (7)
C4 0.0149 (9) 0.0206 (10) 0.0132 (9) −0.0001 (7) −0.0016 (7) −0.0001 (7)
C5 0.0184 (9) 0.0185 (10) 0.0140 (9) −0.0003 (7) −0.0013 (7) −0.0001 (7)
C6 0.0178 (9) 0.0204 (10) 0.0147 (9) −0.0015 (8) −0.0003 (7) −0.0010 (7)
C7 0.0197 (9) 0.0223 (10) 0.0153 (9) −0.0015 (8) 0.0042 (7) 0.0004 (7)
C8 0.0218 (10) 0.0194 (9) 0.0160 (10) −0.0039 (8) 0.0024 (7) 0.0016 (7)
C9 0.0163 (9) 0.0167 (9) 0.0192 (10) 0.0011 (7) 0.0032 (7) −0.0016 (7)
C10 0.0240 (10) 0.0152 (9) 0.0223 (10) −0.0024 (8) 0.0032 (8) −0.0051 (7)
C11 0.0334 (12) 0.0279 (11) 0.0202 (10) −0.0019 (9) −0.0006 (9) 0.0019 (8)
C12 0.0189 (10) 0.0208 (10) 0.0232 (10) 0.0003 (8) 0.0007 (8) 0.0005 (8)
C13 0.0209 (10) 0.0213 (10) 0.0312 (11) 0.0041 (8) 0.0017 (8) 0.0028 (8)
C14 0.0257 (11) 0.0188 (10) 0.0397 (12) 0.0005 (8) 0.0074 (9) −0.0013 (9)
C15 0.0212 (10) 0.0214 (10) 0.0280 (11) −0.0043 (8) 0.0042 (8) −0.0057 (8)
C16 0.0174 (9) 0.0210 (10) 0.0221 (10) −0.0008 (8) 0.0013 (7) −0.0020 (8)

Geometric parameters (Å, °)

O1—C2 1.214 (2) C9—C16 1.552 (3)
O2—C6 1.214 (2) C10—C11 1.509 (3)
O3—C10 1.210 (2) C11—H3 0.98
N1—C2 1.405 (2) C11—H4 0.98
N1—C6 1.415 (2) C11—H5 0.98
N1—C9 1.512 (2) C12—C13 1.537 (3)
C2—C3 1.485 (3) C12—H6 0.99
C3—C7 1.378 (3) C12—H7 0.99
C3—C4 1.408 (3) C13—C14 1.528 (3)
C4—C4i 1.410 (3) C13—H8 0.99
C4—C5 1.412 (3) C13—H9 0.99
C5—C8 1.378 (3) C14—C15 1.524 (3)
C5—C6 1.487 (3) C14—H10 0.99
C7—C8i 1.406 (3) C14—H11 0.99
C7—H1 0.95 C15—C16 1.526 (3)
C8—C7i 1.406 (3) C15—H12 0.99
C8—H2 0.95 C15—H13 0.99
C9—C12 1.536 (3) C16—H14 0.99
C9—C10 1.550 (3) C16—H15 0.99
C2—N1—C6 121.39 (15) H3—C11—H4 109.5
C2—N1—C9 116.90 (14) C10—C11—H5 109.5
C6—N1—C9 120.37 (14) H3—C11—H5 109.5
O1—C2—N1 120.69 (16) H4—C11—H5 109.5
O1—C2—C3 121.85 (16) C9—C12—C13 114.19 (16)
N1—C2—C3 117.42 (16) C9—C12—H6 108.7
C7—C3—C4 120.12 (16) C13—C12—H6 108.7
C7—C3—C2 120.09 (16) C9—C12—H7 108.7
C4—C3—C2 119.76 (16) C13—C12—H7 108.7
C3—C4—C4i 119.6 (2) H6—C12—H7 107.6
C3—C4—C5 120.91 (16) C14—C13—C12 112.81 (16)
C4i—C4—C5 119.5 (2) C14—C13—H8 109.0
C8—C5—C4 120.00 (16) C12—C13—H8 109.0
C8—C5—C6 120.44 (16) C14—C13—H9 109.0
C4—C5—C6 119.55 (16) C12—C13—H9 109.0
O2—C6—N1 122.08 (16) H8—C13—H9 107.8
O2—C6—C5 121.05 (16) C15—C14—C13 110.10 (16)
N1—C6—C5 116.87 (15) C15—C14—H10 109.6
C3—C7—C8i 120.33 (17) C13—C14—H10 109.6
C3—C7—H1 119.8 C15—C14—H11 109.6
C8i—C7—H1 119.8 C13—C14—H11 109.6
C5—C8—C7i 120.45 (17) H10—C14—H11 108.2
C5—C8—H2 119.8 C14—C15—C16 110.27 (16)
C7i—C8—H2 119.8 C14—C15—H12 109.6
N1—C9—C12 109.66 (14) C16—C15—H12 109.6
N1—C9—C10 107.88 (14) C14—C15—H13 109.6
C12—C9—C10 113.28 (15) C16—C15—H13 109.6
N1—C9—C16 110.69 (14) H12—C15—H13 108.1
C12—C9—C16 111.39 (15) C15—C16—C9 111.25 (15)
C10—C9—C16 103.78 (15) C15—C16—H14 109.4
O3—C10—C11 120.53 (17) C9—C16—H14 109.4
O3—C10—C9 121.16 (17) C15—C16—H15 109.4
C11—C10—C9 117.60 (16) C9—C16—H15 109.4
C10—C11—H3 109.5 H14—C16—H15 108.0
C10—C11—H4 109.5
C6—N1—C2—O1 160.09 (17) C2—C3—C7—C8i 177.80 (17)
C9—N1—C2—O1 −6.8 (2) C4—C5—C8—C7i 1.1 (3)
C6—N1—C2—C3 −22.2 (2) C6—C5—C8—C7i −179.98 (17)
C9—N1—C2—C3 170.95 (15) C2—N1—C9—C12 89.38 (18)
O1—C2—C3—C7 8.2 (3) C6—N1—C9—C12 −77.62 (19)
N1—C2—C3—C7 −169.49 (17) C2—N1—C9—C10 −34.4 (2)
O1—C2—C3—C4 −173.83 (17) C6—N1—C9—C10 158.59 (15)
N1—C2—C3—C4 8.5 (2) C2—N1—C9—C16 −147.33 (16)
C7—C3—C4—C4i −1.0 (3) C6—N1—C9—C16 45.7 (2)
C2—C3—C4—C4i −179.01 (19) N1—C9—C10—O3 136.51 (17)
C7—C3—C4—C5 −179.86 (17) C12—C9—C10—O3 14.9 (2)
C2—C3—C4—C5 2.2 (3) C16—C9—C10—O3 −106.01 (19)
C3—C4—C5—C8 178.90 (16) N1—C9—C10—C11 −53.1 (2)
C4i—C4—C5—C8 0.1 (3) C12—C9—C10—C11 −174.65 (15)
C3—C4—C5—C6 0.0 (3) C16—C9—C10—C11 64.39 (19)
C4i—C4—C5—C6 −178.82 (19) N1—C9—C12—C13 169.46 (15)
C2—N1—C6—O2 −155.80 (17) C10—C9—C12—C13 −70.0 (2)
C9—N1—C6—O2 10.6 (3) C16—C9—C12—C13 46.6 (2)
C2—N1—C6—C5 24.2 (2) C9—C12—C13—C14 −48.2 (2)
C9—N1—C6—C5 −169.37 (15) C12—C13—C14—C15 54.2 (2)
C8—C5—C6—O2 −11.5 (3) C13—C14—C15—C16 −60.5 (2)
C4—C5—C6—O2 167.34 (17) C14—C15—C16—C9 60.2 (2)
C8—C5—C6—N1 168.43 (16) N1—C9—C16—C15 −174.79 (15)
C4—C5—C6—N1 −12.7 (2) C12—C9—C16—C15 −52.5 (2)
C4—C3—C7—C8i −0.2 (3) C10—C9—C16—C15 69.71 (18)

Symmetry codes: (i) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2005).

References

  1. Ahn, C., Campbell, R. F. & Feldman, K. S. (1997). Bull. Korean Chem. Soc.18, 441–442.
  2. Gondo, C. A., Lynch, D. E. & Hamilton, D. G. (2009). Acta Cryst. E65, o2122. [DOI] [PMC free article] [PubMed]
  3. Hamilton, D. G., Davies, J. E., Prodi, L. & Sanders, J. K. M. (1998). Chem. Eur. J.4, 608–620.
  4. Hamilton, D. G., Prodi, L., Feeder, N. & Sanders, J. K. M. (1999). J. Chem. Soc. Perkin Trans. 1, pp. 1057–1065.
  5. Hooft, R. W. W. (1998). COLLECT Nonius BV, Delft, The Netherlands.
  6. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology. Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
  7. Raehm, L., Hamilton, D. G. & Sanders, J. K. M. (2002). Synlett. pp. 1743–1761.
  8. Sheldrick, G. M. (2003). SADABS Bruker AXS Inc., Madison, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032206/zs2005sup1.cif

e-65-o2184-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032206/zs2005Isup2.hkl

e-65-o2184-Isup2.hkl (117.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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