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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Aug 26;65(Pt 9):o2230. doi: 10.1107/S1600536809032991

(4S,5S)-2-(3-Methoxy­phen­yl)-1,3-dioxolane-4,5-dicarboxamide

De-Cai Wang a,*, Tao Ge a, Wen-Yuan Wu b, Wei Xu a, Zheng Yang a
PMCID: PMC2970133  PMID: 21577629

Abstract

In the title compound, C12H14N2O5, the five-membered ring adopts an envelope conformation. In the crystal structure, inter­molecular N—H⋯O inter­actions link the mol­ecules into a three-dimensional network. A weak C—H⋯π inter­action is also found.

Related literature

For general background, see: Kim et al. (1994); Pandey et al. (1997). For bond-length data, see: Allen et al. (1987).graphic file with name e-65-o2230-scheme1.jpg

Experimental

Crystal data

  • C12H14N2O5

  • M r = 266.25

  • Orthorhombic, Inline graphic

  • a = 9.2340 (18) Å

  • b = 9.852 (2) Å

  • c = 14.266 (3) Å

  • V = 1297.8 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 294 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.971, T max = 0.979

  • 2599 measured reflections

  • 1378 independent reflections

  • 1157 reflections with I > 2σ(I)

  • R int = 0.027

  • 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.132

  • S = 1.33

  • 1378 reflections

  • 170 parameters

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032991/hk2731sup1.cif

e-65-o2230-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032991/hk2731Isup2.hkl

e-65-o2230-Isup2.hkl (68.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2B⋯O5i 0.86 2.33 3.076 (4) 145
N2—H2A⋯O4i 0.86 2.13 2.926 (4) 153
N1—H1B⋯O2ii 0.86 2.31 3.045 (4) 143
N1—H1A⋯O5iii 0.86 2.20 2.952 (4) 146
C9—H9ACg1iv 0.98 2.82 3.640 (4) 141

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic. Cg1 is the centroid of the C2–C7 ring.

Acknowledgments

The authors thank the Center of Testing and Analysis, Nanjing University for support.

supplementary crystallographic information

Comment

Antitumor platinum drug is one kind of the most effective anticancer agents currently available. (2S,3S)-Diethyl 2,3-O-alkyltartrate analogues are the starting materials for the syntheses of platinum complexes with antitumor activity (Kim et al., 1994) and are also important intermediates in organic syntheses (Pandey et al., 1997). As part of our studies on the syntheses and characterizations of these compounds, we report herein the crystal structure of the title compound.

In the molecule of the title compound, (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Ring A (C2-C7) is, of course, planar, while ring B (O2/O3/C8-C10) adopts envelope conformation with atom O2 displaced by 0.456 (3) Å from the plane of the other ring atoms.

In the crystal structure, intermolecular N-H···O interactions (Table 1) link the molecules into a three-dimensional network (Fig. 2), in which they may be effective in the stabilization of the structure. A weak C—H···π interaction (Table 1) is also found.

Experimental

For the preparation of the title compound, a mixture of (2S,3S)-diethyl- tartrate (500 mg, 2.43 mmol), 3-methoxybenzaldehyde (331 mg, 2.43 mmol), anhydrous copper(II) sulfate (776 mg, 2.86 mmol) and one drop of methanesulfonic acid in anhydrous toluene (8 ml) was stirred at room temperature for 8 h. Anhydrous magnesium sulfate (30 mg) was added to the reaction mixture, which was then stirred for 20 min. Then, the resulting colorless precipitate was obtained by evaporation and dried in the vacuo (yield; 83%). The obtained colorless product (654 mg, 2 mmol) was dissolved in anhydrous ethanol (40 ml), and a current of dry ammonia, dried by calcium cholride was passed into the reaction mixture at room temperature for 4 h. Then, the reaction mixture was filtered and the resulting product was evaporated to dryness. Crystals suitable for X-ray analysis were obtained by slow evaporation of a methanol solution after four weeks.

Refinement

H atoms were positioned geometrically with N-H = 0.86 Å (for NH2) and C-H = 0.93, 0.98 and 0.96 Å for aromatic, methine and methyl H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H, and x = 1.2 for all other H atoms. The absolute structure could not be determined reliably, and 986 Friedel pairs were averaged before the last cycle of refinement.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level

Fig. 2.

Fig. 2.

A partial packing diagram. Hydrogen bonds are shown as dashed lines.

Crystal data

C12H14N2O5 F(000) = 560
Mr = 266.25 Dx = 1.363 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 25 reflections
a = 9.2340 (18) Å θ = 9–13°
b = 9.852 (2) Å µ = 0.11 mm1
c = 14.266 (3) Å T = 294 K
V = 1297.8 (5) Å3 Block, colorless
Z = 4 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 1157 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.027
graphite θmax = 25.3°, θmin = 2.5°
ω/2θ scans h = −11→0
Absorption correction: ψ scan (North et al., 1968) k = −11→11
Tmin = 0.971, Tmax = 0.979 l = −17→0
2599 measured reflections 3 standard reflections every 120 min
1378 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132 H-atom parameters constrained
S = 1.33 w = 1/[σ2(Fo2) + (0.0632P)2 + 0.0799P] where P = (Fo2 + 2Fc2)/3
1378 reflections (Δ/σ)max < 0.001
170 parameters Δρmax = 0.31 e Å3
0 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.6259 (4) 0.9009 (4) −0.2515 (2) 0.085 (2)
O2 0.5311 (3) 0.7583 (2) 0.08959 (15) 0.0374 (6)
O3 0.7763 (3) 0.7304 (2) 0.10000 (19) 0.0431 (6)
O4 0.6719 (5) 0.3876 (3) 0.0578 (3) 0.0835 (13)
O5 0.5534 (3) 0.5637 (2) 0.30153 (17) 0.0495 (7)
N1 0.8069 (4) 0.5351 (3) −0.0253 (2) 0.0600 (11)
H1A 0.8224 0.4786 −0.0701 0.072*
H1B 0.8429 0.6155 −0.0279 0.072*
N2 0.4593 (4) 0.7713 (3) 0.2737 (2) 0.0461 (8)
H2A 0.4389 0.7854 0.3317 0.055*
H2B 0.4395 0.8322 0.2324 0.055*
C1 0.5709 (6) 0.7727 (7) −0.2635 (3) 0.093 (12)
H1C 0.5441 0.7602 −0.3280 0.140*
H1D 0.4871 0.7613 −0.2245 0.140*
H1E 0.6429 0.7069 −0.2466 0.140*
C2 0.6605 (5) 0.9407 (5) −0.1622 (3) 0.0582 (12)
C3 0.7152 (6) 1.0709 (5) −0.1530 (3) 0.0679 (15)
H3A 0.7253 1.1252 −0.2059 0.081*
C4 0.7541 (8) 1.1201 (4) −0.0684 (4) 0.0788 (18)
H4A 0.7932 1.2068 −0.0638 0.095*
C5 0.7366 (6) 1.0431 (4) 0.0109 (3) 0.0581 (12)
H5A 0.7614 1.0782 0.0692 0.070*
C6 0.6820 (4) 0.9131 (3) 0.0036 (2) 0.0380 (8)
C7 0.6436 (4) 0.8611 (4) −0.0833 (2) 0.0444 (9)
H7A 0.6069 0.7735 −0.0883 0.053*
C8 0.6654 (4) 0.8314 (3) 0.0910 (2) 0.0355 (8)
H8A 0.6676 0.8918 0.1456 0.043*
C9 0.5521 (4) 0.6389 (3) 0.1436 (2) 0.0334 (8)
H9A 0.4904 0.5665 0.1186 0.040*
C10 0.7109 (4) 0.6039 (3) 0.1246 (3) 0.0385 (8)
H10A 0.7553 0.5695 0.1823 0.046*
C11 0.7276 (5) 0.4985 (4) 0.0474 (3) 0.0469 (10)
C12 0.5210 (4) 0.6565 (3) 0.2480 (3) 0.0349 (8)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.076 (2) 0.142 (3) 0.0376 (13) −0.018 (2) −0.0052 (15) 0.0087 (18)
O2 0.0403 (13) 0.0370 (12) 0.0349 (12) −0.0019 (11) −0.0030 (12) 0.0073 (11)
O3 0.0365 (13) 0.0359 (12) 0.0569 (16) 0.0001 (11) −0.0015 (12) 0.0047 (12)
O4 0.128 (3) 0.0379 (16) 0.084 (2) −0.0130 (19) 0.065 (2) −0.0087 (16)
O5 0.0698 (18) 0.0423 (13) 0.0363 (13) 0.0070 (14) 0.0056 (14) 0.0088 (11)
N1 0.084 (3) 0.0436 (18) 0.053 (2) −0.0035 (19) 0.038 (2) −0.0072 (16)
N2 0.0574 (19) 0.0420 (16) 0.0390 (17) 0.0054 (17) 0.0148 (15) 0.0005 (13)
C1 0.065 (3) 0.165 (7) 0.049 (2) −0.063 (4) 0.031 (2) −0.035 (4)
C2 0.047 (2) 0.093 (3) 0.0348 (19) 0.010 (3) 0.0024 (18) 0.009 (2)
C3 0.091 (4) 0.053 (3) 0.060 (3) 0.021 (3) 0.029 (3) 0.023 (2)
C4 0.136 (5) 0.034 (2) 0.066 (3) 0.001 (3) 0.046 (3) 0.008 (2)
C5 0.088 (3) 0.036 (2) 0.050 (2) −0.003 (2) 0.017 (2) −0.0037 (18)
C6 0.044 (2) 0.0334 (17) 0.0366 (18) 0.0001 (15) 0.0056 (16) 0.0035 (15)
C7 0.043 (2) 0.052 (2) 0.0388 (19) −0.0026 (18) 0.0046 (18) 0.0007 (18)
C8 0.0388 (18) 0.0318 (16) 0.0360 (17) 0.0027 (14) −0.0012 (17) 0.0020 (15)
C9 0.0400 (19) 0.0285 (16) 0.0318 (17) −0.0028 (15) −0.0019 (16) 0.0024 (13)
C10 0.044 (2) 0.0333 (17) 0.0381 (18) 0.0026 (16) 0.0075 (16) 0.0042 (15)
C11 0.059 (3) 0.0342 (18) 0.048 (2) 0.0034 (18) 0.023 (2) 0.0064 (16)
C12 0.0405 (19) 0.0309 (16) 0.0332 (15) −0.0022 (15) 0.0019 (16) −0.0011 (15)

Geometric parameters (Å, °)

O1—C1 1.372 (7) C2—C7 1.380 (5)
O1—C2 1.371 (5) C2—C3 1.385 (7)
O2—C8 1.434 (4) C3—C4 1.350 (8)
O2—C9 1.419 (4) C3—H3A 0.9300
O3—C8 1.434 (4) C4—C5 1.371 (6)
O3—C10 1.429 (4) C4—H4A 0.9300
O4—C11 1.217 (5) C5—C6 1.380 (5)
O5—C12 1.228 (4) C5—H5A 0.9300
N1—C11 1.320 (5) C6—C7 1.387 (5)
N1—H1A 0.8600 C6—C8 1.492 (5)
N1—H1B 0.8600 C7—H7A 0.9300
N2—C12 1.318 (4) C8—H8A 0.9800
N2—H2A 0.8600 C9—C12 1.527 (5)
N2—H2B 0.8600 C9—C10 1.531 (5)
C1—H1C 0.9600 C9—H9A 0.9800
C1—H1D 0.9600 C10—C11 1.521 (5)
C1—H1E 0.9600 C10—H10A 0.9800
C2—O1—C1 117.8 (4) C7—C6—C8 121.4 (3)
C9—O2—C8 106.9 (2) C2—C7—C6 119.3 (4)
C10—O3—C8 109.0 (3) C2—C7—H7A 120.3
C11—N1—H1A 120.0 C6—C7—H7A 120.3
C11—N1—H1B 120.0 O2—C8—O3 105.6 (2)
H1A—N1—H1B 120.0 O2—C8—C6 110.4 (3)
C12—N2—H2A 120.0 O3—C8—C6 112.1 (3)
C12—N2—H2B 120.0 O2—C8—H8A 109.6
H2A—N2—H2B 120.0 O3—C8—H8A 109.6
O1—C1—H1C 109.5 C6—C8—H8A 109.6
O1—C1—H1D 109.5 O2—C9—C12 114.2 (3)
H1C—C1—H1D 109.5 O2—C9—C10 102.8 (3)
O1—C1—H1E 109.5 C12—C9—C10 112.2 (3)
H1C—C1—H1E 109.5 O2—C9—H9A 109.1
H1D—C1—H1E 109.5 C12—C9—H9A 109.1
O1—C2—C7 124.7 (5) C10—C9—H9A 109.1
O1—C2—C3 115.9 (4) O3—C10—C11 112.0 (3)
C7—C2—C3 119.4 (4) O3—C10—C9 104.6 (3)
C4—C3—C2 120.9 (4) C11—C10—C9 112.3 (3)
C4—C3—H3A 119.5 O3—C10—H10A 109.3
C2—C3—H3A 119.5 C11—C10—H10A 109.3
C3—C4—C5 120.5 (4) C9—C10—H10A 109.3
C3—C4—H4A 119.7 O4—C11—N1 125.1 (4)
C5—C4—H4A 119.7 O4—C11—C10 118.8 (3)
C4—C5—C6 119.6 (4) N1—C11—C10 116.0 (3)
C4—C5—H5A 120.2 O5—C12—N2 124.9 (3)
C6—C5—H5A 120.2 O5—C12—C9 118.4 (3)
C5—C6—C7 120.2 (3) N2—C12—C9 116.7 (3)
C5—C6—C8 118.4 (3)
C1—O1—C2—C7 −0.1 (7) C5—C6—C8—O3 −104.0 (4)
C1—O1—C2—C3 −179.8 (5) C7—C6—C8—O3 76.1 (4)
O1—C2—C3—C4 −179.3 (5) C8—O2—C9—C12 88.2 (3)
C7—C2—C3—C4 1.0 (8) C8—O2—C9—C10 −33.7 (3)
C2—C3—C4—C5 −1.7 (9) C8—O3—C10—C11 114.2 (3)
C3—C4—C5—C6 1.6 (8) C8—O3—C10—C9 −7.6 (4)
C4—C5—C6—C7 −0.7 (7) O2—C9—C10—O3 25.2 (3)
C4—C5—C6—C8 179.5 (5) C12—C9—C10—O3 −98.0 (3)
O1—C2—C7—C6 −179.7 (4) O2—C9—C10—C11 −96.5 (3)
C3—C2—C7—C6 −0.1 (6) C12—C9—C10—C11 140.3 (3)
C5—C6—C7—C2 −0.1 (6) O3—C10—C11—O4 −177.2 (4)
C8—C6—C7—C2 179.8 (4) C9—C10—C11—O4 −59.9 (5)
C9—O2—C8—O3 29.8 (3) O3—C10—C11—N1 4.8 (5)
C9—O2—C8—C6 151.1 (3) C9—C10—C11—N1 122.1 (4)
C10—O3—C8—O2 −12.7 (3) O2—C9—C12—O5 −171.1 (3)
C10—O3—C8—C6 −132.9 (3) C10—C9—C12—O5 −54.6 (4)
C5—C6—C8—O2 138.5 (4) O2—C9—C12—N2 9.5 (5)
C7—C6—C8—O2 −41.3 (4) C10—C9—C12—N2 126.1 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2B···O5i 0.86 2.33 3.076 (4) 145
N2—H2A···O4i 0.86 2.13 2.926 (4) 153
N1—H1B···O2ii 0.86 2.31 3.045 (4) 143
N1—H1A···O5iii 0.86 2.20 2.952 (4) 146
C9—H9A···Cg1iv 0.98 2.82 3.640 (4) 141

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x+1/2, −y+3/2, −z; (iii) −x+3/2, −y+1, z−1/2; (iv) −x, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2731).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Enraf–Nonius (1989). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
  3. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  4. Kim, D. K., Kim, G., Gam, J. S., Cho, Y. B., Kim, H. T., Tai, J. H., Kim, K. H., Hong, W. S. & Park, J. G. (1994). J. Med. Chem.37, 1471–1485. [DOI] [PubMed]
  5. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  6. Pandey, G., Hajra, S., Ghorai, M. K. & Kumar, K. R. (1997). J. Org. Chem.62, 5966–5973.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032991/hk2731sup1.cif

e-65-o2230-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032991/hk2731Isup2.hkl

e-65-o2230-Isup2.hkl (68.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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