Abstract
In the title compound, C12H14N2O5, the five-membered ring adopts an envelope conformation. In the crystal structure, intermolecular N—H⋯O interactions link the molecules into a three-dimensional network. A weak C—H⋯π interaction is also found.
Related literature
For general background, see: Kim et al. (1994 ▶); Pandey et al. (1997 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C12H14N2O5
M r = 266.25
Orthorhombic,
a = 9.2340 (18) Å
b = 9.852 (2) Å
c = 14.266 (3) Å
V = 1297.8 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.11 mm−1
T = 294 K
0.30 × 0.20 × 0.20 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.971, T max = 0.979
2599 measured reflections
1378 independent reflections
1157 reflections with I > 2σ(I)
R int = 0.027
3 standard reflections frequency: 120 min intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.050
wR(F 2) = 0.132
S = 1.33
1378 reflections
170 parameters
H-atom parameters constrained
Δρmax = 0.31 e Å−3
Δρmin = −0.40 e Å−3
Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032991/hk2731sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032991/hk2731Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2B⋯O5i | 0.86 | 2.33 | 3.076 (4) | 145 |
| N2—H2A⋯O4i | 0.86 | 2.13 | 2.926 (4) | 153 |
| N1—H1B⋯O2ii | 0.86 | 2.31 | 3.045 (4) | 143 |
| N1—H1A⋯O5iii | 0.86 | 2.20 | 2.952 (4) | 146 |
| C9—H9A⋯Cg1iv | 0.98 | 2.82 | 3.640 (4) | 141 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
. Cg1 is the centroid of the C2–C7 ring.
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University for support.
supplementary crystallographic information
Comment
Antitumor platinum drug is one kind of the most effective anticancer agents currently available. (2S,3S)-Diethyl 2,3-O-alkyltartrate analogues are the starting materials for the syntheses of platinum complexes with antitumor activity (Kim et al., 1994) and are also important intermediates in organic syntheses (Pandey et al., 1997). As part of our studies on the syntheses and characterizations of these compounds, we report herein the crystal structure of the title compound.
In the molecule of the title compound, (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Ring A (C2-C7) is, of course, planar, while ring B (O2/O3/C8-C10) adopts envelope conformation with atom O2 displaced by 0.456 (3) Å from the plane of the other ring atoms.
In the crystal structure, intermolecular N-H···O interactions (Table 1) link the molecules into a three-dimensional network (Fig. 2), in which they may be effective in the stabilization of the structure. A weak C—H···π interaction (Table 1) is also found.
Experimental
For the preparation of the title compound, a mixture of (2S,3S)-diethyl- tartrate (500 mg, 2.43 mmol), 3-methoxybenzaldehyde (331 mg, 2.43 mmol), anhydrous copper(II) sulfate (776 mg, 2.86 mmol) and one drop of methanesulfonic acid in anhydrous toluene (8 ml) was stirred at room temperature for 8 h. Anhydrous magnesium sulfate (30 mg) was added to the reaction mixture, which was then stirred for 20 min. Then, the resulting colorless precipitate was obtained by evaporation and dried in the vacuo (yield; 83%). The obtained colorless product (654 mg, 2 mmol) was dissolved in anhydrous ethanol (40 ml), and a current of dry ammonia, dried by calcium cholride was passed into the reaction mixture at room temperature for 4 h. Then, the reaction mixture was filtered and the resulting product was evaporated to dryness. Crystals suitable for X-ray analysis were obtained by slow evaporation of a methanol solution after four weeks.
Refinement
H atoms were positioned geometrically with N-H = 0.86 Å (for NH2) and C-H = 0.93, 0.98 and 0.96 Å for aromatic, methine and methyl H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H, and x = 1.2 for all other H atoms. The absolute structure could not be determined reliably, and 986 Friedel pairs were averaged before the last cycle of refinement.
Figures
Fig. 1.
The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level
Fig. 2.
A partial packing diagram. Hydrogen bonds are shown as dashed lines.
Crystal data
| C12H14N2O5 | F(000) = 560 |
| Mr = 266.25 | Dx = 1.363 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 25 reflections |
| a = 9.2340 (18) Å | θ = 9–13° |
| b = 9.852 (2) Å | µ = 0.11 mm−1 |
| c = 14.266 (3) Å | T = 294 K |
| V = 1297.8 (5) Å3 | Block, colorless |
| Z = 4 | 0.30 × 0.20 × 0.20 mm |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 1157 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.027 |
| graphite | θmax = 25.3°, θmin = 2.5° |
| ω/2θ scans | h = −11→0 |
| Absorption correction: ψ scan (North et al., 1968) | k = −11→11 |
| Tmin = 0.971, Tmax = 0.979 | l = −17→0 |
| 2599 measured reflections | 3 standard reflections every 120 min |
| 1378 independent reflections | intensity decay: 1% |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.132 | H-atom parameters constrained |
| S = 1.33 | w = 1/[σ2(Fo2) + (0.0632P)2 + 0.0799P] where P = (Fo2 + 2Fc2)/3 |
| 1378 reflections | (Δ/σ)max < 0.001 |
| 170 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.6259 (4) | 0.9009 (4) | −0.2515 (2) | 0.085 (2) | |
| O2 | 0.5311 (3) | 0.7583 (2) | 0.08959 (15) | 0.0374 (6) | |
| O3 | 0.7763 (3) | 0.7304 (2) | 0.10000 (19) | 0.0431 (6) | |
| O4 | 0.6719 (5) | 0.3876 (3) | 0.0578 (3) | 0.0835 (13) | |
| O5 | 0.5534 (3) | 0.5637 (2) | 0.30153 (17) | 0.0495 (7) | |
| N1 | 0.8069 (4) | 0.5351 (3) | −0.0253 (2) | 0.0600 (11) | |
| H1A | 0.8224 | 0.4786 | −0.0701 | 0.072* | |
| H1B | 0.8429 | 0.6155 | −0.0279 | 0.072* | |
| N2 | 0.4593 (4) | 0.7713 (3) | 0.2737 (2) | 0.0461 (8) | |
| H2A | 0.4389 | 0.7854 | 0.3317 | 0.055* | |
| H2B | 0.4395 | 0.8322 | 0.2324 | 0.055* | |
| C1 | 0.5709 (6) | 0.7727 (7) | −0.2635 (3) | 0.093 (12) | |
| H1C | 0.5441 | 0.7602 | −0.3280 | 0.140* | |
| H1D | 0.4871 | 0.7613 | −0.2245 | 0.140* | |
| H1E | 0.6429 | 0.7069 | −0.2466 | 0.140* | |
| C2 | 0.6605 (5) | 0.9407 (5) | −0.1622 (3) | 0.0582 (12) | |
| C3 | 0.7152 (6) | 1.0709 (5) | −0.1530 (3) | 0.0679 (15) | |
| H3A | 0.7253 | 1.1252 | −0.2059 | 0.081* | |
| C4 | 0.7541 (8) | 1.1201 (4) | −0.0684 (4) | 0.0788 (18) | |
| H4A | 0.7932 | 1.2068 | −0.0638 | 0.095* | |
| C5 | 0.7366 (6) | 1.0431 (4) | 0.0109 (3) | 0.0581 (12) | |
| H5A | 0.7614 | 1.0782 | 0.0692 | 0.070* | |
| C6 | 0.6820 (4) | 0.9131 (3) | 0.0036 (2) | 0.0380 (8) | |
| C7 | 0.6436 (4) | 0.8611 (4) | −0.0833 (2) | 0.0444 (9) | |
| H7A | 0.6069 | 0.7735 | −0.0883 | 0.053* | |
| C8 | 0.6654 (4) | 0.8314 (3) | 0.0910 (2) | 0.0355 (8) | |
| H8A | 0.6676 | 0.8918 | 0.1456 | 0.043* | |
| C9 | 0.5521 (4) | 0.6389 (3) | 0.1436 (2) | 0.0334 (8) | |
| H9A | 0.4904 | 0.5665 | 0.1186 | 0.040* | |
| C10 | 0.7109 (4) | 0.6039 (3) | 0.1246 (3) | 0.0385 (8) | |
| H10A | 0.7553 | 0.5695 | 0.1823 | 0.046* | |
| C11 | 0.7276 (5) | 0.4985 (4) | 0.0474 (3) | 0.0469 (10) | |
| C12 | 0.5210 (4) | 0.6565 (3) | 0.2480 (3) | 0.0349 (8) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.076 (2) | 0.142 (3) | 0.0376 (13) | −0.018 (2) | −0.0052 (15) | 0.0087 (18) |
| O2 | 0.0403 (13) | 0.0370 (12) | 0.0349 (12) | −0.0019 (11) | −0.0030 (12) | 0.0073 (11) |
| O3 | 0.0365 (13) | 0.0359 (12) | 0.0569 (16) | 0.0001 (11) | −0.0015 (12) | 0.0047 (12) |
| O4 | 0.128 (3) | 0.0379 (16) | 0.084 (2) | −0.0130 (19) | 0.065 (2) | −0.0087 (16) |
| O5 | 0.0698 (18) | 0.0423 (13) | 0.0363 (13) | 0.0070 (14) | 0.0056 (14) | 0.0088 (11) |
| N1 | 0.084 (3) | 0.0436 (18) | 0.053 (2) | −0.0035 (19) | 0.038 (2) | −0.0072 (16) |
| N2 | 0.0574 (19) | 0.0420 (16) | 0.0390 (17) | 0.0054 (17) | 0.0148 (15) | 0.0005 (13) |
| C1 | 0.065 (3) | 0.165 (7) | 0.049 (2) | −0.063 (4) | 0.031 (2) | −0.035 (4) |
| C2 | 0.047 (2) | 0.093 (3) | 0.0348 (19) | 0.010 (3) | 0.0024 (18) | 0.009 (2) |
| C3 | 0.091 (4) | 0.053 (3) | 0.060 (3) | 0.021 (3) | 0.029 (3) | 0.023 (2) |
| C4 | 0.136 (5) | 0.034 (2) | 0.066 (3) | 0.001 (3) | 0.046 (3) | 0.008 (2) |
| C5 | 0.088 (3) | 0.036 (2) | 0.050 (2) | −0.003 (2) | 0.017 (2) | −0.0037 (18) |
| C6 | 0.044 (2) | 0.0334 (17) | 0.0366 (18) | 0.0001 (15) | 0.0056 (16) | 0.0035 (15) |
| C7 | 0.043 (2) | 0.052 (2) | 0.0388 (19) | −0.0026 (18) | 0.0046 (18) | 0.0007 (18) |
| C8 | 0.0388 (18) | 0.0318 (16) | 0.0360 (17) | 0.0027 (14) | −0.0012 (17) | 0.0020 (15) |
| C9 | 0.0400 (19) | 0.0285 (16) | 0.0318 (17) | −0.0028 (15) | −0.0019 (16) | 0.0024 (13) |
| C10 | 0.044 (2) | 0.0333 (17) | 0.0381 (18) | 0.0026 (16) | 0.0075 (16) | 0.0042 (15) |
| C11 | 0.059 (3) | 0.0342 (18) | 0.048 (2) | 0.0034 (18) | 0.023 (2) | 0.0064 (16) |
| C12 | 0.0405 (19) | 0.0309 (16) | 0.0332 (15) | −0.0022 (15) | 0.0019 (16) | −0.0011 (15) |
Geometric parameters (Å, °)
| O1—C1 | 1.372 (7) | C2—C7 | 1.380 (5) |
| O1—C2 | 1.371 (5) | C2—C3 | 1.385 (7) |
| O2—C8 | 1.434 (4) | C3—C4 | 1.350 (8) |
| O2—C9 | 1.419 (4) | C3—H3A | 0.9300 |
| O3—C8 | 1.434 (4) | C4—C5 | 1.371 (6) |
| O3—C10 | 1.429 (4) | C4—H4A | 0.9300 |
| O4—C11 | 1.217 (5) | C5—C6 | 1.380 (5) |
| O5—C12 | 1.228 (4) | C5—H5A | 0.9300 |
| N1—C11 | 1.320 (5) | C6—C7 | 1.387 (5) |
| N1—H1A | 0.8600 | C6—C8 | 1.492 (5) |
| N1—H1B | 0.8600 | C7—H7A | 0.9300 |
| N2—C12 | 1.318 (4) | C8—H8A | 0.9800 |
| N2—H2A | 0.8600 | C9—C12 | 1.527 (5) |
| N2—H2B | 0.8600 | C9—C10 | 1.531 (5) |
| C1—H1C | 0.9600 | C9—H9A | 0.9800 |
| C1—H1D | 0.9600 | C10—C11 | 1.521 (5) |
| C1—H1E | 0.9600 | C10—H10A | 0.9800 |
| C2—O1—C1 | 117.8 (4) | C7—C6—C8 | 121.4 (3) |
| C9—O2—C8 | 106.9 (2) | C2—C7—C6 | 119.3 (4) |
| C10—O3—C8 | 109.0 (3) | C2—C7—H7A | 120.3 |
| C11—N1—H1A | 120.0 | C6—C7—H7A | 120.3 |
| C11—N1—H1B | 120.0 | O2—C8—O3 | 105.6 (2) |
| H1A—N1—H1B | 120.0 | O2—C8—C6 | 110.4 (3) |
| C12—N2—H2A | 120.0 | O3—C8—C6 | 112.1 (3) |
| C12—N2—H2B | 120.0 | O2—C8—H8A | 109.6 |
| H2A—N2—H2B | 120.0 | O3—C8—H8A | 109.6 |
| O1—C1—H1C | 109.5 | C6—C8—H8A | 109.6 |
| O1—C1—H1D | 109.5 | O2—C9—C12 | 114.2 (3) |
| H1C—C1—H1D | 109.5 | O2—C9—C10 | 102.8 (3) |
| O1—C1—H1E | 109.5 | C12—C9—C10 | 112.2 (3) |
| H1C—C1—H1E | 109.5 | O2—C9—H9A | 109.1 |
| H1D—C1—H1E | 109.5 | C12—C9—H9A | 109.1 |
| O1—C2—C7 | 124.7 (5) | C10—C9—H9A | 109.1 |
| O1—C2—C3 | 115.9 (4) | O3—C10—C11 | 112.0 (3) |
| C7—C2—C3 | 119.4 (4) | O3—C10—C9 | 104.6 (3) |
| C4—C3—C2 | 120.9 (4) | C11—C10—C9 | 112.3 (3) |
| C4—C3—H3A | 119.5 | O3—C10—H10A | 109.3 |
| C2—C3—H3A | 119.5 | C11—C10—H10A | 109.3 |
| C3—C4—C5 | 120.5 (4) | C9—C10—H10A | 109.3 |
| C3—C4—H4A | 119.7 | O4—C11—N1 | 125.1 (4) |
| C5—C4—H4A | 119.7 | O4—C11—C10 | 118.8 (3) |
| C4—C5—C6 | 119.6 (4) | N1—C11—C10 | 116.0 (3) |
| C4—C5—H5A | 120.2 | O5—C12—N2 | 124.9 (3) |
| C6—C5—H5A | 120.2 | O5—C12—C9 | 118.4 (3) |
| C5—C6—C7 | 120.2 (3) | N2—C12—C9 | 116.7 (3) |
| C5—C6—C8 | 118.4 (3) | ||
| C1—O1—C2—C7 | −0.1 (7) | C5—C6—C8—O3 | −104.0 (4) |
| C1—O1—C2—C3 | −179.8 (5) | C7—C6—C8—O3 | 76.1 (4) |
| O1—C2—C3—C4 | −179.3 (5) | C8—O2—C9—C12 | 88.2 (3) |
| C7—C2—C3—C4 | 1.0 (8) | C8—O2—C9—C10 | −33.7 (3) |
| C2—C3—C4—C5 | −1.7 (9) | C8—O3—C10—C11 | 114.2 (3) |
| C3—C4—C5—C6 | 1.6 (8) | C8—O3—C10—C9 | −7.6 (4) |
| C4—C5—C6—C7 | −0.7 (7) | O2—C9—C10—O3 | 25.2 (3) |
| C4—C5—C6—C8 | 179.5 (5) | C12—C9—C10—O3 | −98.0 (3) |
| O1—C2—C7—C6 | −179.7 (4) | O2—C9—C10—C11 | −96.5 (3) |
| C3—C2—C7—C6 | −0.1 (6) | C12—C9—C10—C11 | 140.3 (3) |
| C5—C6—C7—C2 | −0.1 (6) | O3—C10—C11—O4 | −177.2 (4) |
| C8—C6—C7—C2 | 179.8 (4) | C9—C10—C11—O4 | −59.9 (5) |
| C9—O2—C8—O3 | 29.8 (3) | O3—C10—C11—N1 | 4.8 (5) |
| C9—O2—C8—C6 | 151.1 (3) | C9—C10—C11—N1 | 122.1 (4) |
| C10—O3—C8—O2 | −12.7 (3) | O2—C9—C12—O5 | −171.1 (3) |
| C10—O3—C8—C6 | −132.9 (3) | C10—C9—C12—O5 | −54.6 (4) |
| C5—C6—C8—O2 | 138.5 (4) | O2—C9—C12—N2 | 9.5 (5) |
| C7—C6—C8—O2 | −41.3 (4) | C10—C9—C12—N2 | 126.1 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2B···O5i | 0.86 | 2.33 | 3.076 (4) | 145 |
| N2—H2A···O4i | 0.86 | 2.13 | 2.926 (4) | 153 |
| N1—H1B···O2ii | 0.86 | 2.31 | 3.045 (4) | 143 |
| N1—H1A···O5iii | 0.86 | 2.20 | 2.952 (4) | 146 |
| C9—H9A···Cg1iv | 0.98 | 2.82 | 3.640 (4) | 141 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x+1/2, −y+3/2, −z; (iii) −x+3/2, −y+1, z−1/2; (iv) −x, y+1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2731).
References
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- Enraf–Nonius (1989). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- Kim, D. K., Kim, G., Gam, J. S., Cho, Y. B., Kim, H. T., Tai, J. H., Kim, K. H., Hong, W. S. & Park, J. G. (1994). J. Med. Chem.37, 1471–1485. [DOI] [PubMed]
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Pandey, G., Hajra, S., Ghorai, M. K. & Kumar, K. R. (1997). J. Org. Chem.62, 5966–5973.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032991/hk2731sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032991/hk2731Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


