Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Aug 15;65(Pt 9):o2159. doi: 10.1107/S1600536809030104

1-[(4S)-4-Benzyl-2-thioxo-1,3-thia­zol­idin-3-yl]propan-1-one1

Narendar Reddy Gade a, Y Manjula b, Javed Iqbal a,*, Peddy Vishweshwar b,*
PMCID: PMC2970139  PMID: 21577567

Abstract

The analysis of the title chiral auxiliary compound, C13H15NOS2, has enabled the determination of the absolute configuration at the benzyl-bearing ring C atom as S. In the crystal structure, mol­ecules aggregate into helical chains along the b axis via C—H⋯O contacts.

Related literature

For background to the use of N-acyl thia­zolidinethio­nes as versatile chiral auxiliaries for asymmetric aldol reactions, see: Crimmins & Chaudhary (2000); Crimmins et al. (2005); Crimmins & Haley (2006); Crimmins & Dechert (2009). For the synthesis, see: McKennon & Meyer (1993); Delaunay et al. (1995); Lu et al. (2009).graphic file with name e-65-o2159-scheme1.jpg

Experimental

Crystal data

  • C13H15NOS2

  • M r = 265.39

  • Monoclinic, Inline graphic

  • a = 8.850 (6) Å

  • b = 7.189 (5) Å

  • c = 10.595 (7) Å

  • β = 95.537 (6)°

  • V = 670.9 (8) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.38 mm−1

  • T = 298 K

  • 0.50 × 0.40 × 0.20 mm

Data collection

  • Rigaku Mercury diffractometer

  • Absorption correction: multi-scan (Jacobson, 1998) T min = 0.831, T max = 0.925

  • 7301 measured reflections

  • 2734 independent reflections

  • 2361 reflections with F 2 > 2σ(F 2)

  • R int = 0.038

Refinement

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.048

  • S = 0.86

  • 2734 reflections

  • 170 parameters

  • H-atom parameters constrained

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.35 e Å−3

  • Absolute structure: Flack (1983), 1138 Friedel pairs

  • Flack parameter: −0.05 (6)

Data collection: CrystalClear (Pflugrath, 1999); cell refinement: CrystalClear; data reduction: CrystalStructure (Molecular Structure Corporation & Rigaku, 2006); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: X-SEED (Barbour et al., 2001); software used to prepare material for publication: CrystalStructure.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030104/tk2514sup1.cif

e-65-o2159-sup1.cif (16.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030104/tk2514Isup2.hkl

e-65-o2159-Isup2.hkl (149.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9⋯O1i 0.95 2.55 3.408 (4) 150

Symmetry code: (i) Inline graphic.

Acknowledgments

NRG thanks the Institute of Life Sciences for allowing him to pursue this work as part of his PhD thesis.

supplementary crystallographic information

Comment

N-Acyl thiazolidinethiones, e.g. (I), are versatile chiral auxiliaries for asymmetric aldol reactions Crimmins & Chaudhary (2000). Many complex natural products have been synthesized using these auxiliaries (Crimmins et al. 2005; Crimmins & Haley, 2006; Crimmins & Dechert, 2009). The synthesis of (I) starts from amino alcohol 2 which was converted to thiazolidinethione 3 by reacting with carbon disulfide followed by treatment with propionyl chloride (Fig. 3) (Crimmins & Chaudhary, 2000).

The single crystal analysis of (I), Fig. 1, allowed the determination of the absolute configuration of C1 as S. The crystal structure shows the molecules to aggregate into helical chains along the screw axis via C9—H9···O1 contacts (Fig. 2, Table 1).

Experimental

To a solution of β-amino alcohol 2 (10 mmol) (McKennon & Meyer, 1993) in aqueous 1.0 N potassium hydroxide (50 ml) was added carbon disulfide (50 mmol, 3.0 ml) slowly. The reaction mixture was refluxed at 110 °C for 12 h to give the desired thiazolidinethione 3 (Delaunay et al. 1995). To a solution of compound 3 (0.478 mmol) in dichloromethane (DCM, 3 ml) was added triethylamine (0.956 mmol) and the temperature was maintained at -40 to -78 °C. To that mixture was added propionyl chloride (0.574 mmol) drop wise. The mixture was stirred for 1–2 h, diluted with DCM (10 ml), washed with water (2 x 10 ml), dried over anhydrous Na2SO4 and concentrated low vacuum to give (I) as a light-yellow solid; mp. 374–376 K (lit. mp. 374.1 K (Lu et al. 2009)).

Compound (I) (50 mg) was dissolved in 2:1 DCM/EtOAC (1.0 ml) and left in freezer (10 °C) until fine crystals appeared. Crystals were separated from soluton and washed with hexane and dried under vacuum.

Refinement

The H atoms were positioned geometrically and refined in the riding model approximation with C—H = 0.95 Å, and with Uiso(H) set to 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

Molecular structure of (I) showing the atom numbering scheme. The displacement ellipsoids are drawn at the 50% probability level. H-atoms are shown by small circles of arbitrary radii.

Fig. 2.

Fig. 2.

Crystal packing of (I) showing the formation of helical chains. The C-H···O contacts are shown as dashed lines.

Fig. 3.

Fig. 3.

Synthesis of (I).

Crystal data

C13H15NOS2 F(000) = 280
Mr = 265.39 Dx = 1.314 Mg m3
Monoclinic, P21 Mo Kα radiation, λ = 0.71070 Å
Hall symbol: P 2yb Cell parameters from 3674 reflections
a = 8.850 (6) Å θ = 2.3–27.4°
b = 7.189 (5) Å µ = 0.38 mm1
c = 10.595 (7) Å T = 298 K
β = 95.537 (6)° Prism, yellow
V = 670.9 (8) Å3 0.50 × 0.40 × 0.20 mm
Z = 2

Data collection

Rigaku Mercury diffractometer 2361 reflections with F2 > 2σ(F2)
Detector resolution: 7.31 pixels mm-1 Rint = 0.038
ω scans θmax = 27.4°
Absorption correction: multi-scan (Jacobson, 1998) h = −11→11
Tmin = 0.831, Tmax = 0.925 k = −6→9
7301 measured reflections l = −13→13
2734 independent reflections

Refinement

Refinement on F2 Chebychev polynomial with 3 parameters (Carruthers & Watkin, 1979) 10359.0000 14093.9000 3595.6900
R[F2 > 2σ(F2)] = 0.041 (Δ/σ)max < 0.001
wR(F2) = 0.048 Δρmax = 0.32 e Å3
S = 0.86 Δρmin = −0.35 e Å3
2734 reflections Absolute structure: Flack (1983), 1138 Friedel pairs
170 parameters Flack parameter: −0.05 (6)
H-atom parameters constrained

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.55104 (6) 1.08609 (10) 0.94969 (5) 0.0574 (2)
S2 0.80540 (7) 1.31770 (10) 1.04864 (6) 0.0630 (2)
O1 0.96079 (17) 1.0605 (2) 0.69074 (15) 0.0720 (6)
N1 0.79082 (15) 1.1039 (2) 0.83154 (13) 0.0410 (4)
C1 0.6994 (2) 0.9543 (2) 0.76431 (19) 0.0436 (6)
C2 0.5366 (2) 0.9806 (2) 0.79429 (19) 0.0498 (7)
C3 0.7324 (2) 1.1748 (2) 0.93706 (19) 0.0462 (6)
C4 0.7616 (2) 0.7610 (2) 0.80159 (19) 0.0469 (6)
C5 0.7183 (2) 0.6180 (2) 0.70140 (17) 0.0441 (6)
C6 0.5872 (2) 0.5119 (2) 0.7014 (2) 0.0561 (7)
C7 0.5469 (3) 0.3871 (3) 0.6051 (2) 0.0673 (9)
C8 0.6379 (3) 0.3610 (3) 0.5087 (2) 0.0704 (9)
C9 0.7667 (3) 0.4651 (3) 0.5063 (2) 0.0719 (9)
C10 0.8074 (2) 0.5935 (3) 0.60097 (19) 0.0569 (7)
C11 0.9289 (2) 1.1496 (2) 0.7801 (2) 0.0501 (7)
C12 1.0320 (2) 1.3001 (3) 0.8384 (2) 0.0545 (7)
C13 1.1629 (2) 1.3369 (4) 0.7610 (2) 0.0861 (10)
H1 0.70330 0.96970 0.67560 0.0520*
H6 0.52430 0.52600 0.76860 0.0670*
H7 0.45570 0.31750 0.60530 0.0790*
H8 0.61000 0.27260 0.44400 0.0830*
H9 0.83030 0.44600 0.44020 0.0870*
H10 0.89540 0.66810 0.59680 0.0690*
H21 0.48380 1.06070 0.73390 0.0600*
H22 0.48550 0.86440 0.79480 0.0590*
H41 0.72130 0.72350 0.87750 0.0550*
H42 0.86910 0.76750 0.81570 0.0560*
H121 1.07080 1.26210 0.92110 0.0650*
H122 0.97480 1.41110 0.84380 0.0650*
H131 1.19300 1.46340 0.77050 0.1050*
H132 1.24580 1.25860 0.78930 0.1050*
H133 1.13230 1.31200 0.67430 0.1050*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0512 (2) 0.0621 (3) 0.0611 (3) −0.0066 (3) 0.0167 (2) −0.0116 (3)
S2 0.0587 (3) 0.0640 (4) 0.0664 (3) −0.0025 (3) 0.0059 (2) −0.0247 (3)
O1 0.0664 (9) 0.0751 (11) 0.0796 (10) −0.0150 (9) 0.0330 (8) −0.0265 (10)
N1 0.0401 (7) 0.0364 (8) 0.0470 (8) −0.0001 (7) 0.0062 (6) −0.0019 (7)
C1 0.0419 (10) 0.0430 (11) 0.0458 (10) −0.0008 (8) 0.0035 (8) 0.0002 (8)
C2 0.0417 (10) 0.0508 (13) 0.0561 (12) −0.0027 (9) 0.0011 (8) −0.0019 (9)
C3 0.0427 (10) 0.0438 (11) 0.0513 (11) 0.0037 (8) 0.0008 (8) −0.0042 (9)
C4 0.0510 (11) 0.0393 (11) 0.0487 (11) 0.0028 (8) −0.0031 (8) −0.0011 (8)
C5 0.0453 (10) 0.0389 (12) 0.0467 (10) 0.0008 (8) −0.0027 (8) 0.0025 (8)
C6 0.0647 (13) 0.0460 (13) 0.0569 (12) −0.0083 (10) 0.0017 (10) 0.0087 (9)
C7 0.0828 (17) 0.0465 (14) 0.0678 (15) −0.0207 (11) −0.0179 (13) 0.0093 (11)
C8 0.104 (2) 0.0511 (15) 0.0517 (13) −0.0052 (13) −0.0146 (13) −0.0034 (11)
C9 0.0992 (19) 0.0603 (15) 0.0580 (14) 0.0079 (15) 0.0176 (13) −0.0055 (12)
C10 0.0579 (11) 0.0527 (12) 0.0617 (12) 0.0015 (12) 0.0134 (9) −0.0026 (12)
C11 0.0415 (11) 0.0480 (13) 0.0617 (12) 0.0026 (8) 0.0095 (9) −0.0011 (9)
C12 0.0430 (10) 0.0488 (12) 0.0711 (13) −0.0016 (10) 0.0032 (9) −0.0073 (11)
C13 0.0543 (13) 0.086 (2) 0.121 (2) −0.0223 (15) 0.0242 (13) −0.0216 (19)

Geometric parameters (Å, °)

S1—C2 1.806 (2) C12—C13 1.506 (3)
S1—C3 1.744 (2) C1—H1 0.9500
S2—C3 1.650 (2) C2—H21 0.9500
O1—C11 1.199 (3) C2—H22 0.9500
N1—C1 1.486 (2) C4—H41 0.9500
N1—C3 1.374 (3) C4—H42 0.9500
N1—C11 1.424 (2) C6—H6 0.9500
C1—C2 1.517 (3) C7—H7 0.9500
C1—C4 1.532 (2) C8—H8 0.9500
C4—C5 1.501 (3) C9—H9 0.9500
C5—C6 1.389 (3) C10—H10 0.9500
C5—C10 1.395 (3) C12—H121 0.9500
C6—C7 1.380 (3) C12—H122 0.9500
C7—C8 1.373 (3) C13—H131 0.9500
C8—C9 1.366 (4) C13—H132 0.9500
C9—C10 1.385 (3) C13—H133 0.9500
C11—C12 1.509 (3)
C2—S1—C3 93.92 (9) C1—C2—H21 110.00
C1—N1—C3 115.36 (14) C1—C2—H22 111.00
C1—N1—C11 115.55 (14) H21—C2—H22 109.00
C3—N1—C11 129.05 (14) C1—C4—H41 109.00
N1—C1—C2 107.08 (13) C1—C4—H42 109.00
N1—C1—C4 111.56 (15) C5—C4—H41 108.00
C2—C1—C4 112.58 (14) C5—C4—H42 109.00
S1—C2—C1 104.96 (13) H41—C4—H42 109.00
S1—C3—S2 118.18 (11) C5—C6—H6 119.00
S1—C3—N1 110.37 (12) C7—C6—H6 120.00
S2—C3—N1 131.43 (14) C6—C7—H7 120.00
C1—C4—C5 112.21 (15) C8—C7—H7 119.00
C4—C5—C6 122.19 (16) C7—C8—H8 120.00
C4—C5—C10 120.09 (16) C9—C8—H8 121.00
C6—C5—C10 117.67 (16) C8—C9—H9 119.00
C5—C6—C7 120.91 (19) C10—C9—H9 120.00
C6—C7—C8 120.7 (2) C5—C10—H10 119.00
C7—C8—C9 119.3 (2) C9—C10—H10 120.00
C8—C9—C10 120.7 (2) C11—C12—H121 109.00
C5—C10—C9 120.65 (18) C11—C12—H122 109.00
O1—C11—N1 117.07 (15) C13—C12—H121 109.00
O1—C11—C12 121.82 (17) C13—C12—H122 109.00
N1—C11—C12 121.09 (16) H121—C12—H122 109.00
C11—C12—C13 111.70 (18) C12—C13—H131 109.00
N1—C1—H1 109.00 C12—C13—H132 110.00
C2—C1—H1 109.00 C12—C13—H133 109.00
C4—C1—H1 108.00 H131—C13—H132 109.00
S1—C2—H21 110.00 H131—C13—H133 110.00
S1—C2—H22 111.00 H132—C13—H133 109.00
C3—S1—C2—C1 22.91 (12) C4—C1—C2—S1 93.51 (15)
C2—S1—C3—S2 171.92 (11) N1—C1—C4—C5 −155.93 (15)
C2—S1—C3—N1 −9.64 (13) C2—C1—C4—C5 83.7 (2)
C3—N1—C1—C2 25.15 (19) C1—C4—C5—C6 −91.3 (2)
C3—N1—C1—C4 −98.44 (17) C1—C4—C5—C10 86.0 (2)
C11—N1—C1—C2 −156.77 (15) C4—C5—C6—C7 177.20 (17)
C11—N1—C1—C4 79.65 (19) C10—C5—C6—C7 −0.1 (3)
C1—N1—C3—S1 −7.69 (18) C4—C5—C10—C9 −178.46 (18)
C1—N1—C3—S2 170.47 (14) C6—C5—C10—C9 −1.1 (3)
C11—N1—C3—S1 174.53 (14) C5—C6—C7—C8 1.9 (3)
C11—N1—C3—S2 −7.3 (3) C6—C7—C8—C9 −2.4 (3)
C1—N1—C11—O1 −2.2 (2) C7—C8—C9—C10 1.2 (3)
C1—N1—C11—C12 179.47 (16) C8—C9—C10—C5 0.6 (3)
C3—N1—C11—O1 175.56 (17) O1—C11—C12—C13 7.3 (3)
C3—N1—C11—C12 −2.8 (3) N1—C11—C12—C13 −174.42 (17)
N1—C1—C2—S1 −29.44 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C9—H9···O1i 0.95 2.55 3.408 (4) 150

Symmetry codes: (i) −x+2, y−1/2, −z+1.

Footnotes

1

ILS Publication No. ILS-MCO-0904.

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2514).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem.1, 189-191.
  2. Betteridge, P. W., Carruthers, J. R., Cooper, R. I., Prout, K. & Watkin, D. J. (2003). J. Appl. Cryst.36, 1487.
  3. Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst.38, 381–388.
  4. Crimmins, M. T. & Chaudhary, K. (2000). Org. Lett.2, 775–777. [DOI] [PubMed]
  5. Crimmins, M. T., Christie, H. S., Chaudhary, K. & Long, A. (2005). J. Am. Chem. Soc.127, 13810–13812. [DOI] [PubMed]
  6. Crimmins, M. T. & Dechert, A.-M. R. (2009). Org. Lett.11, 1635–1638. [DOI] [PMC free article] [PubMed]
  7. Crimmins, M. T. & Haley, M. W. (2006). Org. Lett.8, 4223–4225. [DOI] [PubMed]
  8. Delaunay, D., Toupet, L. & Le Corre, M. J. (1995). Org. Chem.60, 6604–6607.
  9. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  10. Jacobson, R. (1998). Private communication to the Rigaku Corporation, Tokyo, Japan.
  11. Lu, C., Nie, J., Yang, G. & Chen, Z. (2009). Can. J. Chem.87, 30–32.
  12. McKennon, M. J. & Meyer, A. I. (1993). J. Org. Chem.58, 3568–3571.
  13. Molecular Structure Corporation & Rigaku (2006). CrystalStructure MSC, The Woodlands, Texas, USA, and Rigaku Corporation, Tokyo, Japan.
  14. Pflugrath, J. W. (1999). Acta Cryst. D55, 1718–1725. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030104/tk2514sup1.cif

e-65-o2159-sup1.cif (16.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030104/tk2514Isup2.hkl

e-65-o2159-Isup2.hkl (149.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES