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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Sep 5;65(Pt 10):m1158–m1159. doi: 10.1107/S1600536809034278

Aqua­{6,6′-dimeth­oxy-2,2′-[ethane-1,2-diylbis(nitrilo­methyl­idyne)]diphenolato}nickel(II)

Zhenghua Guo a, Lianzhi Li a,*, Tao Xu a, Jinghong Li a, Daqi Wang a
PMCID: PMC2970327  PMID: 21577698

Abstract

The title complex, [Ni(C18H18N2O4)(H2O)], lies on a mirror plane with the NiII ion coordinated by two N and two O atoms of a tetra­dentate Schiff base ligand and one water O atom in a distorted square-pyramidal enviroment. The –CH2–CH2– group of the ligand is disordered equally over two sites about the mirror plane. The dihedral angle between the mean planes of the two symmetry-related chelate rings is 37.16 (6)°. In the crystal structure, inter­molecular O—H⋯O hydrogen bonds link complex mol­ecules into one-dimensional chains along [100] and these chains are linked, in turn, by very weak inter­molecular C—H⋯O hydrogen bonds into a two-dimensional network.

Related literature

For background to Schiff base complexes, see: Akine et al. (2005); Gamovski et al. (1993); Garg & Kumar (2003); Tarafder et al. (2002); Yang et al. (2000). For a related crystal structure, see: Wang et al. (2007).graphic file with name e-65-m1158-scheme1.jpg

Experimental

Crystal data

  • [Ni(C18H18N2O4)(H2O)]

  • M r = 403.07

  • Orthorhombic, Inline graphic

  • a = 9.2712 (11) Å

  • b = 24.763 (3) Å

  • c = 7.5185 (10) Å

  • V = 1726.1 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.16 mm−1

  • T = 298 K

  • 0.48 × 0.42 × 0.26 mm

Data collection

  • Bruker SMART 1000 CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.607, T max = 0.753

  • 7520 measured reflections

  • 1550 independent reflections

  • 1368 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.078

  • S = 1.19

  • 1550 reflections

  • 131 parameters

  • H-atom parameters constrained

  • Δρmax = 0.16 e Å−3

  • Δρmin = −0.53 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034278/lh2877sup1.cif

e-65-m1158-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034278/lh2877Isup2.hkl

e-65-m1158-Isup2.hkl (76.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected geometric parameters (Å, °).

Ni1—O1 1.9364 (16)
Ni1—N1 1.956 (2)
Ni1—O3 2.363 (2)
O1—Ni1—O1i 90.74 (10)
O1—Ni1—N1i 167.34 (9)
O1—Ni1—N1 92.11 (8)
N1i—Ni1—N1 82.55 (14)
O1—Ni1—O3 97.90 (7)
N1—Ni1—O3 93.93 (9)

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3⋯O1ii 0.85 2.29 3.007 (3) 142
O3—H3⋯O2ii 0.85 2.18 2.9313 (19) 147
C10—H10B⋯O1iii 0.97 2.53 3.236 (7) 130
C9—H9B⋯O3ii 0.97 2.66 3.322 (7) 126

Symmetry codes: (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the Natural Science Foundation of Shandong Province (No. Y2004B02) for a research grant.

supplementary crystallographic information

Comment

Schiff base complexes play an important role in the stereochemical models of transition metal coordination chemistry with their easy preparation, diversition and structural variation (Gamovski et al.,1993). They also have been intensively investigated owing to their strong coordination capability and diverse biological activities, such as antibacterial and antitumor activities (Yang et al., 2000; Tarafder et al., 2002). Therefore, synthesis of new shiff base Nickel(II) complexes is still the aim of many recent investigations (Garg & Kumar, 2003; Akine et al., 2005). As part of a series of crystal structure studies (Wang et al., 2007), we report here the synthesis and crystal structure of the title compound.

In the molecular structure (Fig. 1), The NiII ion is five coordinated by two N and two O atoms of a new tetradentate Schiff base ligand and one O atom of water molecule in a distorted square-pyramidal configuration. Two nitrogen atoms and two oxygen atoms of Schiff base occupy the basal plane, and the O atom of the coordinated water molecule is in the apical position. The dihedral angle between the planes of the two symmetry realted Ni/N/C/C/C/O chelate rings is 37.16 (6)°. The molecule lies on a mirror plane and the -CH2-CH2- group of the ligand is disordered equally over two sites about the mirror plane.

In the crystal structure, intermolecular O—H···O hydrogen bonds link complex molecules into one-dimensional chains along [100] and these chains are linked, in turn, by very weak intermolecular C—H···O hydrogen bonds into a two-dimensional network (Fig. 2).

Experimental

1,2-ethylenediamine (1 mmol, 60.10 mg) was dissolved in hot methanol (10 ml) and added dropwise to a methanol solution (3 ml) of 3-methoxysalicylaldehyde (1 mmol, 152.14 mg). The mixture was then stirred at 323 K for 2 h. Subsequently, an aqueous solution (2 ml) of nickel chloride (1 mmol, 237.69 mg) was added dropwise and stirred for another 5 h. The solution was left at room temperature for 15 days, whereupon green block crystals suitable for X-ray diffraction were obtained.

Refinement

All H atoms were placed in geometrically calculated positions (C—H = 0.93–0.97 Å, O—H = 0.85 Å) and allowed to ride on their respective parent atoms, with Uiso(H) = 1.2Ueq(C), 1.5Ueq(methyl C) or 1.2Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme. The disorder is not shown [symmetry code: (i) x, -y+3/2, z].

Fig. 2.

Fig. 2.

Part of the crystal structure with hydrogen bonds shown as dashed lines. Only H atoms involved in hydrogen bonds are shown.

Crystal data

[Ni(C18H18N2O4)(H2O)] F(000) = 840
Mr = 403.07 Dx = 1.551 Mg m3
Orthorhombic, Pnma Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2n Cell parameters from 3742 reflections
a = 9.2712 (11) Å θ = 2.5–27.9°
b = 24.763 (3) Å µ = 1.16 mm1
c = 7.5185 (10) Å T = 298 K
V = 1726.1 (4) Å3 Block, green
Z = 4 0.48 × 0.42 × 0.26 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 1550 independent reflections
Radiation source: fine-focus sealed tube 1368 reflections with I > 2σ(I)
graphite Rint = 0.029
φ and ω scans θmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −11→11
Tmin = 0.607, Tmax = 0.753 k = −29→27
7520 measured reflections l = −5→8

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078 H-atom parameters constrained
S = 1.19 w = 1/[σ2(Fo2) + (0.0321P)2 + 0.8008P] where P = (Fo2 + 2Fc2)/3
1550 reflections (Δ/σ)max = 0.001
131 parameters Δρmax = 0.16 e Å3
0 restraints Δρmin = −0.53 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
Ni1 0.42518 (4) 0.7500 0.52345 (5) 0.03327 (16)
N1 0.5687 (2) 0.69791 (9) 0.4405 (3) 0.0577 (6)
O1 0.28010 (18) 0.69435 (6) 0.5505 (2) 0.0442 (4)
O2 0.04869 (19) 0.63591 (7) 0.5874 (3) 0.0602 (5)
O3 0.5119 (2) 0.7500 0.8191 (3) 0.0477 (6)
H3 0.5568 0.7224 0.8569 0.057*
C1 0.5493 (3) 0.64757 (11) 0.4103 (4) 0.0545 (7)
H1 0.6273 0.6282 0.3657 0.065*
C2 0.4180 (3) 0.61846 (10) 0.4391 (3) 0.0451 (6)
C3 0.2919 (3) 0.64343 (9) 0.5057 (3) 0.0402 (6)
C4 0.1686 (3) 0.60950 (10) 0.5265 (3) 0.0460 (6)
C5 0.1735 (3) 0.55512 (11) 0.4884 (4) 0.0587 (8)
H5 0.0919 0.5339 0.5055 0.070*
C6 0.2999 (4) 0.53165 (11) 0.4244 (4) 0.0675 (9)
H6 0.3025 0.4950 0.3984 0.081*
C7 0.4188 (3) 0.56250 (11) 0.4003 (4) 0.0592 (7)
H7 0.5028 0.5466 0.3574 0.071*
C8 −0.0821 (3) 0.60639 (13) 0.5993 (4) 0.0647 (8)
H8A −0.1042 0.5908 0.4855 0.097*
H8B −0.1587 0.6302 0.6344 0.097*
H8C −0.0719 0.5782 0.6859 0.097*
C9 0.7178 (7) 0.7189 (3) 0.4502 (9) 0.0473 (14) 0.50
H9A 0.7867 0.6957 0.3901 0.057* 0.50
H9B 0.7479 0.7246 0.5723 0.057* 0.50
C10 0.6943 (7) 0.7720 (3) 0.3518 (9) 0.0544 (17) 0.50
H10A 0.7810 0.7939 0.3574 0.065* 0.50
H10B 0.6726 0.7650 0.2278 0.065* 0.50

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.0290 (2) 0.0330 (2) 0.0378 (3) 0.000 0.00299 (18) 0.000
N1 0.0405 (12) 0.0549 (14) 0.0778 (16) −0.0030 (10) 0.0128 (12) −0.0225 (12)
O1 0.0373 (9) 0.0355 (9) 0.0597 (11) −0.0010 (7) 0.0046 (8) −0.0087 (8)
O2 0.0454 (11) 0.0488 (11) 0.0864 (14) −0.0098 (9) 0.0128 (10) −0.0104 (10)
O3 0.0477 (14) 0.0425 (13) 0.0530 (15) 0.000 −0.0102 (12) 0.000
C1 0.0427 (15) 0.0547 (17) 0.0660 (18) 0.0056 (13) 0.0070 (13) −0.0214 (14)
C2 0.0498 (15) 0.0426 (14) 0.0428 (14) 0.0031 (12) 0.0001 (12) −0.0074 (11)
C3 0.0437 (14) 0.0385 (13) 0.0386 (13) 0.0008 (11) −0.0034 (11) −0.0022 (10)
C4 0.0468 (15) 0.0422 (14) 0.0492 (15) −0.0034 (11) 0.0006 (12) −0.0051 (11)
C5 0.0609 (18) 0.0424 (15) 0.073 (2) −0.0111 (13) 0.0024 (15) −0.0039 (13)
C6 0.081 (2) 0.0335 (14) 0.088 (2) 0.0001 (15) 0.0074 (19) −0.0114 (14)
C7 0.0620 (18) 0.0454 (15) 0.0703 (19) 0.0081 (14) 0.0064 (15) −0.0127 (14)
C8 0.0517 (17) 0.075 (2) 0.0676 (19) −0.0234 (15) 0.0137 (15) −0.0146 (16)
C9 0.035 (3) 0.051 (3) 0.056 (4) 0.005 (2) 0.000 (3) −0.012 (3)
C10 0.036 (3) 0.062 (4) 0.065 (4) −0.001 (3) 0.011 (3) 0.010 (3)

Geometric parameters (Å, °)

Ni1—O1 1.9364 (16) C5—C6 1.393 (4)
Ni1—O1i 1.9364 (16) C5—H5 0.9300
Ni1—N1i 1.956 (2) C6—C7 1.353 (4)
Ni1—N1 1.956 (2) C6—H6 0.9300
Ni1—O3 2.363 (2) C7—H7 0.9300
N1—C1 1.280 (3) C8—H8A 0.9600
N1—C9 1.479 (7) C8—H8B 0.9600
N1—C10i 1.535 (7) C8—H8C 0.9600
O1—C3 1.310 (3) C9—C10i 0.803 (7)
O2—C4 1.369 (3) C9—C10 1.525 (7)
O2—C8 1.419 (3) C9—C9i 1.541 (13)
O3—H3 0.8501 C9—H9A 0.9700
C1—C2 1.431 (4) C9—H9B 0.9700
C1—H1 0.9300 C10—C9i 0.803 (7)
C2—C3 1.414 (3) C10—C10i 1.092 (13)
C2—C7 1.416 (4) C10—N1i 1.535 (7)
C3—C4 1.428 (3) C10—H10A 0.9700
C4—C5 1.377 (4) C10—H10B 0.9700
O1—Ni1—O1i 90.74 (10) C6—C7—H7 119.3
O1—Ni1—N1i 167.34 (9) C2—C7—H7 119.3
O1i—Ni1—N1i 92.11 (8) O2—C8—H8A 109.5
O1—Ni1—N1 92.11 (8) O2—C8—H8B 109.5
O1i—Ni1—N1 167.34 (9) H8A—C8—H8B 109.5
N1i—Ni1—N1 82.55 (14) O2—C8—H8C 109.5
O1—Ni1—O3 97.90 (7) H8A—C8—H8C 109.5
O1i—Ni1—O3 97.90 (7) H8B—C8—H8C 109.5
N1i—Ni1—O3 93.93 (9) C10i—C9—N1 78.4 (8)
N1—Ni1—O3 93.93 (9) C10i—C9—C10 43.4 (8)
C1—N1—C9 118.9 (3) N1—C9—C10 98.4 (5)
C1—N1—C10i 120.1 (3) C10i—C9—C9i 73.8 (8)
C9—N1—C10i 30.8 (3) N1—C9—C9i 110.6 (3)
C1—N1—Ni1 127.10 (19) C10—C9—C9i 30.4 (3)
C9—N1—Ni1 112.9 (3) C10i—C9—H9A 85.1
C10i—N1—Ni1 109.6 (3) N1—C9—H9A 112.6
C3—O1—Ni1 126.86 (15) C10—C9—H9A 112.2
C4—O2—C8 118.0 (2) C9i—C9—H9A 126.2
Ni1—O3—H3 118.8 C10i—C9—H9B 155.4
N1—C1—C2 125.7 (2) N1—C9—H9B 111.5
N1—C1—H1 117.2 C10—C9—H9B 112.0
C2—C1—H1 117.2 C9i—C9—H9B 81.6
C3—C2—C7 120.3 (2) H9A—C9—H9B 109.8
C3—C2—C1 122.4 (2) C9i—C10—C10i 106.2 (8)
C7—C2—C1 117.2 (2) C9i—C10—C9 75.9 (9)
O1—C3—C2 125.5 (2) C10i—C10—C9 30.4 (3)
O1—C3—C4 118.1 (2) C9i—C10—N1i 70.7 (8)
C2—C3—C4 116.3 (2) C10i—C10—N1i 119.0 (3)
O2—C4—C5 124.3 (2) C9—C10—N1i 108.4 (5)
O2—C4—C3 113.9 (2) C9i—C10—H10A 65.1
C5—C4—C3 121.7 (3) C10i—C10—H10A 124.0
C4—C5—C6 120.5 (3) C9—C10—H10A 110.1
C4—C5—H5 119.8 N1i—C10—H10A 109.8
C6—C5—H5 119.8 C9i—C10—H10B 172.9
C7—C6—C5 119.7 (3) C10i—C10—H10B 79.6
C7—C6—H6 120.1 C9—C10—H10B 109.9
C5—C6—H6 120.1 N1i—C10—H10B 110.4
C6—C7—C2 121.4 (3) H10A—C10—H10B 108.4
O1—Ni1—N1—C1 4.5 (3) C8—O2—C4—C5 −5.1 (4)
O1i—Ni1—N1—C1 −98.3 (4) C8—O2—C4—C3 175.3 (2)
N1i—Ni1—N1—C1 −163.9 (2) O1—C3—C4—O2 2.0 (3)
O3—Ni1—N1—C1 102.6 (3) C2—C3—C4—O2 −178.5 (2)
O1—Ni1—N1—C9 −162.9 (3) O1—C3—C4—C5 −177.7 (2)
O1i—Ni1—N1—C9 94.2 (5) C2—C3—C4—C5 1.8 (4)
N1i—Ni1—N1—C9 28.6 (4) O2—C4—C5—C6 179.1 (3)
O3—Ni1—N1—C9 −64.8 (3) C3—C4—C5—C6 −1.3 (4)
O1—Ni1—N1—C10i 164.1 (3) C4—C5—C6—C7 0.3 (5)
O1i—Ni1—N1—C10i 61.3 (5) C5—C6—C7—C2 0.1 (5)
N1i—Ni1—N1—C10i −4.3 (3) C3—C2—C7—C6 0.5 (5)
O3—Ni1—N1—C10i −97.8 (3) C1—C2—C7—C6 179.6 (3)
O1i—Ni1—O1—C3 162.41 (15) C1—N1—C9—C10i 101.3 (8)
N1i—Ni1—O1—C3 59.4 (4) Ni1—N1—C9—C10i −90.2 (8)
N1—Ni1—O1—C3 −5.2 (2) C1—N1—C9—C10 140.0 (4)
O3—Ni1—O1—C3 −99.51 (19) C10i—N1—C9—C10 38.8 (7)
C9—N1—C1—C2 163.8 (4) Ni1—N1—C9—C10 −51.4 (4)
C10i—N1—C1—C2 −160.6 (4) C1—N1—C9—C9i 168.8 (2)
Ni1—N1—C1—C2 −2.9 (5) C10i—N1—C9—C9i 67.6 (8)
N1—C1—C2—C3 0.2 (5) Ni1—N1—C9—C9i −22.6 (3)
N1—C1—C2—C7 −178.9 (3) C10i—C9—C10—C9i 180.000 (4)
Ni1—O1—C3—C2 4.5 (3) N1—C9—C10—C9i 116.8 (6)
Ni1—O1—C3—C4 −176.08 (17) N1—C9—C10—C10i −63.2 (6)
C7—C2—C3—O1 178.0 (3) C9i—C9—C10—C10i 180.000 (10)
C1—C2—C3—O1 −1.0 (4) C10i—C9—C10—N1i 116.3 (6)
C7—C2—C3—C4 −1.4 (4) N1—C9—C10—N1i 53.1 (4)
C1—C2—C3—C4 179.5 (2) C9i—C9—C10—N1i −63.7 (6)

Symmetry codes: (i) x, −y+3/2, z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O3—H3···O1ii 0.85 2.29 3.007 (3) 142
O3—H3···O2ii 0.85 2.18 2.9313 (19) 147
C10—H10B···O1iii 0.97 2.53 3.236 (7) 130
C9—H9B···O3ii 0.97 2.66 3.322 (7) 126

Symmetry codes: (ii) x+1/2, y, −z+3/2; (iii) x+1/2, −y+3/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2877).

References

  1. Akine, S., Taniguchi, T., Dong, W. K., Masubuchi, S. & Nabeshima, T. (2005). J. Org. Chem.70, 1704–1711. [DOI] [PubMed]
  2. Gamovski, A. D., Nivorozhkin, A. L. & Minkin, V. I. (1993). Coord. Chem. Rev.126, 1–69.
  3. Garg, B. S. & Kumar, D. N. (2003). Spectrochim. Acta Part A, 59, 229–232. [DOI] [PubMed]
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.
  7. Tarafder, M. T. H., Khoo, T.-J., Crouse, K. A., Ali, A. M., Yamin, B. M. & Fun, H.-K. (2002). Polyhedron, 21, 2691–2698.
  8. Wang, L., Dong, J.-F., Li, L.-Z., Li, L.-W. & Wang, D.-Q. (2007). Acta Cryst. E63, m1059–m1060.
  9. Yang, Z.-Y., Yang, R.-D., Li, F.-S. & Yu, K.-B. (2000). Polyhedron, 19, 2599–2604.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034278/lh2877sup1.cif

e-65-m1158-sup1.cif (18.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034278/lh2877Isup2.hkl

e-65-m1158-Isup2.hkl (76.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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