Abstract
The title compound, C18H13N5·H2O, was synthesized by the condensation of pyridine-4-carbaldehyde and ammonium acetate, forming a multipyridyl ligand. In the crystal, molecules are linked into chains by O—H⋯N hydrogen bonds. The chains are linked by weak C—H⋯N interactions, generating a layer structure.
Related literature
2,4,5-Tri-4-pyridyl-imidazole is used in the construction of metal-organic coordination polymers, see: Liang et al. (2009 ▶).
Experimental
Crystal data
C18H13N5·H2O
M r = 317.35
Triclinic,
a = 8.910 (2) Å
b = 9.401 (2) Å
c = 10.638 (2) Å
α = 72.027 (4)°
β = 70.624 (4)°
γ = 77.716 (4)°
V = 793.4 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 293 K
0.30 × 0.26 × 0.22 mm
Data collection
Bruker APEXII area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.974, T max = 0.981
4313 measured reflections
3067 independent reflections
1720 reflections with I > 2σ(I)
R int = 0.025
Refinement
R[F 2 > 2σ(F 2)] = 0.045
wR(F 2) = 0.059
S = 1.02
3067 reflections
217 parameters
3 restraints
H-atom parameters constrained
Δρmax = 0.15 e Å−3
Δρmin = −0.15 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032267/hg2553sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032267/hg2553Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected torsion angles (°).
| C4—C3—C6—N2 | −12.2 (4) |
| C14—C7—C8—C9 | 1.8 (5) |
| N1—C8—C9—C13 | −88.5 (3) |
| N2—C7—C14—C18 | −7.7 (3) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1C⋯O1 | 0.94 | 1.82 | 2.756 (2) | 173 |
| C10—H10⋯N2i | 0.93 | 2.59 | 3.467 (3) | 158 |
| O1—H1B⋯N4ii | 0.91 | 1.96 | 2.869 (2) | 174 |
| O1—H1A⋯N5iii | 0.87 | 1.94 | 2.808 (2) | 174 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The author gratefully acknowledges financial support from the Educational Commission of Jiangxi Province of China (GJJ08448) and the Natural Science Foundation of Jiangxi Province of China (2008GQC0002).
supplementary crystallographic information
Comment
2,4,5-tri(4-pyridyl)imidazole is a multipyridyl compound, which is useful to construct new metal-organic coordination polymers (Liang et al., 2009). In this paper, we report the synthesis and X-ray crystal structure analysis of the title compound, (I,) 2,4,5-tri(4-pyridyl)imidazole with one co-crystallized water molecule.
In 2,4,5-tri(4-pyridyl)imidazole three pyridyl groups are directly connected with the imidazole ring. The dihedral angles between the mean planes of pyridyl ring A and imidazole ring D is 11.6 (4)°, that of pyridyl ring B and imidazole ring D is 8.4 (3)°, and that of pyridyl ring C and imidazole ring D is 84.1 (3)°, suggesting that the plane of ring A and B are co-planar with ring D, but that ring C and ring D are almost vertical.
In the crystal lattice the molecules are linked by O—H···N hydrogen bonds, and by weak C—H···N interactions to generate a three-dimensional layer structure (Fig 2).
Experimental
A mixture of 2 g (0.018 mol) of 4-pyridinecarbaldehyde and 8 g (0.1 mol) of ammonium acetate was heated to 393 K with stirring 3 h. The reaction mixture was cooled, the precipitate was filtered off, washed with water, 5% solution of NaOH, and recrystallized from ethanol. Single crystals of 2,4,5-tri(4-pyridyl)imidazole suitable for X-ray analysis were obtained by slow evaporation at room temperature of a methanol solution. 1H NMR (500 MHz, DMSO-d6) 8.70(t, 4H), 8.54 (s, 2H), 8.02 (s, 2H), 7.53 (s, 4H) MS: found [M+] = 299.1, cal [M+] = 299.3.
Refinement
The H atoms of the pyridyl rings were constrainted as idealized aromatic CH groups. The H atoms of water, H1A and H1B, were located in a difference Fourier map and the O1—H1A and O1—H1B were restrained to 0.85Å, the H1A—H1Bwas restrained to 1.35Å. The proton on the imidazole N atom, H1C,was also located in a difference Fourier map and N1—H1C was restrained to 0.94Å. The Uiso(H) was equal to 1.2 times that of the parent atoms for all H atoms.
Figures
Fig. 1.
The molecular structure of (I), showing 30% probability displacement ellipsoids.
Fig. 2.
The packing diagram of (I), viewed along the c axis; hydrogen bonds are shown as dashed lines.
Crystal data
| C18H13N5·H2O | Z = 2 |
| Mr = 317.35 | F(000) = 332 |
| Triclinic, P1 | Dx = 1.328 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.910 (2) Å | Cell parameters from 4826 reflections |
| b = 9.401 (2) Å | θ = 0.9–28.3° |
| c = 10.638 (2) Å | µ = 0.09 mm−1 |
| α = 72.027 (4)° | T = 293 K |
| β = 70.624 (4)° | Block, yellow |
| γ = 77.716 (4)° | 0.30 × 0.26 × 0.22 mm |
| V = 793.4 (3) Å3 |
Data collection
| Bruker APEXII area-detector diffractometer | 3067 independent reflections |
| Radiation source: fine-focus sealed tube | 1720 reflections with I > 2σ(I) |
| graphite | Rint = 0.025 |
| φ and ω scans | θmax = 26.1°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −11→10 |
| Tmin = 0.974, Tmax = 0.981 | k = −11→8 |
| 4313 measured reflections | l = −13→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.059 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0004P)2] where P = (Fo2 + 2Fc2)/3 |
| 3067 reflections | (Δ/σ)max < 0.001 |
| 217 parameters | Δρmax = 0.15 e Å−3 |
| 3 restraints | Δρmin = −0.15 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.3675 (3) | 0.6040 (2) | 0.2766 (3) | 0.0664 (8) | |
| H1 | 0.2702 | 0.6621 | 0.2711 | 0.080* | |
| C2 | 0.3638 (3) | 0.4768 (2) | 0.3848 (2) | 0.0539 (7) | |
| H2 | 0.2669 | 0.4515 | 0.4492 | 0.065* | |
| C3 | 0.5060 (3) | 0.3871 (2) | 0.3965 (2) | 0.0403 (6) | |
| C4 | 0.6444 (3) | 0.4344 (2) | 0.2983 (2) | 0.0505 (7) | |
| H4 | 0.7436 | 0.3798 | 0.3023 | 0.061* | |
| C5 | 0.6343 (3) | 0.5632 (3) | 0.1943 (2) | 0.0616 (8) | |
| H5 | 0.7295 | 0.5920 | 0.1291 | 0.074* | |
| C6 | 0.5121 (2) | 0.2487 (2) | 0.5058 (2) | 0.0391 (6) | |
| C7 | 0.5929 (2) | 0.0342 (2) | 0.6266 (2) | 0.0394 (6) | |
| C8 | 0.4352 (2) | 0.0717 (2) | 0.6957 (2) | 0.0409 (6) | |
| C9 | 0.3254 (2) | −0.0054 (2) | 0.8263 (2) | 0.0411 (6) | |
| C10 | 0.2358 (3) | −0.1086 (2) | 0.8270 (3) | 0.0599 (8) | |
| H10 | 0.2408 | −0.1288 | 0.7453 | 0.072* | |
| C11 | 0.1383 (3) | −0.1815 (3) | 0.9518 (3) | 0.0648 (8) | |
| H11 | 0.0798 | −0.2522 | 0.9513 | 0.078* | |
| C12 | 0.2082 (3) | −0.0560 (3) | 1.0683 (3) | 0.0626 (8) | |
| H12 | 0.1995 | −0.0363 | 1.1511 | 0.075* | |
| C13 | 0.3095 (2) | 0.0224 (2) | 0.9487 (2) | 0.0530 (7) | |
| H13 | 0.3659 | 0.0932 | 0.9519 | 0.064* | |
| C14 | 0.7046 (2) | −0.1000 (2) | 0.6596 (2) | 0.0408 (6) | |
| C15 | 0.6737 (2) | −0.2114 (2) | 0.7826 (2) | 0.0518 (7) | |
| H15 | 0.5777 | −0.2024 | 0.8512 | 0.062* | |
| C16 | 0.7863 (3) | −0.3359 (2) | 0.8028 (3) | 0.0609 (8) | |
| H16 | 0.7620 | −0.4090 | 0.8862 | 0.073* | |
| C17 | 0.9555 (3) | −0.2501 (3) | 0.5936 (3) | 0.0675 (9) | |
| H17 | 1.0532 | −0.2614 | 0.5274 | 0.081* | |
| C18 | 0.8497 (2) | −0.1228 (2) | 0.5640 (2) | 0.0558 (8) | |
| H18 | 0.8765 | −0.0523 | 0.4792 | 0.067* | |
| N1 | 0.38651 (19) | 0.20619 (17) | 0.61671 (17) | 0.0441 (5) | |
| H1C | 0.2849 | 0.2595 | 0.6454 | 0.053* | |
| N2 | 0.63900 (18) | 0.14695 (18) | 0.50748 (17) | 0.0417 (5) | |
| N3 | 0.4987 (3) | 0.6500 (2) | 0.1798 (2) | 0.0669 (7) | |
| N4 | 0.9263 (2) | −0.3581 (2) | 0.7116 (2) | 0.0642 (7) | |
| N5 | 0.1230 (2) | −0.1573 (2) | 1.0716 (2) | 0.0578 (6) | |
| O1 | 0.07758 (16) | 0.34217 (15) | 0.70240 (16) | 0.0723 (6) | |
| H1A | 0.0112 | 0.2912 | 0.7740 | 0.087* | |
| H1B | 0.0296 | 0.4357 | 0.7119 | 0.087* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0606 (18) | 0.0525 (17) | 0.075 (2) | −0.0030 (13) | −0.0288 (16) | 0.0057 (15) |
| C2 | 0.0493 (16) | 0.0470 (16) | 0.0557 (18) | −0.0069 (12) | −0.0138 (13) | −0.0002 (13) |
| C3 | 0.0441 (14) | 0.0339 (13) | 0.0413 (15) | −0.0052 (11) | −0.0110 (12) | −0.0087 (11) |
| C4 | 0.0506 (15) | 0.0445 (15) | 0.0472 (16) | −0.0069 (12) | −0.0090 (13) | −0.0039 (13) |
| C5 | 0.0673 (19) | 0.0564 (17) | 0.0499 (18) | −0.0210 (14) | −0.0076 (15) | 0.0009 (14) |
| C6 | 0.0371 (14) | 0.0352 (13) | 0.0391 (15) | −0.0044 (11) | −0.0068 (12) | −0.0059 (11) |
| C7 | 0.0389 (14) | 0.0316 (13) | 0.0431 (15) | −0.0020 (10) | −0.0094 (11) | −0.0072 (12) |
| C8 | 0.0427 (14) | 0.0306 (13) | 0.0403 (15) | −0.0023 (11) | −0.0074 (12) | −0.0029 (11) |
| C9 | 0.0379 (14) | 0.0310 (14) | 0.0423 (16) | 0.0039 (10) | −0.0062 (12) | −0.0035 (12) |
| C10 | 0.0671 (18) | 0.0481 (16) | 0.0545 (18) | −0.0157 (13) | 0.0014 (14) | −0.0138 (14) |
| C11 | 0.0677 (19) | 0.0475 (17) | 0.069 (2) | −0.0186 (13) | −0.0037 (17) | −0.0105 (16) |
| C12 | 0.0691 (19) | 0.0614 (18) | 0.0475 (18) | −0.0080 (14) | −0.0121 (15) | −0.0054 (15) |
| C13 | 0.0559 (17) | 0.0472 (16) | 0.0466 (17) | −0.0126 (12) | −0.0087 (13) | −0.0017 (13) |
| C14 | 0.0371 (13) | 0.0352 (13) | 0.0478 (16) | −0.0029 (10) | −0.0111 (12) | −0.0097 (12) |
| C15 | 0.0468 (15) | 0.0437 (15) | 0.0510 (17) | 0.0046 (12) | −0.0081 (13) | −0.0060 (13) |
| C16 | 0.0644 (18) | 0.0460 (16) | 0.0592 (19) | 0.0018 (14) | −0.0175 (15) | −0.0014 (13) |
| C17 | 0.0456 (16) | 0.0552 (18) | 0.077 (2) | 0.0033 (13) | −0.0018 (15) | −0.0065 (16) |
| C18 | 0.0424 (14) | 0.0429 (15) | 0.0631 (18) | 0.0009 (12) | −0.0061 (13) | −0.0009 (13) |
| N1 | 0.0363 (11) | 0.0334 (11) | 0.0475 (13) | 0.0033 (8) | −0.0024 (10) | −0.0050 (10) |
| N2 | 0.0382 (11) | 0.0356 (11) | 0.0430 (12) | −0.0028 (9) | −0.0068 (9) | −0.0048 (9) |
| N3 | 0.0751 (16) | 0.0556 (14) | 0.0610 (16) | −0.0149 (13) | −0.0254 (13) | 0.0083 (12) |
| N4 | 0.0509 (14) | 0.0481 (13) | 0.0766 (17) | 0.0070 (10) | −0.0139 (12) | −0.0061 (12) |
| N5 | 0.0524 (14) | 0.0451 (14) | 0.0571 (16) | −0.0041 (10) | −0.0046 (12) | −0.0001 (12) |
| O1 | 0.0484 (10) | 0.0450 (10) | 0.0835 (13) | 0.0044 (7) | 0.0126 (9) | −0.0020 (9) |
Geometric parameters (Å, °)
| C1—N3 | 1.325 (2) | C10—H10 | 0.9300 |
| C1—C2 | 1.377 (3) | C11—N5 | 1.321 (3) |
| C1—H1 | 0.9300 | C11—H11 | 0.9300 |
| C2—C3 | 1.385 (3) | C12—N5 | 1.324 (3) |
| C2—H2 | 0.9300 | C12—C13 | 1.385 (3) |
| C3—C4 | 1.379 (2) | C12—H12 | 0.9300 |
| C3—C6 | 1.458 (3) | C13—H13 | 0.9300 |
| C4—C5 | 1.374 (3) | C14—C18 | 1.377 (2) |
| C4—H4 | 0.9300 | C14—C15 | 1.386 (3) |
| C5—N3 | 1.333 (3) | C15—C16 | 1.382 (3) |
| C5—H5 | 0.9300 | C15—H15 | 0.9300 |
| C6—N2 | 1.318 (2) | C16—N4 | 1.324 (2) |
| C6—N1 | 1.352 (2) | C16—H16 | 0.9300 |
| C7—C8 | 1.379 (2) | C17—N4 | 1.335 (3) |
| C7—N2 | 1.381 (2) | C17—C18 | 1.380 (3) |
| C7—C14 | 1.460 (3) | C17—H17 | 0.9300 |
| C8—N1 | 1.359 (2) | C18—H18 | 0.9300 |
| C8—C9 | 1.480 (3) | N1—H1C | 0.9393 |
| C9—C13 | 1.362 (3) | O1—H1A | 0.8697 |
| C9—C10 | 1.378 (3) | O1—H1B | 0.9124 |
| C10—C11 | 1.383 (3) | ||
| N3—C1—C2 | 125.1 (2) | N5—C11—H11 | 117.9 |
| N3—C1—H1 | 117.4 | C10—C11—H11 | 117.9 |
| C2—C1—H1 | 117.4 | N5—C12—C13 | 123.8 (3) |
| C1—C2—C3 | 119.2 (2) | N5—C12—H12 | 118.1 |
| C1—C2—H2 | 120.4 | C13—C12—H12 | 118.1 |
| C3—C2—H2 | 120.4 | C9—C13—C12 | 119.2 (2) |
| C4—C3—C2 | 116.7 (2) | C9—C13—H13 | 120.4 |
| C4—C3—C6 | 120.74 (19) | C12—C13—H13 | 120.4 |
| C2—C3—C6 | 122.61 (19) | C18—C14—C15 | 116.15 (19) |
| C5—C4—C3 | 119.3 (2) | C18—C14—C7 | 119.69 (19) |
| C5—C4—H4 | 120.3 | C15—C14—C7 | 124.15 (19) |
| C3—C4—H4 | 120.3 | C16—C15—C14 | 119.7 (2) |
| N3—C5—C4 | 125.0 (2) | C16—C15—H15 | 120.1 |
| N3—C5—H5 | 117.5 | C14—C15—H15 | 120.1 |
| C4—C5—H5 | 117.5 | N4—C16—C15 | 124.4 (2) |
| N2—C6—N1 | 111.24 (18) | N4—C16—H16 | 117.8 |
| N2—C6—C3 | 124.49 (18) | C15—C16—H16 | 117.8 |
| N1—C6—C3 | 124.24 (18) | N4—C17—C18 | 124.0 (2) |
| C8—C7—N2 | 109.24 (17) | N4—C17—H17 | 118.0 |
| C8—C7—C14 | 130.29 (19) | C18—C17—H17 | 118.0 |
| N2—C7—C14 | 120.44 (17) | C14—C18—C17 | 120.1 (2) |
| N1—C8—C7 | 105.72 (17) | C14—C18—H18 | 119.9 |
| N1—C8—C9 | 121.56 (17) | C17—C18—H18 | 119.9 |
| C7—C8—C9 | 132.71 (19) | C6—N1—C8 | 108.05 (16) |
| C13—C9—C10 | 118.0 (2) | C6—N1—H1C | 129.5 |
| C13—C9—C8 | 121.6 (2) | C8—N1—H1C | 122.1 |
| C10—C9—C8 | 120.4 (2) | C6—N2—C7 | 105.72 (16) |
| C9—C10—C11 | 118.5 (2) | C1—N3—C5 | 114.6 (2) |
| C9—C10—H10 | 120.7 | C16—N4—C17 | 115.58 (19) |
| C11—C10—H10 | 120.7 | C11—N5—C12 | 116.2 (2) |
| N5—C11—C10 | 124.3 (3) | H1A—O1—H1B | 96.8 |
| N3—C1—C2—C3 | −0.1 (4) | C8—C7—C14—C18 | 170.3 (3) |
| C1—C2—C3—C4 | 1.3 (4) | N2—C7—C14—C18 | −7.7 (3) |
| C1—C2—C3—C6 | −178.4 (2) | C8—C7—C14—C15 | −8.4 (4) |
| C2—C3—C4—C5 | −1.5 (3) | N2—C7—C14—C15 | 173.6 (2) |
| C6—C3—C4—C5 | 178.2 (2) | C18—C14—C15—C16 | 0.0 (4) |
| C3—C4—C5—N3 | 0.5 (4) | C7—C14—C15—C16 | 178.7 (2) |
| C4—C3—C6—N2 | −12.2 (4) | C14—C15—C16—N4 | 0.3 (4) |
| C2—C3—C6—N2 | 167.5 (2) | C15—C14—C18—C17 | −0.6 (4) |
| C4—C3—C6—N1 | 169.8 (2) | C7—C14—C18—C17 | −179.4 (2) |
| C2—C3—C6—N1 | −10.4 (4) | N4—C17—C18—C14 | 0.9 (4) |
| N2—C7—C8—N1 | 0.8 (3) | N2—C6—N1—C8 | 1.3 (3) |
| C14—C7—C8—N1 | −177.4 (2) | C3—C6—N1—C8 | 179.5 (2) |
| N2—C7—C8—C9 | 180.0 (2) | C7—C8—N1—C6 | −1.3 (3) |
| C14—C7—C8—C9 | 1.8 (5) | C9—C8—N1—C6 | 179.5 (2) |
| N1—C8—C9—C13 | −88.5 (3) | N1—C6—N2—C7 | −0.8 (3) |
| C7—C8—C9—C13 | 92.5 (3) | C3—C6—N2—C7 | −179.0 (2) |
| N1—C8—C9—C10 | 91.7 (3) | C8—C7—N2—C6 | 0.0 (3) |
| C7—C8—C9—C10 | −87.4 (4) | C14—C7—N2—C6 | 178.4 (2) |
| C13—C9—C10—C11 | −1.8 (3) | C2—C1—N3—C5 | −0.9 (4) |
| C8—C9—C10—C11 | 178.05 (19) | C4—C5—N3—C1 | 0.7 (4) |
| C9—C10—C11—N5 | 1.1 (4) | C15—C16—N4—C17 | 0.0 (4) |
| C10—C9—C13—C12 | 1.6 (3) | C18—C17—N4—C16 | −0.6 (4) |
| C8—C9—C13—C12 | −178.25 (19) | C10—C11—N5—C12 | 0.0 (4) |
| N5—C12—C13—C9 | −0.6 (4) | C13—C12—N5—C11 | −0.2 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1C···O1 | 0.94 | 1.82 | 2.756 (2) | 173 |
| C10—H10···N2i | 0.93 | 2.59 | 3.467 (3) | 158 |
| O1—H1B···N4ii | 0.91 | 1.96 | 2.869 (2) | 174 |
| O1—H1A···N5iii | 0.87 | 1.94 | 2.808 (2) | 174 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x−1, y+1, z; (iii) −x, −y, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2553).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032267/hg2553sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032267/hg2553Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


