Abstract
Colourless crystals of the title mixed ligand complex, [Ag(C5H7N3)(C6H9N3)]ClO4, were obtained from a solution of 2-amino-4-methylpyrimidine, 2-amino-4,6-dimethylpyrimidine and silver perchlorate in water and methanol. The crystal structure is stabilized by intermolecular N—H⋯O and N—H⋯N hydrogen bonds and π–π stacking interactions of the aromatic rings of the two ligands [interplanar distance = 3.652 (10) Å]. The AgI atom shows a linear coordination [N—Ag—N = 174.6 (1)°].
Related literature
For N—Ag—N geometry, see: Greenwood & Earnshaw (1997 ▶). For π–π stacking, see: Munakata et al. (2000 ▶). For silver coordination networks, see: Shimizu et al. (1999 ▶); Seward et al. (2004 ▶).
Experimental
Crystal data
[Ag(C5H7N3)(C6H9N3)]ClO4
M r = 439.62
Monoclinic,
a = 12.3952 (5) Å
b = 7.8324 (4) Å
c = 15.9956 (5) Å
β = 94.339 (3)°
V = 1548.47 (11) Å3
Z = 4
Mo Kα radiation
μ = 1.50 mm−1
T = 120 K
0.40 × 0.40 × 0.25 mm
Data collection
Bruker APEXII diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.553, T max = 0.678
8880 measured reflections
2678 independent reflections
2254 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.037
wR(F 2) = 0.100
S = 1.07
2678 reflections
211 parameters
H-atom parameters constrained
Δρmax = 1.36 e Å−3
Δρmin = −0.53 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035193/ng2621sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035193/ng2621Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N5—H5C⋯O4i | 0.86 | 2.32 | 3.131 (5) | 158 |
| N5—H5B⋯N3ii | 0.86 | 2.20 | 3.050 (5) | 172 |
| N2—H2B⋯O2 | 0.86 | 2.50 | 3.077 (5) | 126 |
| N2—H2A⋯N6iii | 0.86 | 2.30 | 3.147 (5) | 169 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The author thanks the Natural Science Foundation of Heilongjiang Province for financial support.
supplementary crystallographic information
Comment
The structure of the title compound (I) comprises of uncoordinated ClO4- anions and [Ag(2-amino-4-methylpyrimidine)(2-amino-4,6-dimethylpyrimidine)]+ cations. The central silver(I) ion, possessing its vacant s and p orbitals, coordinated to two nitrogen atoms from those two different pyrimidine derivative ligands, presenting nearly linear N-Ag-N geometry Greenwood et al., 1997). An one dimensional framework was built by multiple intermolecular N–H–N hydrogen bonds along one of the diagonals of a and c axial plane, while pi–pi stacking interaction of the aromatic rings with an interplane distance 3.65 Å stabilized the whole crystal structure (Munakata et al., 2000).
Experimental
A solution of 108 mg (1 mmol) 2-amino-4-methylpyrimidine and 123 mg (1 mmol) of 2-amino-4,6-dimethylpyrimidine in distilled water-CH3OH (1:1 v/v, 10 mL) was added to an aqueous solution of AgClO4 208 mg (1 mmol) in 3 ml distilled water at 333 K. A small amount of white precipitate was removed from the resulting solution. Prism colorless crystals were obtained by slow evaporation at room temperature over a period of 3 days.
Refinement
All H atoms were placed in calculated positions and refined as riding, with C–H = 0.96–0.98 Å, and N–H = 0.86 Å, and Uiso(H) = 1.2 or 1.5Ueq(C,N). The final difference map had a peak near Ag1.
Figures
Fig. 1.
The molecular structure with atom labels and 30% probability displacement ellipsoids for non-H atoms.
Fig. 2.
The packing diagram of molecules, viewed down the b axis, with the weak interactions shown as dashed lines.
Crystal data
| [Ag(C5H7N3)(C6H9N3)]ClO4 | F(000) = 880 |
| Mr = 439.62 | Dx = 1.886 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2795 reflections |
| a = 12.3952 (5) Å | θ = 2.6–32.8° |
| b = 7.8324 (4) Å | µ = 1.50 mm−1 |
| c = 15.9956 (5) Å | T = 120 K |
| β = 94.339 (3)° | Prism, colourless |
| V = 1548.47 (11) Å3 | 0.40 × 0.40 × 0.25 mm |
| Z = 4 |
Data collection
| Bruker APEXII diffractometer | 2678 independent reflections |
| Radiation source: fine-focus sealed tube | 2254 reflections with I > 2σ(I) |
| graphite | Rint = 0.028 |
| φ and ω scans | θmax = 25.0°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −14→14 |
| Tmin = 0.553, Tmax = 0.678 | k = −8→9 |
| 8880 measured reflections | l = −19→19 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.100 | H-atom parameters constrained |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0544P)2 + 2.3112P] where P = (Fo2 + 2Fc2)/3 |
| 2678 reflections | (Δ/σ)max = 0.001 |
| 211 parameters | Δρmax = 1.36 e Å−3 |
| 0 restraints | Δρmin = −0.52 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Ag1 | 0.19079 (3) | 0.45483 (5) | 0.720510 (19) | 0.04423 (15) | |
| C1 | 0.1554 (4) | 0.3648 (7) | 0.3245 (3) | 0.0544 (12) | |
| H1A | 0.1108 | 0.2682 | 0.3087 | 0.082* | |
| H1B | 0.2261 | 0.3487 | 0.3051 | 0.082* | |
| H1C | 0.1235 | 0.4663 | 0.2998 | 0.082* | |
| C2 | 0.1644 (3) | 0.3818 (5) | 0.4169 (3) | 0.0373 (9) | |
| C3 | 0.0929 (3) | 0.3330 (5) | 0.5423 (2) | 0.0332 (9) | |
| C4 | 0.2530 (4) | 0.4782 (6) | 0.5433 (3) | 0.0398 (10) | |
| H4A | 0.3106 | 0.5345 | 0.5720 | 0.048* | |
| C5 | 0.2516 (4) | 0.4648 (6) | 0.4585 (3) | 0.0410 (10) | |
| H5A | 0.3073 | 0.5097 | 0.4294 | 0.049* | |
| C6 | 0.3056 (3) | 0.4035 (5) | 0.8973 (2) | 0.0316 (8) | |
| C7 | 0.1481 (3) | 0.5552 (5) | 0.9020 (3) | 0.0369 (9) | |
| C8 | 0.0587 (4) | 0.6489 (7) | 0.8581 (3) | 0.0566 (13) | |
| H8A | 0.0871 | 0.7365 | 0.8240 | 0.085* | |
| H8B | 0.0149 | 0.7000 | 0.8983 | 0.085* | |
| H8C | 0.0153 | 0.5717 | 0.8231 | 0.085* | |
| C9 | 0.1577 (4) | 0.5429 (6) | 0.9877 (3) | 0.0419 (10) | |
| H9A | 0.1075 | 0.5953 | 1.0197 | 0.050* | |
| C10 | 0.2424 (4) | 0.4521 (5) | 1.0253 (3) | 0.0380 (9) | |
| C11 | 0.2548 (5) | 0.4273 (8) | 1.1177 (3) | 0.0606 (14) | |
| H11A | 0.3269 | 0.4582 | 1.1384 | 0.091* | |
| H11B | 0.2420 | 0.3097 | 1.1307 | 0.091* | |
| H11C | 0.2037 | 0.4979 | 1.1437 | 0.091* | |
| N1 | 0.2212 (3) | 0.4824 (4) | 0.8553 (2) | 0.0319 (7) | |
| N2 | 0.3831 (3) | 0.3336 (4) | 0.8522 (2) | 0.0383 (8) | |
| H2A | 0.4366 | 0.2798 | 0.8774 | 0.046* | |
| H2B | 0.3785 | 0.3430 | 0.7985 | 0.046* | |
| N3 | 0.3176 (3) | 0.3841 (5) | 0.9803 (2) | 0.0365 (8) | |
| N4 | 0.1743 (3) | 0.4133 (4) | 0.5875 (2) | 0.0350 (8) | |
| N5 | 0.0136 (3) | 0.2635 (5) | 0.5824 (2) | 0.0455 (9) | |
| H5B | −0.0386 | 0.2113 | 0.5545 | 0.055* | |
| H5C | 0.0144 | 0.2708 | 0.6360 | 0.055* | |
| N6 | 0.0857 (3) | 0.3161 (4) | 0.4580 (2) | 0.0361 (8) | |
| Cl1 | 0.50494 (9) | 0.64276 (14) | 0.68793 (6) | 0.0412 (3) | |
| O1 | 0.4928 (3) | 0.6816 (5) | 0.6012 (2) | 0.0629 (10) | |
| O2 | 0.4001 (3) | 0.6130 (5) | 0.7187 (2) | 0.0617 (9) | |
| O3 | 0.5697 (3) | 0.4961 (5) | 0.7031 (3) | 0.0666 (10) | |
| O4 | 0.5523 (4) | 0.7822 (6) | 0.7327 (3) | 0.0775 (12) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ag1 | 0.0420 (2) | 0.0623 (3) | 0.02780 (19) | −0.00167 (16) | −0.00078 (13) | −0.00457 (14) |
| C1 | 0.062 (3) | 0.071 (3) | 0.030 (2) | −0.007 (3) | 0.003 (2) | 0.006 (2) |
| C2 | 0.044 (2) | 0.037 (2) | 0.031 (2) | 0.0077 (19) | 0.0058 (18) | 0.0064 (17) |
| C3 | 0.036 (2) | 0.035 (2) | 0.0282 (19) | 0.0065 (17) | 0.0038 (16) | 0.0023 (16) |
| C4 | 0.035 (2) | 0.043 (2) | 0.041 (2) | 0.0017 (19) | −0.0023 (18) | 0.0003 (19) |
| C5 | 0.041 (2) | 0.045 (2) | 0.038 (2) | −0.001 (2) | 0.0064 (19) | 0.0027 (19) |
| C6 | 0.036 (2) | 0.032 (2) | 0.0266 (19) | −0.0052 (17) | 0.0030 (16) | −0.0023 (15) |
| C7 | 0.038 (2) | 0.031 (2) | 0.041 (2) | −0.0037 (18) | 0.0006 (18) | −0.0006 (17) |
| C8 | 0.060 (3) | 0.062 (3) | 0.047 (3) | 0.008 (3) | 0.001 (2) | 0.007 (2) |
| C9 | 0.049 (3) | 0.038 (2) | 0.041 (2) | −0.005 (2) | 0.018 (2) | −0.0107 (19) |
| C10 | 0.045 (2) | 0.037 (2) | 0.032 (2) | −0.004 (2) | 0.0037 (18) | −0.0054 (17) |
| C11 | 0.074 (4) | 0.078 (4) | 0.031 (2) | 0.008 (3) | 0.009 (2) | −0.006 (2) |
| N1 | 0.0344 (17) | 0.0330 (17) | 0.0285 (16) | −0.0038 (14) | 0.0044 (14) | −0.0037 (13) |
| N2 | 0.0432 (19) | 0.047 (2) | 0.0250 (16) | 0.0066 (16) | 0.0074 (14) | 0.0008 (14) |
| N3 | 0.0381 (18) | 0.0430 (19) | 0.0288 (17) | −0.0001 (16) | 0.0050 (14) | −0.0035 (15) |
| N4 | 0.0326 (17) | 0.0402 (19) | 0.0318 (17) | 0.0028 (15) | −0.0010 (14) | 0.0000 (14) |
| N5 | 0.047 (2) | 0.063 (2) | 0.0269 (17) | −0.0130 (19) | 0.0049 (15) | −0.0005 (17) |
| N6 | 0.0416 (19) | 0.0403 (19) | 0.0264 (16) | 0.0019 (16) | 0.0011 (14) | 0.0031 (14) |
| Cl1 | 0.0467 (6) | 0.0444 (6) | 0.0331 (5) | −0.0052 (5) | 0.0068 (4) | 0.0038 (4) |
| O1 | 0.064 (2) | 0.090 (3) | 0.0356 (17) | −0.004 (2) | 0.0119 (16) | 0.0148 (17) |
| O2 | 0.053 (2) | 0.086 (3) | 0.049 (2) | −0.0050 (19) | 0.0193 (16) | 0.0121 (18) |
| O3 | 0.067 (2) | 0.058 (2) | 0.074 (3) | 0.0125 (18) | 0.000 (2) | 0.0080 (19) |
| O4 | 0.092 (3) | 0.077 (3) | 0.063 (2) | −0.031 (2) | −0.001 (2) | −0.007 (2) |
Geometric parameters (Å, °)
| Ag1—N4 | 2.146 (3) | C7—C8 | 1.465 (7) |
| Ag1—N1 | 2.171 (3) | C8—H8A | 0.9600 |
| C1—C2 | 1.479 (6) | C8—H8B | 0.9600 |
| C1—H1A | 0.9600 | C8—H8C | 0.9600 |
| C1—H1B | 0.9600 | C9—C10 | 1.370 (7) |
| C1—H1C | 0.9600 | C9—H9A | 0.9300 |
| C2—N6 | 1.322 (6) | C10—N3 | 1.330 (6) |
| C2—C5 | 1.387 (6) | C10—C11 | 1.487 (6) |
| C3—N5 | 1.330 (6) | C11—H11A | 0.9600 |
| C3—N6 | 1.351 (5) | C11—H11B | 0.9600 |
| C3—N4 | 1.352 (5) | C11—H11C | 0.9600 |
| C4—N4 | 1.347 (6) | N2—H2A | 0.8600 |
| C4—C5 | 1.360 (6) | N2—H2B | 0.8600 |
| C4—H4A | 0.9300 | N5—H5B | 0.8600 |
| C5—H5A | 0.9300 | N5—H5C | 0.8600 |
| C6—N3 | 1.334 (5) | Cl1—O4 | 1.409 (4) |
| C6—N1 | 1.350 (5) | Cl1—O3 | 1.412 (4) |
| C6—N2 | 1.359 (5) | Cl1—O1 | 1.417 (3) |
| C7—N1 | 1.344 (6) | Cl1—O2 | 1.443 (4) |
| C7—C9 | 1.370 (6) | ||
| N4—Ag1—N1 | 174.61 (13) | C7—C9—H9A | 120.6 |
| C2—C1—H1A | 109.5 | C10—C9—H9A | 120.6 |
| C2—C1—H1B | 109.5 | N3—C10—C9 | 121.0 (4) |
| H1A—C1—H1B | 109.5 | N3—C10—C11 | 117.4 (4) |
| C2—C1—H1C | 109.5 | C9—C10—C11 | 121.5 (4) |
| H1A—C1—H1C | 109.5 | C10—C11—H11A | 109.5 |
| H1B—C1—H1C | 109.5 | C10—C11—H11B | 109.5 |
| N6—C2—C5 | 121.4 (4) | H11A—C11—H11B | 109.5 |
| N6—C2—C1 | 117.3 (4) | C10—C11—H11C | 109.5 |
| C5—C2—C1 | 121.3 (4) | H11A—C11—H11C | 109.5 |
| N5—C3—N6 | 116.4 (4) | H11B—C11—H11C | 109.5 |
| N5—C3—N4 | 118.8 (4) | C7—N1—C6 | 116.6 (3) |
| N6—C3—N4 | 124.7 (4) | C7—N1—Ag1 | 121.4 (3) |
| N4—C4—C5 | 122.7 (4) | C6—N1—Ag1 | 121.2 (3) |
| N4—C4—H4A | 118.6 | C6—N2—H2A | 120.0 |
| C5—C4—H4A | 118.6 | C6—N2—H2B | 120.0 |
| C4—C5—C2 | 117.7 (4) | H2A—N2—H2B | 120.0 |
| C4—C5—H5A | 121.1 | C10—N3—C6 | 117.6 (4) |
| C2—C5—H5A | 121.1 | C4—N4—C3 | 115.8 (4) |
| N3—C6—N1 | 124.8 (4) | C4—N4—Ag1 | 116.4 (3) |
| N3—C6—N2 | 116.9 (4) | C3—N4—Ag1 | 127.7 (3) |
| N1—C6—N2 | 118.2 (3) | C3—N5—H5B | 120.0 |
| N1—C7—C9 | 121.1 (4) | C3—N5—H5C | 120.0 |
| N1—C7—C8 | 117.6 (4) | H5B—N5—H5C | 120.0 |
| C9—C7—C8 | 121.3 (4) | C2—N6—C3 | 117.6 (4) |
| C7—C8—H8A | 109.5 | O4—Cl1—O3 | 109.5 (3) |
| C7—C8—H8B | 109.5 | O4—Cl1—O1 | 109.9 (2) |
| H8A—C8—H8B | 109.5 | O3—Cl1—O1 | 111.1 (3) |
| C7—C8—H8C | 109.5 | O4—Cl1—O2 | 107.6 (3) |
| H8A—C8—H8C | 109.5 | O3—Cl1—O2 | 109.0 (3) |
| H8B—C8—H8C | 109.5 | O1—Cl1—O2 | 109.6 (2) |
| C7—C9—C10 | 118.8 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N5—H5C···O4i | 0.86 | 2.32 | 3.131 (5) | 158 |
| N5—H5B···N3ii | 0.86 | 2.20 | 3.050 (5) | 172 |
| N2—H2B···O2 | 0.86 | 2.50 | 3.077 (5) | 126 |
| N2—H2A···N6iii | 0.86 | 2.30 | 3.147 (5) | 169 |
| C1—H1C···O4iv | 0.96 | 2.38 | 3.339 (7) | 177 |
| C4—H4A···O1 | 0.93 | 2.55 | 3.437 (6) | 160 |
| C4—H4A···O2 | 0.93 | 2.59 | 3.396 (6) | 145 |
| C8—H8C···O4i | 0.96 | 2.55 | 3.456 (7) | 157 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+3/2; (ii) x−1/2, −y+1/2, z−1/2; (iii) x+1/2, −y+1/2, z+1/2; (iv) x−1/2, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2621).
References
- Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
- Greenwood, N. N. & Earnshaw, A. (1997). In Chemistry of the Elements, 2nd ed. Oxford: Pergamon Press.
- Munakata, M., Wu, L. P. & Ning, G. L. (2000). Coord. Chem. Rev 198, 171–203.
- Seward, C., Jia, W. L., Wang, R. Y., Enright, G. D. & Wang, S. (2004). Angew. Chem. Int. Ed. Engl.43, 2933–2936. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Shimizu, G. K. H., Enright, G. D., Ratcliffe, C. I., Preston, K. F., Reid, J. L. & Ripmeester, J. A. (1999). Chem. Commun. pp. 1485–1486.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035193/ng2621sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035193/ng2621Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


