Abstract
In the title compound, C12H13ClN2O2, the benzodiazepine ring adopts a distorted boat conformation. The carbonyl O atom and the Cl atom of the chloroacetyl group are in a cis conformation. The crystal packing is controlled by intermolecular C—H⋯O and N—H⋯O interactions.
Related literature
For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶). For the use of benzodiazepines in the treatment of gastrointestinal and central nervous system disorders, see: Rahbaek et al. (1999 ▶).
Experimental
Crystal data
C12H13ClN2O2
M r = 252.69
Monoclinic,
a = 16.7656 (4) Å
b = 8.8171 (2) Å
c = 17.0125 (4) Å
β = 105.803 (1)°
V = 2419.80 (10) Å3
Z = 8
Mo Kα radiation
μ = 0.31 mm−1
T = 293 K
0.30 × 0.25 × 0.20 mm
Data collection
Bruker Kappa APEXII area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.912, T max = 0.940
17051 measured reflections
4087 independent reflections
2835 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.128
S = 1.02
4087 reflections
159 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.30 e Å−3
Δρmin = −0.33 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034813/bt5035sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034813/bt5035Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C4—H4⋯O2 | 0.98 | 2.32 | 2.6952 (17) | 102 |
| N1—H1⋯O1i | 0.881 (18) | 1.958 (18) | 2.8375 (16) | 176.4 (16) |
| C7—H7⋯O2ii | 0.93 | 2.43 | 3.2818 (17) | 153 |
| C14—H14A⋯O1iii | 0.97 | 2.52 | 3.2411 (18) | 131 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
KR thanks Dr Babu Varghese, SAIF, IIT-Madras, India, for his help with the data collection and the management of Kandaswami Kandar’s College, Velur, Namakkal, India, for their encouragement to pursue the programme.
supplementary crystallographic information
Comment
Benzodiazepines are known for their natural occurrence in filamentous fungi and actinomycetes of the genera pencillium, aspergillus and streptomyces. Benzodiazepines from aspergillus include asperlicin, which is used for treatment of gastrointestinal and central nervous system (CNS) disorders (Rahbaek et al.,1999). In view of these importance and to ascertain the molecular conformation, crystallographic study of the title compound has been carried out.
The ORTEP diagram of the title compound is shown in Fig.1. The benzodiazepine ring adopts a distorted boat conformation. The puckering parameters (Cremer & Pople, 1975) and the asymmetry parameters (Nardelli, 1983) for this ring are q2 = 0.965 (1) Å, q3 = 0.155 (1) Å, φ2 = 144.0 (1)°, φ3 = 11.4 (5)° and Δ2(C4)=7.8 (1)°. The sum of the bond angles at N1(359.4°) and N5(359.99°) of the benzodiazepine ring is in accrdance with sp2 hybridization. The choloroacetyl group adopts an extended conformation, which is evidenced from the torsion angle N5—C13—C14—Cl1[-161.9 (1)°].
The crystal packing is controlled by C—H···O and N—H···O types of intra and intermolecular interactions in addition to van der Waals forces. Atom N1 at (x, y, z) donates a proton to O1 (-x + 1, -y, -z + 1), which forms a graph set motif of R22(8) dimer (Bernstein et al., 1995). The intermolecular hydrogen bond C14—H14A···O1 connect the dimers into a C9 one dimensional chain running along c–axis as shown in Fig 2. Thus the two dimensional network is connected by an intermolecular hydrogen bond C7—H7···O2 which leads to a C6 zig–zag chain running along b–axis.
Experimental
To a solution of tetrahydro-4-methyl-1,5-benzodiazepin-2-one (0.88 g, 5 mmol) in anhydrous benzene (50 ml) was added triethylamine (2.8 ml, 20 mmol) and chloroacetyl chloride (1.59 ml, 20 mmol). The contents were allowed to reflux on a water bath for 6hrs. The reaction mixture was washed with sodium bicarbonate solution (10%), water and dried. The crude mass was crystallized from ethanol.
Refinement
The H atom bonded to N was freely refined and the other H atoms were positioned geometrically (C—H=0.93–0.98 Å) and allowed to ride on their parent atoms, with 1.5Ueq(C) for methyl H and 1.2 Ueq(C) for other H atoms.
Figures
Fig. 1.
Perspective view of the molecule showing the thermal ellipsoids are drawn at 50% probability level.
Fig. 2.
The crystal packing of the molecules viewed down b–axis. H atoms not involved in hydrogen bonding have been omitted for clarity.
Crystal data
| C12H13ClN2O2 | F(000) = 1056 |
| Mr = 252.69 | Dx = 1.387 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 3025 reflections |
| a = 16.7656 (4) Å | θ = 2.5–31.7° |
| b = 8.8171 (2) Å | µ = 0.31 mm−1 |
| c = 17.0125 (4) Å | T = 293 K |
| β = 105.803 (1)° | Block, colourless |
| V = 2419.80 (10) Å3 | 0.30 × 0.25 × 0.20 mm |
| Z = 8 |
Data collection
| Bruker Kappa APEXII area-detector diffractometer | 4087 independent reflections |
| Radiation source: fine-focus sealed tube | 2835 reflections with I > 2σ(I) |
| graphite | Rint = 0.026 |
| ω and φ scans | θmax = 31.7°, θmin = 2.5° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −24→24 |
| Tmin = 0.912, Tmax = 0.940 | k = −13→12 |
| 17051 measured reflections | l = −25→23 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0588P)2 + 0.9172P] where P = (Fo2 + 2Fc2)/3 |
| 4087 reflections | (Δ/σ)max = 0.001 |
| 159 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.44292 (4) | −0.22883 (6) | 0.84052 (3) | 0.07928 (19) | |
| O1 | 0.40338 (7) | −0.08925 (12) | 0.45164 (6) | 0.0519 (3) | |
| O2 | 0.31233 (7) | −0.25824 (11) | 0.68948 (6) | 0.0512 (3) | |
| N1 | 0.42899 (7) | 0.08091 (13) | 0.55371 (7) | 0.0417 (2) | |
| H1 | 0.4810 (11) | 0.0878 (19) | 0.5523 (10) | 0.052 (4)* | |
| C2 | 0.37704 (8) | −0.00571 (15) | 0.49681 (7) | 0.0406 (3) | |
| C3 | 0.28614 (8) | 0.00659 (16) | 0.48988 (8) | 0.0422 (3) | |
| H3A | 0.2551 | −0.0382 | 0.4386 | 0.051* | |
| H3B | 0.2711 | 0.1129 | 0.4890 | 0.051* | |
| C4 | 0.26188 (8) | −0.07178 (15) | 0.55987 (8) | 0.0413 (3) | |
| H4 | 0.2691 | −0.1812 | 0.5543 | 0.050* | |
| N5 | 0.31771 (7) | −0.02397 (11) | 0.63873 (6) | 0.0373 (2) | |
| C6 | 0.34684 (8) | 0.12893 (13) | 0.64881 (7) | 0.0361 (2) | |
| C7 | 0.31913 (9) | 0.22890 (15) | 0.69873 (8) | 0.0439 (3) | |
| H7 | 0.2790 | 0.1982 | 0.7238 | 0.053* | |
| C8 | 0.35122 (10) | 0.37389 (16) | 0.71114 (9) | 0.0497 (3) | |
| H8 | 0.3328 | 0.4406 | 0.7447 | 0.060* | |
| C9 | 0.41025 (10) | 0.41982 (16) | 0.67405 (9) | 0.0503 (3) | |
| H9 | 0.4327 | 0.5167 | 0.6837 | 0.060* | |
| C10 | 0.43651 (9) | 0.32312 (16) | 0.62248 (9) | 0.0452 (3) | |
| H10 | 0.4763 | 0.3552 | 0.5973 | 0.054* | |
| C11 | 0.40373 (7) | 0.17797 (14) | 0.60811 (7) | 0.0364 (2) | |
| C12 | 0.17216 (10) | −0.0438 (2) | 0.55670 (11) | 0.0639 (4) | |
| H12A | 0.1588 | −0.0971 | 0.6007 | 0.096* | |
| H12B | 0.1373 | −0.0794 | 0.5055 | 0.096* | |
| H12C | 0.1634 | 0.0629 | 0.5619 | 0.096* | |
| C13 | 0.33861 (8) | −0.12933 (14) | 0.69903 (7) | 0.0377 (3) | |
| C14 | 0.39552 (10) | −0.07538 (17) | 0.77936 (8) | 0.0502 (3) | |
| H14A | 0.3639 | −0.0165 | 0.8085 | 0.060* | |
| H14B | 0.4379 | −0.0100 | 0.7687 | 0.060* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.1088 (4) | 0.0608 (3) | 0.0534 (3) | 0.0146 (2) | −0.0032 (2) | 0.00910 (19) |
| O1 | 0.0638 (6) | 0.0553 (6) | 0.0420 (5) | −0.0034 (5) | 0.0236 (5) | −0.0139 (4) |
| O2 | 0.0711 (7) | 0.0363 (5) | 0.0469 (6) | −0.0094 (4) | 0.0173 (5) | 0.0016 (4) |
| N1 | 0.0455 (6) | 0.0460 (6) | 0.0362 (5) | −0.0005 (5) | 0.0157 (4) | −0.0071 (4) |
| C2 | 0.0535 (7) | 0.0411 (6) | 0.0296 (6) | 0.0012 (5) | 0.0157 (5) | 0.0000 (5) |
| C3 | 0.0510 (7) | 0.0443 (7) | 0.0297 (6) | 0.0010 (5) | 0.0084 (5) | −0.0011 (5) |
| C4 | 0.0514 (7) | 0.0388 (6) | 0.0329 (6) | −0.0055 (5) | 0.0101 (5) | −0.0041 (5) |
| N5 | 0.0521 (6) | 0.0314 (5) | 0.0300 (5) | −0.0039 (4) | 0.0139 (4) | −0.0040 (4) |
| C6 | 0.0473 (6) | 0.0300 (5) | 0.0317 (5) | 0.0003 (4) | 0.0121 (5) | −0.0033 (4) |
| C7 | 0.0547 (7) | 0.0401 (7) | 0.0403 (7) | 0.0036 (5) | 0.0189 (6) | −0.0069 (5) |
| C8 | 0.0658 (9) | 0.0368 (7) | 0.0450 (7) | 0.0071 (6) | 0.0123 (6) | −0.0112 (5) |
| C9 | 0.0611 (8) | 0.0322 (6) | 0.0517 (8) | −0.0038 (6) | 0.0050 (6) | −0.0069 (6) |
| C10 | 0.0495 (7) | 0.0398 (7) | 0.0459 (7) | −0.0057 (5) | 0.0122 (6) | −0.0007 (5) |
| C11 | 0.0430 (6) | 0.0339 (6) | 0.0315 (5) | 0.0020 (5) | 0.0090 (5) | −0.0024 (4) |
| C12 | 0.0541 (9) | 0.0832 (12) | 0.0549 (9) | −0.0114 (8) | 0.0160 (7) | 0.0011 (8) |
| C13 | 0.0491 (6) | 0.0354 (6) | 0.0335 (6) | −0.0010 (5) | 0.0195 (5) | −0.0014 (4) |
| C14 | 0.0695 (9) | 0.0445 (7) | 0.0346 (6) | −0.0015 (6) | 0.0108 (6) | 0.0016 (5) |
Geometric parameters (Å, °)
| Cl1—C14 | 1.7591 (15) | C6—C11 | 1.3913 (17) |
| O1—C2 | 1.2299 (15) | C7—C8 | 1.3808 (19) |
| O2—C13 | 1.2138 (15) | C7—H7 | 0.9300 |
| N1—C2 | 1.3490 (17) | C8—C9 | 1.372 (2) |
| N1—C11 | 1.4077 (15) | C8—H8 | 0.9300 |
| N1—H1 | 0.881 (18) | C9—C10 | 1.379 (2) |
| C2—C3 | 1.5002 (19) | C9—H9 | 0.9300 |
| C3—C4 | 1.5247 (18) | C10—C11 | 1.3880 (18) |
| C3—H3A | 0.9700 | C10—H10 | 0.9300 |
| C3—H3B | 0.9700 | C12—H12A | 0.9600 |
| C4—N5 | 1.4730 (16) | C12—H12B | 0.9600 |
| C4—C12 | 1.511 (2) | C12—H12C | 0.9600 |
| C4—H4 | 0.9800 | C13—C14 | 1.5147 (19) |
| N5—C13 | 1.3573 (16) | C14—H14A | 0.9700 |
| N5—C6 | 1.4283 (15) | C14—H14B | 0.9700 |
| C6—C7 | 1.3888 (16) | ||
| C2—N1—C11 | 124.40 (11) | C9—C8—C7 | 120.19 (13) |
| C2—N1—H1 | 118.0 (11) | C9—C8—H8 | 119.9 |
| C11—N1—H1 | 116.9 (11) | C7—C8—H8 | 119.9 |
| O1—C2—N1 | 121.06 (12) | C8—C9—C10 | 120.36 (13) |
| O1—C2—C3 | 121.61 (12) | C8—C9—H9 | 119.8 |
| N1—C2—C3 | 117.32 (11) | C10—C9—H9 | 119.8 |
| C2—C3—C4 | 112.78 (11) | C9—C10—C11 | 120.17 (13) |
| C2—C3—H3A | 109.0 | C9—C10—H10 | 119.9 |
| C4—C3—H3A | 109.0 | C11—C10—H10 | 119.9 |
| C2—C3—H3B | 109.0 | C10—C11—C6 | 119.41 (11) |
| C4—C3—H3B | 109.0 | C10—C11—N1 | 120.05 (12) |
| H3A—C3—H3B | 107.8 | C6—C11—N1 | 120.53 (11) |
| N5—C4—C12 | 111.43 (11) | C4—C12—H12A | 109.5 |
| N5—C4—C3 | 110.07 (10) | C4—C12—H12B | 109.5 |
| C12—C4—C3 | 111.88 (12) | H12A—C12—H12B | 109.5 |
| N5—C4—H4 | 107.8 | C4—C12—H12C | 109.5 |
| C12—C4—H4 | 107.8 | H12A—C12—H12C | 109.5 |
| C3—C4—H4 | 107.8 | H12B—C12—H12C | 109.5 |
| C13—N5—C6 | 123.09 (10) | O2—C13—N5 | 122.02 (12) |
| C13—N5—C4 | 117.50 (10) | O2—C13—C14 | 122.09 (12) |
| C6—N5—C4 | 119.42 (10) | N5—C13—C14 | 115.88 (11) |
| C7—C6—C11 | 119.74 (11) | C13—C14—Cl1 | 111.36 (10) |
| C7—C6—N5 | 120.80 (11) | C13—C14—H14A | 109.4 |
| C11—C6—N5 | 119.46 (10) | Cl1—C14—H14A | 109.4 |
| C8—C7—C6 | 119.98 (13) | C13—C14—H14B | 109.4 |
| C8—C7—H7 | 120.0 | Cl1—C14—H14B | 109.4 |
| C6—C7—H7 | 120.0 | H14A—C14—H14B | 108.0 |
| C11—N1—C2—O1 | −179.31 (12) | C7—C8—C9—C10 | 1.7 (2) |
| C11—N1—C2—C3 | 1.92 (19) | C8—C9—C10—C11 | −0.4 (2) |
| O1—C2—C3—C4 | 107.11 (14) | C9—C10—C11—C6 | −2.7 (2) |
| N1—C2—C3—C4 | −74.12 (15) | C9—C10—C11—N1 | 178.28 (13) |
| C2—C3—C4—N5 | 49.39 (14) | C7—C6—C11—C10 | 4.55 (19) |
| C2—C3—C4—C12 | 173.86 (12) | N5—C6—C11—C10 | −175.39 (12) |
| C12—C4—N5—C13 | 91.37 (15) | C7—C6—C11—N1 | −176.42 (12) |
| C3—C4—N5—C13 | −143.90 (11) | N5—C6—C11—N1 | 3.64 (18) |
| C12—C4—N5—C6 | −88.25 (14) | C2—N1—C11—C10 | −135.90 (14) |
| C3—C4—N5—C6 | 36.49 (15) | C2—N1—C11—C6 | 45.08 (18) |
| C13—N5—C6—C7 | −69.95 (17) | C6—N5—C13—O2 | 179.08 (12) |
| C4—N5—C6—C7 | 109.65 (14) | C4—N5—C13—O2 | −0.52 (18) |
| C13—N5—C6—C11 | 110.00 (14) | C6—N5—C13—C14 | 0.10 (18) |
| C4—N5—C6—C11 | −70.41 (16) | C4—N5—C13—C14 | −179.51 (11) |
| C11—C6—C7—C8 | −3.4 (2) | O2—C13—C14—Cl1 | 19.10 (18) |
| N5—C6—C7—C8 | 176.59 (13) | N5—C13—C14—Cl1 | −161.92 (10) |
| C6—C7—C8—C9 | 0.2 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C4—H4···O2 | 0.98 | 2.32 | 2.6952 (17) | 102 |
| N1—H1···O1i | 0.881 (18) | 1.958 (18) | 2.8375 (16) | 176.4 (16) |
| C7—H7···O2ii | 0.93 | 2.43 | 3.2818 (17) | 153 |
| C14—H14A···O1iii | 0.97 | 2.52 | 3.2411 (18) | 131 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1/2, y+1/2, −z+3/2; (iii) x, −y, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5035).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Nardelli, M. (1983). Acta Cryst. C39, 1141–1142.
- Rahbaek, L., Breinholt, J., Frisvad, J. C. & Christophersen, C. (1999). J. Org. Chem.64, 1689–1692. [DOI] [PubMed]
- Sheldrick, G. M. (2001). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034813/bt5035sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034813/bt5035Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


