Abstract
In the structure of the title compound, C8H7N5O, the pyridine ring and the imidazole ring are nearly coplanar, making a dihedral angle of 2.97 (15)°. An intramolecular N—H⋯O hydrogen bond occurs. In the crystal molecules are connected by intermolecular hydrogen bonds and π–π stacking interactions between neighboring imidazole rings [centroid–centroid distance = 3.5842 (5) Å and off-set angle = 21.77°], leading to the formation of a two-dimensional supramolecular sheet.
Related literature
For an alternative preparative method for the title compound, see: Browne & Polya (1968 ▶). For the potential bioinorganic applications of 1,2,4-triazole derivatives, see: Bohm & Karow (1981 ▶); Bahel et al. (1984 ▶).
Experimental
Crystal data
C8H7N5O
M r = 189.19
Monoclinic,
a = 8.6906 (17) Å
b = 5.2854 (10) Å
c = 17.880 (4) Å
β = 90.700 (3)°
V = 821.2 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.11 mm−1
T = 273 K
0.26 × 0.24 × 0.18 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.972, T max = 0.980
3938 measured reflections
1443 independent reflections
961 reflections with I > 2σ(I)
R int = 0.095
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.106
S = 1.00
1443 reflections
128 parameters
H-atom parameters constrained
Δρmax = 0.17 e Å−3
Δρmin = −0.16 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041269/ez2185sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041269/ez2185Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H21⋯N3i | 0.88 | 2.09 | 2.946 (2) | 164 |
| N4—H41⋯O1ii | 0.86 | 2.06 | 2.873 (2) | 158 |
| N4—H41⋯O1 | 0.86 | 2.17 | 2.629 (2) | 113 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
We gratefully acknowledge the financial support of the Guangxi Natural Science Foundation (No. 0991008) and the Innovation Project of Guangxi Graduate Education (2009106020703M43), China.
supplementary crystallographic information
Comment
1,2,4-Triazoles derivatives represent an interesting class of heterocycles. They present various potential applications in bioinorganic chemistry (Bohm & Karow, 1981; Bahel, et al., 1984). The preparation of the title compound has been reported previously (Browne & Polya, 1968), but its crystal structure has not yet been reported. Thus we report here the structure (Fig. 1) of the title compound obtained using an alternative method.
The pyridine ring and the imidazole ring are nearly co-planar with a dihedral angle of 2.97 (15)°. An intramolecular N—H···O hydrogen bond is present in the molecule. Adjacent molecules are connected alternatively by intermolecular N—H···N and N—H···O hydrogen bonds into one dimensional supramolecular chains (Fig. 2). The neighboring imidazole rings from adjacent one dimensional chains are parallel to each other with a perpendicular distance of 3.3285 (1) Å, a centroid-to-centroid distance of 3.5842 (5) Å and an off-set angle of 21.774° (calculated as the angle formed by the line through the two centroids of the two imidazole rings and the normal of the imidazole plane). This indicates the presence of a π–π stacking interaction between the neighboring imidazole rings from adjacent one dimensional chains, which leads to the construction of a two dimensional supramolecular sheet (Fig. 2).
Experimental
A mixture of 1,2-di-2-pyridyl-ethane-dione (0.2122 g, 1 mmol), 5-amino-1,2,4-triazole (0.1682 g, 2 mmol) and methanol (20 ml) was refluxed at 343 K for three hours. It was then filtered and the filtrate was left at ambient temperature to evaporate for three days, yielding crystals of the product. The overall yield is 70%. Elemental analysis for C8H7N5, calculated: C 55.48, H 4.07, N 40.44%; found: C 55.12, H 4.35, N 40.82%.
Refinement
H atoms on the N atoms were located in an electron density map and and allowed to ride on the N atoms with Uiso(H) = 1.5Ueq(N). H atoms on the carbon atoms were placed at calculated positions (C–H = 0.93 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound with the atom-numbering scheme and 30% displacement ellipsoids.
Fig. 2.
A view of the two-dimensional supramolecular sheet assembled by hydrogen bonds and π–π stacking interactions (indicated by dashed lines).
Crystal data
| C8H7N5O | F(000) = 392 |
| Mr = 189.19 | Dx = 1.530 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 1623 reflections |
| a = 8.6906 (17) Å | θ = 3.0–28.0° |
| b = 5.2854 (10) Å | µ = 0.11 mm−1 |
| c = 17.880 (4) Å | T = 273 K |
| β = 90.700 (3)° | Block, colorless |
| V = 821.2 (3) Å3 | 0.26 × 0.24 × 0.18 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 1443 independent reflections |
| Radiation source: fine-focus sealed tube | 961 reflections with I > 2σ(I) |
| graphite | Rint = 0.095 |
| φ and ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −8→10 |
| Tmin = 0.972, Tmax = 0.980 | k = −6→5 |
| 3938 measured reflections | l = −21→21 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
| wR(F2) = 0.106 | w = 1/[σ2(Fo2) + (0.0259P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 1443 reflections | Δρmax = 0.17 e Å−3 |
| 128 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.024 (3) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.6956 (2) | 0.7443 (3) | 0.35815 (9) | 0.0470 (5) | |
| N2 | 0.77449 (17) | 0.4023 (3) | 0.46730 (8) | 0.0410 (5) | |
| H21 | 0.8406 | 0.5181 | 0.4539 | 0.061* | |
| C5 | 0.5911 (2) | 0.5707 (4) | 0.37611 (10) | 0.0389 (5) | |
| C6 | 0.6318 (2) | 0.3877 (4) | 0.43697 (10) | 0.0391 (5) | |
| N4 | 0.74724 (18) | 0.0445 (3) | 0.54961 (8) | 0.0438 (5) | |
| H41 | 0.6579 | −0.0130 | 0.5370 | 0.066* | |
| N5 | 0.83128 (19) | −0.0771 (3) | 0.60411 (9) | 0.0481 (5) | |
| N3 | 0.96153 (18) | 0.2595 (3) | 0.55752 (9) | 0.0454 (5) | |
| C3 | 0.4141 (3) | 0.7178 (5) | 0.28387 (12) | 0.0529 (7) | |
| H3 | 0.3198 | 0.7083 | 0.2589 | 0.063* | |
| C4 | 0.4492 (2) | 0.5512 (4) | 0.34098 (11) | 0.0478 (6) | |
| H4 | 0.3789 | 0.4286 | 0.3555 | 0.057* | |
| C1 | 0.6574 (3) | 0.9042 (4) | 0.30331 (12) | 0.0547 (6) | |
| H1 | 0.7281 | 1.0284 | 0.2905 | 0.066* | |
| C7 | 0.8255 (2) | 0.2395 (4) | 0.52329 (11) | 0.0380 (5) | |
| C2 | 0.5196 (3) | 0.8965 (5) | 0.26449 (12) | 0.0534 (7) | |
| H2 | 0.4990 | 1.0104 | 0.2260 | 0.064* | |
| C8 | 0.9568 (2) | 0.0599 (4) | 0.60561 (11) | 0.0490 (6) | |
| H8 | 1.0385 | 0.0229 | 0.6379 | 0.059* | |
| O1 | 0.53795 (16) | 0.2298 (3) | 0.45747 (8) | 0.0520 (5) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0448 (11) | 0.0521 (13) | 0.0439 (10) | −0.0024 (9) | −0.0056 (8) | 0.0052 (10) |
| N2 | 0.0348 (10) | 0.0466 (12) | 0.0414 (10) | −0.0067 (8) | −0.0051 (8) | 0.0074 (9) |
| C5 | 0.0382 (12) | 0.0424 (13) | 0.0360 (11) | 0.0004 (10) | −0.0015 (9) | −0.0021 (10) |
| C6 | 0.0346 (11) | 0.0436 (14) | 0.0390 (12) | −0.0060 (10) | −0.0031 (9) | −0.0033 (10) |
| N4 | 0.0371 (10) | 0.0510 (13) | 0.0431 (10) | −0.0086 (9) | −0.0042 (8) | 0.0068 (9) |
| N5 | 0.0419 (10) | 0.0541 (13) | 0.0481 (10) | −0.0055 (10) | −0.0077 (8) | 0.0132 (9) |
| N3 | 0.0391 (10) | 0.0500 (12) | 0.0469 (10) | −0.0077 (9) | −0.0092 (8) | 0.0089 (9) |
| C3 | 0.0490 (14) | 0.0611 (18) | 0.0482 (13) | 0.0082 (12) | −0.0150 (11) | −0.0033 (12) |
| C4 | 0.0438 (13) | 0.0529 (15) | 0.0465 (13) | −0.0028 (11) | −0.0065 (10) | −0.0015 (11) |
| C1 | 0.0580 (15) | 0.0517 (16) | 0.0542 (14) | −0.0055 (12) | −0.0027 (11) | 0.0127 (12) |
| C7 | 0.0320 (11) | 0.0441 (14) | 0.0379 (11) | −0.0058 (10) | −0.0014 (9) | −0.0008 (10) |
| C2 | 0.0620 (16) | 0.0542 (17) | 0.0439 (12) | 0.0088 (13) | −0.0074 (11) | 0.0059 (12) |
| C8 | 0.0438 (13) | 0.0582 (16) | 0.0447 (13) | −0.0034 (12) | −0.0128 (10) | 0.0109 (12) |
| O1 | 0.0390 (9) | 0.0594 (11) | 0.0574 (10) | −0.0141 (8) | −0.0100 (7) | 0.0117 (8) |
Geometric parameters (Å, °)
| N1—C5 | 1.333 (2) | N5—C8 | 1.309 (3) |
| N1—C1 | 1.333 (3) | N3—C7 | 1.329 (2) |
| N2—C6 | 1.349 (2) | N3—C8 | 1.362 (2) |
| N2—C7 | 1.388 (2) | C3—C2 | 1.364 (3) |
| N2—H21 | 0.8751 | C3—C4 | 1.379 (3) |
| C5—C4 | 1.381 (3) | C3—H3 | 0.9300 |
| C5—C6 | 1.495 (3) | C4—H4 | 0.9300 |
| C6—O1 | 1.226 (2) | C1—C2 | 1.377 (3) |
| N4—C7 | 1.324 (2) | C1—H1 | 0.9300 |
| N4—N5 | 1.371 (2) | C2—H2 | 0.9300 |
| N4—H41 | 0.8612 | C8—H8 | 0.9300 |
| C5—N1—C1 | 116.71 (19) | C4—C3—H3 | 120.4 |
| C6—N2—C7 | 122.55 (17) | C3—C4—C5 | 118.5 (2) |
| C6—N2—H21 | 122.2 | C3—C4—H4 | 120.7 |
| C7—N2—H21 | 115.2 | C5—C4—H4 | 120.7 |
| N1—C5—C4 | 123.29 (19) | N1—C1—C2 | 124.0 (2) |
| N1—C5—C6 | 117.68 (18) | N1—C1—H1 | 118.0 |
| C4—C5—C6 | 119.02 (19) | C2—C1—H1 | 118.0 |
| O1—C6—N2 | 122.01 (19) | N4—C7—N3 | 110.85 (18) |
| O1—C6—C5 | 120.34 (18) | N4—C7—N2 | 125.30 (17) |
| N2—C6—C5 | 117.65 (18) | N3—C7—N2 | 123.85 (18) |
| C7—N4—N5 | 110.26 (16) | C3—C2—C1 | 118.4 (2) |
| C7—N4—H41 | 130.3 | C3—C2—H2 | 120.8 |
| N5—N4—H41 | 119.4 | C1—C2—H2 | 120.8 |
| C8—N5—N4 | 101.06 (17) | N5—C8—N3 | 116.56 (18) |
| C7—N3—C8 | 101.28 (17) | N5—C8—H8 | 121.7 |
| C2—C3—C4 | 119.1 (2) | N3—C8—H8 | 121.7 |
| C2—C3—H3 | 120.4 | ||
| C1—N1—C5—C4 | 0.0 (3) | C5—N1—C1—C2 | −1.0 (3) |
| C1—N1—C5—C6 | 179.44 (19) | N5—N4—C7—N3 | −0.1 (2) |
| C7—N2—C6—O1 | 0.4 (3) | N5—N4—C7—N2 | 179.57 (17) |
| C7—N2—C6—C5 | −178.98 (17) | C8—N3—C7—N4 | 0.3 (2) |
| N1—C5—C6—O1 | 177.46 (18) | C8—N3—C7—N2 | −179.40 (19) |
| C4—C5—C6—O1 | −3.1 (3) | C6—N2—C7—N4 | 4.8 (3) |
| N1—C5—C6—N2 | −3.1 (3) | C6—N2—C7—N3 | −175.51 (19) |
| C4—C5—C6—N2 | 176.30 (17) | C4—C3—C2—C1 | −0.4 (3) |
| C7—N4—N5—C8 | −0.1 (2) | N1—C1—C2—C3 | 1.2 (4) |
| C2—C3—C4—C5 | −0.5 (3) | N4—N5—C8—N3 | 0.3 (2) |
| N1—C5—C4—C3 | 0.7 (3) | C7—N3—C8—N5 | −0.4 (2) |
| C6—C5—C4—C3 | −178.68 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H21···N3i | 0.88 | 2.09 | 2.946 (2) | 164 |
| N4—H41···O1ii | 0.86 | 2.06 | 2.873 (2) | 158 |
| N4—H41···O1 | 0.86 | 2.17 | 2.629 (2) | 113 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: EZ2185).
References
- Bahel, S. C., Dubey, B. L., Nath, N. & Srivastava, J. K. (1984). Inorg. Chim. Acta, 91, L43–L45.
- Bohm, R. & Karow, C. (1981). Pharmazie, 4, 243–247. [PubMed]
- Browne, E. J. & Polya, J. B. (1968). J. Chem. Soc. (C), 23, 2904–2908.
- Bruker (1998). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041269/ez2185sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041269/ez2185Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


