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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Oct 10;65(Pt 11):o2671. doi: 10.1107/S1600536809039373

Ethyl 7-chloro­methyl-5-(2-chloro­phen­yl)-7-hydr­oxy-2-methyl­sulfanyl-4,5,6,7-tetra­hydro-1,2,4-triazolo[1,5-a]pyrimidine-6-carboxyl­ate

Shao-wei Huang a,*
PMCID: PMC2971018  PMID: 21578280

Abstract

In the title compound, C16H18Cl2N4O3S, the five-membered ring is almost planar [maximum deviation = 0.011 (3) Å] and the six-membered ring adopts an envelope conformation. In the crystal structure, N—H⋯N, O—H⋯N and C—H⋯O inter­actions link mol­ecules into a three-dimensional network.

Related literature

For general background to tetra­hydro triazolo[1,5-a]pyrimi­dine derivatives as potential biologically active compounds, see: Pryadeina et al. (2004). For related structures, see: Chen et al. (2005); Hu et al. (2005). For bond-length data, see: Allen et al. (1987).graphic file with name e-65-o2671-scheme1.jpg

Experimental

Crystal data

  • C16H18Cl2N4O3S

  • M r = 417.30

  • Triclinic, Inline graphic

  • a = 8.4534 (14) Å

  • b = 10.5082 (17) Å

  • c = 12.0846 (19) Å

  • α = 66.660 (3)°

  • β = 79.519 (3)°

  • γ = 84.795 (3)°

  • V = 969.0 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.47 mm−1

  • T = 292 K

  • 0.30 × 0.20 × 0.10 mm

Data collection

  • Bruker SMART 4K CCD diffractometer

  • Absorption correction: none

  • 6772 measured reflections

  • 3759 independent reflections

  • 2661 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.053

  • wR(F 2) = 0.141

  • S = 1.08

  • 3759 reflections

  • 249 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039373/hb5113sup1.cif

e-65-o2671-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039373/hb5113Isup2.hkl

e-65-o2671-Isup2.hkl (184.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯N4i 0.93 (3) 2.04 (3) 2.969 (3) 172 (2)
O3—H3A⋯N3ii 0.77 (3) 2.05 (3) 2.806 (3) 170 (3)
C16—H16A⋯O3ii 0.96 2.47 3.290 (4) 143

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the National Natural Science Foundation of China (grant No. 20702018).

supplementary crystallographic information

Comment

In recent years, tetrahydro triazolo1,5-a]pyrimidine derivatives nave attracted interest as potential biologically active compounds (Pryadeina et al., 2004). In this paper, we present the structure of one such analogue, the title compound, (I) (Fig. 1), in which the bond lengths (Allen et al., 1987) and angles are within normal ranges.

The bicyclic triazolopyrimidine system is not on the same plane because they can not form a conjugated system. Ring A (N2-4/C14-15) is close to planarity with a maximum deviation of 0.011Å for C15. Rng B (N1-2/C7-8/C12/C14) dopt envelope conformations with atom C8 displaced by 0.333 (3) Å from the plane of the other ring atoms. The dihedral angle between the Ring (C1-C6) and the ring A is 51.86°.

In the crystal structure, weak N-H···N, O-H···N and C-H···O interactions link the molecules into a three-dimensional network (Fig. 2).

Experimental

A solution of 4-chloro acetylacetic ester (1 mmol), 2-chloro benzaldehyde (1 mmol), and 3-amino-5-methylthio-1,2,4-triazole (1mmol) in water (3 ml) containing a catalytic amount of TSA was heated under 353 K for 10 h. The resulting mixture was extracted with CH2Cl2 and the extra was dried over sodium sulfate, filtered, the filtrate was condensed under reduced pressure and the residue was purified by chromatography on SiO2 to afford the title compound. Colourless blocks of (I) were grown from an acetone solution at 293K. 1H NMR (CDCl3, 400 MHz): σ 7.03-7.40(m, 4 H), 6.42(s, 1H), 4.99(d, 1H), 4.35(d, 1H), 4.00(q,2 H), 3.91(d, 1H), 3.05(d, 1H), 2.35(s, 3H), 1.03(t,3H).

Refinement

The N- and O-bound H atoms were located in a difference map and freely refined with fixed isotropic displacement parameters. All other H atoms were positioned geometrically, with C-H = 0.93, 0.97 and 0.96 Å for aromatic, methylene and methyl H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A partial packing diagram of (I). Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Crystal data

C16H18Cl2N4O3S Z = 2
Mr = 417.30 F(000) = 432
Triclinic, P1 Dx = 1.430 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.4534 (14) Å Cell parameters from 2018 reflections
b = 10.5082 (17) Å θ = 2.5–24.1°
c = 12.0846 (19) Å µ = 0.47 mm1
α = 66.660 (3)° T = 292 K
β = 79.519 (3)° Block, colourless
γ = 84.795 (3)° 0.30 × 0.20 × 0.10 mm
V = 969.0 (3) Å3

Data collection

Bruker SMART 4K CCD diffractometer 2661 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.025
graphite θmax = 26.0°, θmin = 1.9°
φ and ω scans h = −10→10
6772 measured reflections k = −12→12
3759 independent reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141 H atoms treated by a mixture of independent and constrained refinement
S = 1.08 w = 1/[σ2(Fo2) + (0.07P)2] where P = (Fo2 + 2Fc2)/3
3759 reflections (Δ/σ)max = 0.001
249 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.68839 (13) 0.60065 (10) 0.98954 (7) 0.0933 (4)
Cl2 0.60921 (11) 0.36582 (8) 0.66235 (7) 0.0709 (3)
S1 1.08176 (11) 0.90864 (8) 0.17205 (6) 0.0681 (3)
C1 0.6041 (4) 0.7582 (3) 0.9073 (2) 0.0571 (8)
C2 0.4887 (4) 0.8210 (4) 0.9701 (3) 0.0747 (10)
H2 0.4601 0.7782 1.0543 0.090*
C3 0.4181 (4) 0.9457 (4) 0.9068 (3) 0.0775 (11)
H3 0.3413 0.9870 0.9483 0.093*
C4 0.4602 (4) 1.0087 (3) 0.7840 (3) 0.0684 (9)
H4 0.4126 1.0933 0.7415 0.082*
C5 0.5738 (3) 0.9472 (3) 0.7221 (2) 0.0510 (7)
H5 0.6018 0.9919 0.6380 0.061*
C6 0.6471 (3) 0.8217 (3) 0.7812 (2) 0.0414 (6)
C7 0.7640 (3) 0.7517 (2) 0.7107 (2) 0.0382 (6)
H7 0.835 (3) 0.694 (3) 0.758 (2) 0.046*
C8 0.6777 (3) 0.6492 (2) 0.6789 (2) 0.0351 (5)
H8 0.645 (3) 0.574 (2) 0.755 (2) 0.042*
C9 0.5292 (3) 0.7157 (3) 0.6256 (2) 0.0441 (6)
C10 0.2503 (4) 0.7571 (4) 0.6852 (3) 0.0809 (11)
H10A 0.1955 0.7190 0.6417 0.097*
H10B 0.2709 0.8541 0.6349 0.097*
C11 0.1517 (4) 0.7428 (4) 0.8024 (3) 0.0821 (11)
H11A 0.1188 0.6484 0.8461 0.123*
H11B 0.0582 0.8025 0.7881 0.123*
H11C 0.2133 0.7680 0.8496 0.123*
C12 0.7963 (3) 0.5897 (2) 0.5979 (2) 0.0369 (6)
C13 0.7175 (3) 0.5062 (3) 0.5449 (2) 0.0461 (6)
H13A 0.7998 0.4709 0.4964 0.055*
H13B 0.6449 0.5662 0.4916 0.055*
C14 0.8996 (3) 0.8292 (2) 0.5003 (2) 0.0395 (6)
C15 0.9936 (3) 0.8369 (3) 0.3248 (2) 0.0441 (6)
C16 1.0255 (5) 0.7895 (3) 0.1151 (3) 0.0830 (11)
H16A 1.0832 0.7033 0.1477 0.125*
H16B 1.0510 0.8271 0.0276 0.125*
H16C 0.9119 0.7740 0.1392 0.125*
N1 0.8465 (3) 0.8568 (2) 0.59986 (19) 0.0461 (6)
H1 0.894 (3) 0.929 (3) 0.608 (2) 0.055*
N2 0.8708 (3) 0.7083 (2) 0.49519 (17) 0.0410 (5)
N3 0.9342 (3) 0.7110 (2) 0.37947 (17) 0.0417 (5)
N4 0.9794 (3) 0.9135 (2) 0.39433 (17) 0.0441 (5)
O1 0.5267 (3) 0.7939 (2) 0.52207 (17) 0.0682 (6)
O2 0.4005 (2) 0.6814 (2) 0.71234 (18) 0.0611 (6)
O3 0.9120 (2) 0.51348 (18) 0.66938 (16) 0.0448 (5)
H3A 0.953 (4) 0.458 (3) 0.647 (3) 0.067*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.1212 (8) 0.0852 (7) 0.0451 (5) −0.0024 (6) −0.0173 (5) 0.0064 (4)
Cl2 0.0932 (6) 0.0500 (5) 0.0662 (5) −0.0327 (4) −0.0159 (4) −0.0111 (4)
S1 0.1055 (7) 0.0475 (5) 0.0361 (4) −0.0024 (4) 0.0124 (4) −0.0101 (3)
C1 0.073 (2) 0.0615 (19) 0.0356 (14) −0.0172 (16) 0.0008 (14) −0.0183 (13)
C2 0.084 (2) 0.101 (3) 0.0403 (16) −0.028 (2) 0.0177 (16) −0.0353 (18)
C3 0.078 (2) 0.087 (3) 0.081 (2) −0.019 (2) 0.020 (2) −0.056 (2)
C4 0.068 (2) 0.0568 (19) 0.084 (2) −0.0057 (16) 0.0090 (18) −0.0391 (17)
C5 0.0643 (18) 0.0407 (16) 0.0465 (15) −0.0049 (14) 0.0028 (13) −0.0194 (12)
C6 0.0477 (15) 0.0436 (15) 0.0343 (13) −0.0110 (12) 0.0024 (11) −0.0184 (11)
C7 0.0433 (15) 0.0344 (13) 0.0332 (12) −0.0019 (11) −0.0027 (11) −0.0104 (10)
C8 0.0390 (14) 0.0291 (12) 0.0315 (12) −0.0017 (10) −0.0041 (10) −0.0063 (10)
C9 0.0513 (16) 0.0398 (15) 0.0434 (15) 0.0048 (12) −0.0119 (13) −0.0179 (12)
C10 0.052 (2) 0.107 (3) 0.089 (3) 0.030 (2) −0.0287 (18) −0.043 (2)
C11 0.051 (2) 0.096 (3) 0.109 (3) 0.0175 (19) −0.021 (2) −0.051 (2)
C12 0.0450 (14) 0.0256 (12) 0.0385 (13) −0.0016 (10) −0.0073 (11) −0.0102 (10)
C13 0.0582 (17) 0.0355 (14) 0.0434 (14) −0.0058 (12) −0.0109 (12) −0.0117 (11)
C14 0.0477 (15) 0.0316 (13) 0.0369 (13) −0.0033 (11) 0.0007 (11) −0.0136 (10)
C15 0.0556 (16) 0.0331 (14) 0.0355 (13) 0.0054 (12) 0.0031 (11) −0.0107 (11)
C16 0.141 (3) 0.067 (2) 0.0378 (16) 0.008 (2) −0.0113 (18) −0.0201 (15)
N1 0.0583 (14) 0.0386 (12) 0.0421 (12) −0.0177 (11) 0.0107 (10) −0.0208 (10)
N2 0.0537 (13) 0.0327 (11) 0.0351 (11) −0.0054 (10) 0.0035 (9) −0.0150 (8)
N3 0.0580 (14) 0.0316 (11) 0.0339 (11) 0.0016 (10) −0.0019 (9) −0.0138 (9)
N4 0.0567 (14) 0.0328 (11) 0.0374 (11) −0.0029 (10) 0.0074 (10) −0.0137 (9)
O1 0.0783 (15) 0.0711 (14) 0.0463 (12) 0.0242 (12) −0.0219 (10) −0.0138 (10)
O2 0.0390 (11) 0.0711 (14) 0.0615 (12) 0.0076 (10) −0.0113 (9) −0.0140 (10)
O3 0.0513 (11) 0.0359 (10) 0.0513 (11) 0.0109 (8) −0.0149 (9) −0.0207 (8)

Geometric parameters (Å, °)

Cl1—C1 1.725 (3) C10—O2 1.454 (3)
Cl2—C13 1.773 (2) C10—C11 1.465 (5)
S1—C15 1.740 (2) C10—H10A 0.9700
S1—C16 1.783 (4) C10—H10B 0.9700
C1—C6 1.392 (3) C11—H11A 0.9600
C1—C2 1.404 (4) C11—H11B 0.9600
C2—C3 1.374 (5) C11—H11C 0.9600
C2—H2 0.9300 C12—O3 1.401 (3)
C3—C4 1.356 (4) C12—N2 1.456 (3)
C3—H3 0.9300 C12—C13 1.526 (3)
C4—C5 1.381 (4) C13—H13A 0.9700
C4—H4 0.9300 C13—H13B 0.9700
C5—C6 1.378 (4) C14—N4 1.332 (3)
C5—H5 0.9300 C14—N1 1.337 (3)
C6—C7 1.517 (4) C14—N2 1.342 (3)
C7—N1 1.458 (3) C15—N3 1.321 (3)
C7—C8 1.554 (3) C15—N4 1.360 (3)
C7—H7 0.92 (3) C16—H16A 0.9600
C8—C9 1.502 (3) C16—H16B 0.9600
C8—C12 1.539 (3) C16—H16C 0.9600
C8—H8 0.96 (2) N1—H1 0.93 (3)
C9—O1 1.198 (3) N2—N3 1.393 (3)
C9—O2 1.329 (3) O3—H3A 0.77 (3)
C15—S1—C16 101.76 (14) C10—C11—H11A 109.5
C6—C1—C2 120.3 (3) C10—C11—H11B 109.5
C6—C1—Cl1 121.1 (2) H11A—C11—H11B 109.5
C2—C1—Cl1 118.6 (2) C10—C11—H11C 109.5
C3—C2—C1 119.9 (3) H11A—C11—H11C 109.5
C3—C2—H2 120.0 H11B—C11—H11C 109.5
C1—C2—H2 120.0 O3—C12—N2 109.8 (2)
C4—C3—C2 120.2 (3) O3—C12—C13 113.3 (2)
C4—C3—H3 119.9 N2—C12—C13 107.02 (19)
C2—C3—H3 119.9 O3—C12—C8 105.82 (18)
C3—C4—C5 120.0 (3) N2—C12—C8 106.35 (18)
C3—C4—H4 120.0 C13—C12—C8 114.3 (2)
C5—C4—H4 120.0 C12—C13—Cl2 111.07 (17)
C6—C5—C4 122.1 (3) C12—C13—H13A 109.4
C6—C5—H5 119.0 Cl2—C13—H13A 109.4
C4—C5—H5 119.0 C12—C13—H13B 109.4
C5—C6—C1 117.5 (2) Cl2—C13—H13B 109.4
C5—C6—C7 121.2 (2) H13A—C13—H13B 108.0
C1—C6—C7 121.2 (2) N4—C14—N1 127.2 (2)
N1—C7—C6 109.5 (2) N4—C14—N2 110.8 (2)
N1—C7—C8 110.5 (2) N1—C14—N2 121.9 (2)
C6—C7—C8 111.7 (2) N3—C15—N4 116.1 (2)
N1—C7—H7 112.1 (16) N3—C15—S1 124.2 (2)
C6—C7—H7 111.0 (16) N4—C15—S1 119.66 (19)
C8—C7—H7 101.9 (16) S1—C16—H16A 109.5
C9—C8—C12 113.9 (2) S1—C16—H16B 109.5
C9—C8—C7 110.8 (2) H16A—C16—H16B 109.5
C12—C8—C7 110.40 (19) S1—C16—H16C 109.5
C9—C8—H8 108.1 (15) H16A—C16—H16C 109.5
C12—C8—H8 107.5 (14) H16B—C16—H16C 109.5
C7—C8—H8 105.7 (14) C14—N1—C7 120.7 (2)
O1—C9—O2 124.5 (3) C14—N1—H1 118.2 (17)
O1—C9—C8 125.5 (3) C7—N1—H1 117.4 (16)
O2—C9—C8 109.9 (2) C14—N2—N3 109.23 (18)
O2—C10—C11 107.0 (3) C14—N2—C12 124.9 (2)
O2—C10—H10A 110.3 N3—N2—C12 125.74 (19)
C11—C10—H10A 110.3 C15—N3—N2 101.43 (19)
O2—C10—H10B 110.3 C14—N4—C15 102.3 (2)
C11—C10—H10B 110.3 C9—O2—C10 118.2 (2)
H10A—C10—H10B 108.6 C12—O3—H3A 111 (2)
C6—C1—C2—C3 −0.1 (5) N2—C12—C13—Cl2 −175.47 (17)
Cl1—C1—C2—C3 −179.3 (3) C8—C12—C13—Cl2 −58.0 (2)
C1—C2—C3—C4 −0.4 (5) C16—S1—C15—N3 12.5 (3)
C2—C3—C4—C5 0.3 (5) C16—S1—C15—N4 −165.8 (2)
C3—C4—C5—C6 0.3 (5) N4—C14—N1—C7 −178.5 (2)
C4—C5—C6—C1 −0.7 (4) N2—C14—N1—C7 4.3 (4)
C4—C5—C6—C7 176.2 (3) C6—C7—N1—C14 −151.3 (2)
C2—C1—C6—C5 0.6 (4) C8—C7—N1—C14 −27.9 (3)
Cl1—C1—C6—C5 179.8 (2) N4—C14—N2—N3 −0.1 (3)
C2—C1—C6—C7 −176.3 (3) N1—C14—N2—N3 177.5 (2)
Cl1—C1—C6—C7 2.8 (4) N4—C14—N2—C12 175.4 (2)
C5—C6—C7—N1 30.3 (3) N1—C14—N2—C12 −7.0 (4)
C1—C6—C7—N1 −152.8 (2) O3—C12—N2—C14 −82.2 (3)
C5—C6—C7—C8 −92.4 (3) C13—C12—N2—C14 154.4 (2)
C1—C6—C7—C8 84.5 (3) C8—C12—N2—C14 31.9 (3)
N1—C7—C8—C9 −74.3 (3) O3—C12—N2—N3 92.6 (3)
C6—C7—C8—C9 47.9 (3) C13—C12—N2—N3 −30.8 (3)
N1—C7—C8—C12 52.8 (3) C8—C12—N2—N3 −153.3 (2)
C6—C7—C8—C12 175.02 (19) N4—C15—N3—N2 1.9 (3)
C12—C8—C9—O1 −45.3 (3) S1—C15—N3—N2 −176.39 (19)
C7—C8—C9—O1 79.9 (3) C14—N2—N3—C15 −1.1 (3)
C12—C8—C9—O2 138.4 (2) C12—N2—N3—C15 −176.5 (2)
C7—C8—C9—O2 −96.4 (2) N1—C14—N4—C15 −176.3 (3)
C9—C8—C12—O3 −170.66 (19) N2—C14—N4—C15 1.2 (3)
C7—C8—C12—O3 64.0 (2) N3—C15—N4—C14 −2.0 (3)
C9—C8—C12—N2 72.6 (2) S1—C15—N4—C14 176.38 (19)
C7—C8—C12—N2 −52.8 (2) O1—C9—O2—C10 −8.7 (4)
C9—C8—C12—C13 −45.3 (3) C8—C9—O2—C10 167.6 (3)
C7—C8—C12—C13 −170.64 (19) C11—C10—O2—C9 −157.3 (3)
O3—C12—C13—Cl2 63.3 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···N4i 0.93 (3) 2.04 (3) 2.969 (3) 172 (2)
O3—H3A···N3ii 0.77 (3) 2.05 (3) 2.806 (3) 170 (3)
C16—H16A···O3ii 0.96 2.47 3.290 (4) 143

Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5113).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039373/hb5113sup1.cif

e-65-o2671-sup1.cif (20.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039373/hb5113Isup2.hkl

e-65-o2671-Isup2.hkl (184.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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