Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Oct 23;65(Pt 11):o2848. doi: 10.1107/S1600536809043220

Bis(2,6-dicarboxy­pyridinium) dichloride acetone monosolvate

Cuong Quoc Ton a, Michael Bolte b,*
PMCID: PMC2971198  PMID: 21578437

Abstract

The title compound, 2C7H6NO4 +·2Cl·C3H6O, crystallizes with two 2,6-dicarboxy­pyridinium cations, two chloride anions and one acetone mol­ecule in the asymmetric unit. The crystal structure is characterized by alternating cations and by Cl anions, forming zigzag chains running along the a axis.

Related literature

For co-crystallization experiments, see: Ton & Bolte (2005); Tutughamiarso et al. (2009).graphic file with name e-65-o2848-scheme1.jpg

Experimental

Crystal data

  • 2C7H6NO4 +·2Cl·C3H6O

  • M r = 465.23

  • Monoclinic, Inline graphic

  • a = 21.108 (4) Å

  • b = 6.7877 (14) Å

  • c = 15.224 (3) Å

  • β = 110.28 (3)°

  • V = 2046.0 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.37 mm−1

  • T = 173 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Stoe IPDSII two-circle diffractometer

  • Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) T min = 0.897, T max = 0.930

  • 27731 measured reflections

  • 3867 independent reflections

  • 3412 reflections with I > 2σ(I)

  • R int = 0.041

Refinement

  • R[F 2 > 2σ(F 2)] = 0.028

  • wR(F 2) = 0.082

  • S = 1.07

  • 3867 reflections

  • 277 parameters

  • 2 restraints

  • H-atom parameters constrained

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043220/ng2671sup1.cif

e-65-o2848-sup1.cif (20.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043220/ng2671Isup2.hkl

e-65-o2848-Isup2.hkl (189.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯Cl2i 0.84 2.11 2.9469 (13) 171
O3—H3⋯Cl1ii 0.84 2.14 2.9727 (13) 172
O12—H12⋯Cl1 0.84 2.13 2.9696 (15) 179
O14—H14⋯Cl2 0.84 2.14 2.9775 (12) 177
N1—H1N⋯O30iii 0.88 2.42 3.277 (2) 166
N1—H1N⋯O2 0.88 2.34 2.6685 (16) 103
N1—H1N⋯O4 0.88 2.39 2.7195 (16) 103
N2—H2N⋯O11 0.88 2.25 2.6365 (17) 106
N2—H2N⋯O13 0.88 2.26 2.6392 (16) 106

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

The aim of our research is the cocrystallization of two small organic compounds in order to examine the hydrogen bonds formed between hydrogen-bond acceptors and hydrogen-bond donors (Ton & Bolte, 2005; Tutughamiarso et al., 2009). When pyridine-2,6-dicarbonyl dichlorid and resorcinol were mixed in order to obtain a hydrogen bonded supermolecular complex, it turned out that the pyridine-2,6-dicarbonyl dichlorid had been hydrolyzed to the dicarboxylic acid. The title compound crystallizes with two 2,6-dicarboxypyridinium cations, two chloride anions and one acetone molecule in the asymmetric unit. The crystal structure is characterized by alternating cations and by Cl- anions forming zigzag chains running along the a axis. The amino H atoms do not form intermolecular hydrogen bonds, but show short distances to the O atoms of the adjacent carboxyl groups.

Experimental

Pyridine-2,6-dicarbonyl dichlorid (20 mg) and resorcinol (20 mg) were dissolved in 2 ml absolute acetone. The mixture was sealed and set aside at room temperature. After two weeks small block-shaped crystals were obtained. It turned out that the pyridine-2,6-dicarbonyl dichloride had been hydrolyzed to the dicarboxylic acid.

Refinement

Hydrogen atoms were located in a difference Fourier map but they were included in calculated positions [N—H = 0.88 Å, C—H = 0.93 - 0.99 Å] and refined as riding [Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(O,Cmethyl)].

Figures

Fig. 1.

Fig. 1.

A view of the molecular structure of the title compound, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

Part of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines.

Crystal data

2C7H6NO4+·2Cl·C3H6O F(000) = 960
Mr = 465.23 Dx = 1.510 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4736 reflections
a = 21.108 (4) Å θ = 3.6–23.9°
b = 6.7877 (14) Å µ = 0.37 mm1
c = 15.224 (3) Å T = 173 K
β = 110.28 (3)° Block, colourless
V = 2046.0 (7) Å3 0.30 × 0.20 × 0.20 mm
Z = 4

Data collection

Stoe IPDSII two-circle diffractometer 3867 independent reflections
Radiation source: fine-focus sealed tube 3412 reflections with I > 2σ(I)
graphite Rint = 0.041
ω scans θmax = 25.7°, θmin = 2.7°
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) h = −25→25
Tmin = 0.897, Tmax = 0.930 k = −8→8
27731 measured reflections l = −18→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0611P)2] where P = (Fo2 + 2Fc2)/3
3867 reflections (Δ/σ)max = 0.001
277 parameters Δρmax = 0.17 e Å3
2 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl2 0.400074 (15) 0.86812 (5) 0.57272 (2) 0.02093 (10)
N1 0.86727 (6) 0.62429 (16) 0.08751 (8) 0.0176 (2)
H1N 0.8461 0.6094 0.0269 0.021*
O1 0.72464 (5) 0.5375 (2) 0.15456 (8) 0.0373 (3)
O2 0.74328 (5) 0.47101 (18) 0.02079 (7) 0.0314 (3)
H2 0.7020 0.4421 0.0003 0.047*
O3 1.02593 (5) 0.77466 (16) 0.07980 (7) 0.0269 (2)
H3 1.0420 0.7892 0.0369 0.040*
O4 0.93315 (5) 0.66689 (17) −0.03641 (7) 0.0312 (3)
C1 0.93284 (6) 0.67693 (19) 0.11849 (9) 0.0185 (3)
C2 0.96772 (7) 0.6960 (2) 0.21350 (10) 0.0225 (3)
H2A 1.0144 0.7289 0.2358 0.027*
C3 0.93390 (8) 0.6665 (2) 0.27580 (10) 0.0259 (3)
H3A 0.9572 0.6793 0.3413 0.031*
C4 0.86538 (7) 0.6179 (2) 0.24171 (10) 0.0234 (3)
H4 0.8412 0.6016 0.2835 0.028*
C5 0.83310 (7) 0.59365 (19) 0.14648 (9) 0.0194 (3)
C6 0.76021 (7) 0.5313 (2) 0.10756 (10) 0.0224 (3)
C7 0.96393 (7) 0.7065 (2) 0.04423 (9) 0.0210 (3)
C11 0.55437 (6) 0.66485 (18) 0.39734 (9) 0.0170 (3)
C12 0.52686 (7) 0.65541 (19) 0.30102 (9) 0.0194 (3)
H12A 0.4804 0.6830 0.2695 0.023*
C13 0.56847 (7) 0.6047 (2) 0.25084 (9) 0.0220 (3)
H13 0.5505 0.6010 0.1844 0.026*
C14 0.63629 (7) 0.5591 (2) 0.29749 (9) 0.0202 (3)
H14A 0.6647 0.5235 0.2635 0.024*
C15 0.66136 (6) 0.56671 (19) 0.39429 (9) 0.0173 (3)
C16 0.73154 (6) 0.51806 (19) 0.45933 (9) 0.0201 (3)
C17 0.51949 (6) 0.71815 (19) 0.46516 (9) 0.0189 (3)
N2 0.62003 (6) 0.62153 (15) 0.43989 (7) 0.0162 (2)
H2N 0.6370 0.6296 0.5014 0.019*
O11 0.74741 (5) 0.55571 (16) 0.54219 (7) 0.0281 (2)
O12 0.76850 (5) 0.43135 (16) 0.41724 (7) 0.0260 (2)
H12 0.8064 0.4033 0.4568 0.039*
O13 0.54906 (5) 0.69891 (16) 0.54842 (7) 0.0269 (2)
O14 0.45750 (5) 0.78176 (16) 0.42371 (7) 0.0244 (2)
H14 0.4400 0.8075 0.4643 0.037*
O30 0.77087 (6) 0.63026 (17) 0.86620 (9) 0.0391 (3)
C31 0.81624 (8) 0.4065 (2) 0.78336 (11) 0.0325 (3)
H31A 0.8598 0.4523 0.8271 0.049*
H31B 0.8139 0.4325 0.7190 0.049*
H31C 0.8118 0.2646 0.7917 0.049*
C32 0.76014 (7) 0.5135 (2) 0.80203 (11) 0.0271 (3)
C33 0.68937 (8) 0.4701 (3) 0.73731 (13) 0.0398 (4)
H33A 0.6597 0.4538 0.7741 0.060*
H33B 0.6893 0.3488 0.7024 0.060*
H33C 0.6730 0.5797 0.6933 0.060*
Cl1 0.903216 (16) 0.33503 (5) 0.55619 (2) 0.02480 (11)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl2 0.01679 (17) 0.02369 (18) 0.02316 (18) 0.00153 (11) 0.00802 (13) 0.00127 (12)
N1 0.0179 (5) 0.0192 (5) 0.0153 (5) 0.0008 (4) 0.0052 (4) −0.0010 (4)
O1 0.0271 (6) 0.0621 (8) 0.0297 (6) −0.0071 (5) 0.0188 (5) −0.0038 (5)
O2 0.0185 (5) 0.0508 (7) 0.0265 (6) −0.0076 (5) 0.0098 (4) −0.0110 (5)
O3 0.0157 (5) 0.0409 (6) 0.0248 (5) −0.0049 (4) 0.0080 (4) −0.0054 (4)
O4 0.0253 (5) 0.0496 (7) 0.0185 (5) −0.0122 (5) 0.0074 (4) −0.0023 (4)
C1 0.0176 (6) 0.0170 (6) 0.0206 (7) 0.0017 (5) 0.0064 (5) −0.0001 (5)
C2 0.0196 (6) 0.0250 (7) 0.0207 (7) 0.0006 (5) 0.0042 (5) −0.0020 (5)
C3 0.0285 (7) 0.0303 (7) 0.0164 (7) 0.0018 (6) 0.0047 (6) −0.0015 (5)
C4 0.0275 (7) 0.0262 (7) 0.0191 (7) 0.0017 (5) 0.0115 (6) 0.0005 (5)
C5 0.0215 (7) 0.0174 (6) 0.0214 (7) 0.0026 (5) 0.0100 (5) 0.0012 (5)
C6 0.0222 (7) 0.0246 (7) 0.0222 (7) 0.0008 (5) 0.0101 (5) 0.0018 (5)
C7 0.0179 (6) 0.0233 (7) 0.0215 (7) −0.0013 (5) 0.0065 (5) −0.0008 (5)
C11 0.0175 (6) 0.0152 (6) 0.0188 (6) −0.0004 (5) 0.0071 (5) −0.0003 (5)
C12 0.0192 (6) 0.0187 (6) 0.0184 (6) −0.0003 (5) 0.0039 (5) 0.0011 (5)
C13 0.0278 (7) 0.0220 (7) 0.0156 (6) −0.0015 (5) 0.0070 (5) 0.0001 (5)
C14 0.0242 (7) 0.0201 (6) 0.0194 (6) −0.0006 (5) 0.0117 (5) −0.0003 (5)
C15 0.0186 (6) 0.0146 (6) 0.0202 (6) −0.0011 (5) 0.0087 (5) −0.0005 (5)
C16 0.0196 (6) 0.0196 (6) 0.0219 (7) 0.0005 (5) 0.0082 (5) −0.0003 (5)
C17 0.0178 (6) 0.0201 (7) 0.0193 (6) 0.0007 (5) 0.0071 (5) −0.0005 (5)
N2 0.0176 (5) 0.0174 (5) 0.0132 (5) 0.0004 (4) 0.0047 (4) −0.0013 (4)
O11 0.0214 (5) 0.0392 (6) 0.0211 (5) 0.0048 (4) 0.0038 (4) −0.0057 (4)
O12 0.0197 (5) 0.0340 (6) 0.0248 (5) 0.0084 (4) 0.0083 (4) 0.0002 (4)
O13 0.0241 (5) 0.0399 (6) 0.0174 (5) 0.0069 (4) 0.0081 (4) −0.0004 (4)
O14 0.0188 (5) 0.0342 (6) 0.0217 (5) 0.0062 (4) 0.0091 (4) 0.0019 (4)
O30 0.0382 (6) 0.0362 (6) 0.0452 (7) −0.0022 (5) 0.0175 (5) −0.0108 (5)
C31 0.0323 (8) 0.0324 (8) 0.0326 (8) 0.0014 (6) 0.0111 (7) −0.0022 (7)
C32 0.0305 (7) 0.0229 (7) 0.0288 (8) −0.0012 (6) 0.0115 (6) 0.0049 (6)
C33 0.0292 (8) 0.0443 (10) 0.0429 (10) 0.0012 (7) 0.0087 (7) −0.0006 (8)
Cl1 0.01629 (17) 0.02919 (19) 0.0289 (2) 0.00156 (12) 0.00780 (14) −0.00016 (13)

Geometric parameters (Å, °)

N1—C1 1.3467 (17) C13—C14 1.394 (2)
N1—C5 1.3484 (18) C13—H13 0.9500
N1—H1N 0.8800 C14—C15 1.3834 (19)
O1—C6 1.2040 (18) C14—H14A 0.9500
O2—C6 1.3087 (18) C15—N2 1.3421 (17)
O2—H2 0.8400 C15—C16 1.5057 (18)
O3—C7 1.3147 (17) C16—O11 1.2149 (17)
O3—H3 0.8400 C16—O12 1.3085 (17)
O4—C7 1.2036 (17) C17—O13 1.2103 (17)
C1—C2 1.3829 (19) C17—O14 1.3132 (16)
C1—C7 1.5045 (19) N2—H2N 0.8800
C2—C3 1.385 (2) O12—H12 0.8400
C2—H2A 0.9500 O14—H14 0.8400
C3—C4 1.396 (2) O30—C32 1.2167 (19)
C3—H3A 0.9500 C31—C32 1.498 (2)
C4—C5 1.381 (2) C31—H31A 0.9800
C4—H4 0.9500 C31—H31B 0.9800
C5—C6 1.5052 (19) C31—H31C 0.9800
C11—N2 1.3433 (17) C32—C33 1.506 (2)
C11—C12 1.3790 (19) C33—H33A 0.9800
C11—C17 1.5052 (18) C33—H33B 0.9800
C12—C13 1.392 (2) C33—H33C 0.9800
C12—H12A 0.9500
C1—N1—C5 121.98 (11) C14—C13—H13 119.8
C1—N1—H1N 119.0 C15—C14—C13 118.71 (12)
C5—N1—H1N 119.0 C15—C14—H14A 120.6
C6—O2—H2 109.5 C13—C14—H14A 120.6
C7—O3—H3 109.5 N2—C15—C14 118.96 (12)
N1—C1—C2 120.07 (13) N2—C15—C16 112.85 (11)
N1—C1—C7 115.80 (12) C14—C15—C16 128.19 (12)
C2—C1—C7 124.11 (12) O11—C16—O12 127.34 (12)
C1—C2—C3 119.26 (13) O11—C16—C15 119.41 (12)
C1—C2—H2A 120.4 O12—C16—C15 113.22 (12)
C3—C2—H2A 120.4 O13—C17—O14 127.23 (12)
C2—C3—C4 119.53 (13) O13—C17—C11 119.68 (12)
C2—C3—H3A 120.2 O14—C17—C11 113.10 (11)
C4—C3—H3A 120.2 C15—N2—C11 123.93 (11)
C5—C4—C3 119.25 (13) C15—N2—H2N 118.0
C5—C4—H4 120.4 C11—N2—H2N 118.0
C3—C4—H4 120.4 C16—O12—H12 109.5
N1—C5—C4 119.83 (12) C17—O14—H14 109.5
N1—C5—C6 119.40 (12) C32—C31—H31A 109.5
C4—C5—C6 120.77 (13) C32—C31—H31B 109.5
O1—C6—O2 127.04 (13) H31A—C31—H31B 109.5
O1—C6—C5 121.27 (13) C32—C31—H31C 109.5
O2—C6—C5 111.69 (12) H31A—C31—H31C 109.5
O4—C7—O3 127.38 (13) H31B—C31—H31C 109.5
O4—C7—C1 120.99 (12) O30—C32—C31 121.94 (14)
O3—C7—C1 111.63 (12) O30—C32—C33 121.25 (15)
N2—C11—C12 119.10 (12) C31—C32—C33 116.81 (14)
N2—C11—C17 112.96 (11) C32—C33—H33A 109.5
C12—C11—C17 127.94 (12) C32—C33—H33B 109.5
C11—C12—C13 118.80 (12) H33A—C33—H33B 109.5
C11—C12—H12A 120.6 C32—C33—H33C 109.5
C13—C12—H12A 120.6 H33A—C33—H33C 109.5
C12—C13—C14 120.46 (12) H33B—C33—H33C 109.5
C12—C13—H13 119.8
C5—N1—C1—C2 1.76 (19) N2—C11—C12—C13 −1.17 (19)
C5—N1—C1—C7 −179.77 (12) C17—C11—C12—C13 179.30 (12)
N1—C1—C2—C3 −2.1 (2) C11—C12—C13—C14 1.71 (19)
C7—C1—C2—C3 179.60 (13) C12—C13—C14—C15 −0.4 (2)
C1—C2—C3—C4 0.1 (2) C13—C14—C15—N2 −1.37 (19)
C2—C3—C4—C5 2.1 (2) C13—C14—C15—C16 177.90 (12)
C1—N1—C5—C4 0.54 (19) N2—C15—C16—O11 −9.64 (18)
C1—N1—C5—C6 −178.85 (11) C14—C15—C16—O11 171.05 (13)
C3—C4—C5—N1 −2.5 (2) N2—C15—C16—O12 168.43 (11)
C3—C4—C5—C6 176.92 (12) C14—C15—C16—O12 −10.9 (2)
N1—C5—C6—O1 −166.16 (14) N2—C11—C17—O13 −7.56 (18)
C4—C5—C6—O1 14.5 (2) C12—C11—C17—O13 172.00 (13)
N1—C5—C6—O2 14.67 (18) N2—C11—C17—O14 172.82 (11)
C4—C5—C6—O2 −164.72 (13) C12—C11—C17—O14 −7.62 (19)
N1—C1—C7—O4 −6.70 (19) C14—C15—N2—C11 2.01 (19)
C2—C1—C7—O4 171.71 (14) C16—C15—N2—C11 −177.37 (11)
N1—C1—C7—O3 174.26 (11) C12—C11—N2—C15 −0.71 (19)
C2—C1—C7—O3 −7.33 (19) C17—C11—N2—C15 178.89 (11)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O2—H2···Cl2i 0.84 2.11 2.9469 (13) 171
O3—H3···Cl1ii 0.84 2.14 2.9727 (13) 172
O12—H12···Cl1 0.84 2.13 2.9696 (15) 179
O14—H14···Cl2 0.84 2.14 2.9775 (12) 177
N1—H1N···O30iii 0.88 2.42 3.277 (2) 166
N1—H1N···O2 0.88 2.34 2.6685 (16) 103
N1—H1N···O4 0.88 2.39 2.7195 (16) 103
N2—H2N···O11 0.88 2.25 2.6365 (17) 106
N2—H2N···O13 0.88 2.26 2.6392 (16) 106

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+2, y+1/2, −z+1/2; (iii) x, y, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2671).

References

  1. Blessing, R. H. (1995). Acta Cryst. A51, 33–38. [DOI] [PubMed]
  2. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  3. Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
  4. Stoe & Cie (2001). X-AREA Stoe & Cie, Darmstadt, Germany.
  5. Ton, Q. C. & Bolte, M. (2005). Acta Cryst. E61, o1406–o1407.
  6. Tutughamiarso, M., Bolte, M. & Egert, E. (2009). Acta Cryst. C65, o574–o578. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043220/ng2671sup1.cif

e-65-o2848-sup1.cif (20.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043220/ng2671Isup2.hkl

e-65-o2848-Isup2.hkl (189.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES