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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Nov 25;65(Pt 12):o3213. doi: 10.1107/S1600536809049836

2-Methyl-2,4-di-4-pyridyl-2,3-dihydro-1H-1,5-benzodiazepine acetic acid solvate

Shi-Chao Wang a, Qiu-Fei Hou a, Shi-Mei Jiang a,*
PMCID: PMC2971997  PMID: 21578921

Abstract

In the title compound, C20H18N4·CH3COOH, the benzene ring forms dihedral angles of 81.34 (11) and 54.32 (11)° with the two pyridine rings. In the crystal, inter­molecular O—H⋯N hydrogen bonding links one 1,5-benzodiazepine mol­ecule and one acetic acid solvent mol­ecule into a dimer. These dimers, related by translation along the b axis, are further linked into chains via weak inter­molecular N—H⋯N hydrogen bonds.

Related literature

For details of the synthesis and a related compound, see Hou et al. (2007).graphic file with name e-65-o3213-scheme1.jpg

Experimental

Crystal data

  • C20H18N4·C2H4O2

  • M r = 374.44

  • Triclinic, Inline graphic

  • a = 8.925 (6) Å

  • b = 10.172 (8) Å

  • c = 12.283 (9) Å

  • α = 68.56 (3)°

  • β = 75.41 (3)°

  • γ = 88.52 (3)°

  • V = 1001.8 (12) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 290 K

  • 0.11 × 0.10 × 0.09 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.991, T max = 0.993

  • 9946 measured reflections

  • 4547 independent reflections

  • 2400 reflections with I > 2σ(I)

  • R int = 0.039

Refinement

  • R[F 2 > 2σ(F 2)] = 0.064

  • wR(F 2) = 0.211

  • S = 1.04

  • 4547 reflections

  • 256 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.36 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049836/cv2662sup1.cif

e-65-o3213-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049836/cv2662Isup2.hkl

e-65-o3213-Isup2.hkl (222.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯N4i 0.86 2.23 3.079 (4) 172
O2—H2B⋯N3ii 0.82 1.83 2.640 (4) 168

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the National Natural Science Foundation of China (grant No. 20874038) and the National Basic Research Program of China (grant No. 2007CB936402).

supplementary crystallographic information

Comment

The title compound (I) was unexpectedly obtained during our study of the Schiff base bis-pyridine complex (Hou et al., 2007). In this paper, we report its crystal structure.

In (I) (Fig.1), the dihedral angles between benzene ring and two pyridine rings are 81.34 (11) ° and 54.32 (11) °, respectively. In the crystal structure, the intramolecular O—H···N and intermolecule N—H···N hydrogen bonds (Table 1) are observed.

Experimental

The title compound and its single crystals suitable for the X-ray diffraction were prepared by slow evaporation of the ethanol solution which contains o-phenylenediamine, 4-acetylpyridine and a small amount of acetic acid at room temperatue.

Refinement

All H atoms were placed in calculated positions (C—H 0.93 - 0.97 Å, N—H 0.86 Å, O—H 0.82 Å), and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2 or 1.5 Ueq of the parent atom.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound showing the atomic numbering. Displacement ellipsoids of non-H atoms are drawn at the 30% probability level.

Crystal data

C20H18N4·C2H4O2 Z = 2
Mr = 374.44 F(000) = 396
Triclinic, P1 Dx = 1.241 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.925 (6) Å Cell parameters from 6051 reflections
b = 10.172 (8) Å θ = 3.1–27.5°
c = 12.283 (9) Å µ = 0.08 mm1
α = 68.56 (3)° T = 290 K
β = 75.41 (3)° Block, colourless
γ = 88.52 (3)° 0.11 × 0.10 × 0.09 mm
V = 1001.8 (12) Å3

Data collection

Rigaku R-AXIS RAPID diffractometer 4547 independent reflections
Radiation source: fine-focus sealed tube 2400 reflections with I > 2σ(I)
graphite Rint = 0.039
ω scans θmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) h = −11→11
Tmin = 0.991, Tmax = 0.993 k = −13→13
9946 measured reflections l = −15→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.211 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.1067P)2 + 0.0338P] where P = (Fo2 + 2Fc2)/3
4547 reflections (Δ/σ)max < 0.001
256 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.36 e Å3

Special details

Experimental. (See detailed section in the paper)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2037 (3) 0.2500 (2) 1.0826 (2) 0.0436 (6)
C2 0.1293 (3) 0.2017 (3) 1.2065 (3) 0.0533 (7)
H2 0.0990 0.2679 1.2422 0.064*
C3 0.0993 (3) 0.0601 (3) 1.2775 (3) 0.0603 (7)
H3 0.0519 0.0310 1.3600 0.072*
C4 0.1407 (3) −0.0376 (3) 1.2242 (3) 0.0598 (8)
H4 0.1206 −0.1338 1.2707 0.072*
C5 0.2111 (3) 0.0060 (2) 1.1037 (3) 0.0545 (7)
H5 0.2379 −0.0623 1.0698 0.065*
C6 0.2455 (3) 0.1504 (2) 1.0273 (2) 0.0448 (6)
C7 0.3831 (3) 0.3117 (2) 0.8120 (2) 0.0456 (6)
C8 0.5137 (3) 0.2748 (3) 0.7236 (3) 0.0616 (8)
H8A 0.5878 0.2247 0.7652 0.092*
H8B 0.5639 0.3603 0.6590 0.092*
H8C 0.4717 0.2163 0.6907 0.092*
C9 0.2688 (3) 0.3983 (2) 0.7451 (2) 0.0476 (6)
C10 0.1148 (4) 0.3542 (3) 0.7753 (3) 0.0701 (9)
H10 0.0750 0.2681 0.8374 0.084*
C11 0.0187 (4) 0.4432 (4) 0.7092 (4) 0.0911 (12)
H11 −0.0858 0.4136 0.7294 0.109*
C12 0.2161 (5) 0.6063 (4) 0.5942 (3) 0.0795 (10)
H12 0.2526 0.6934 0.5325 0.095*
C13 0.3180 (4) 0.5278 (3) 0.6521 (3) 0.0652 (8)
H13 0.4216 0.5614 0.6290 0.078*
C14 0.4524 (3) 0.4008 (2) 0.8686 (2) 0.0458 (6)
H14A 0.5078 0.3404 0.9244 0.055*
H14B 0.5263 0.4741 0.8050 0.055*
C15 0.3307 (3) 0.4680 (2) 0.9343 (2) 0.0400 (5)
C16 0.3302 (3) 0.6249 (2) 0.8930 (2) 0.0409 (5)
C17 0.4648 (3) 0.7133 (2) 0.8320 (2) 0.0468 (6)
H17 0.5584 0.6766 0.8080 0.056*
C18 0.4577 (3) 0.8567 (2) 0.8072 (3) 0.0533 (7)
H18 0.5499 0.9139 0.7690 0.064*
C19 0.1991 (3) 0.8327 (3) 0.8883 (3) 0.0587 (7)
H19 0.1058 0.8733 0.9053 0.070*
C20 0.1949 (3) 0.6889 (3) 0.9202 (3) 0.0534 (7)
H20 0.1013 0.6344 0.9601 0.064*
C21 0.6804 (5) 0.8687 (5) 0.4824 (4) 0.1079 (15)
H21A 0.5708 0.8432 0.5084 0.162*
H21B 0.7133 0.9067 0.3955 0.162*
H21C 0.7025 0.9387 0.5126 0.162*
C22 0.7639 (4) 0.7424 (4) 0.5294 (3) 0.0768 (10)
N1 0.2212 (2) 0.39891 (19) 1.02797 (19) 0.0445 (5)
N2 0.3101 (3) 0.1793 (2) 0.9066 (2) 0.0551 (6)
H2A 0.3069 0.1093 0.8836 0.066*
N3 0.0682 (4) 0.5654 (3) 0.6210 (3) 0.0836 (9)
N4 0.3286 (3) 0.9185 (2) 0.8342 (2) 0.0556 (6)
O1 0.7070 (3) 0.6287 (3) 0.6004 (3) 0.1032 (9)
O2 0.9124 (3) 0.7674 (3) 0.5022 (3) 0.1017 (9)
H2B 0.9495 0.7015 0.5469 0.153*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0418 (12) 0.0344 (12) 0.0494 (14) −0.0018 (10) −0.0064 (11) −0.0128 (10)
C2 0.0505 (14) 0.0459 (14) 0.0580 (17) −0.0008 (11) −0.0022 (13) −0.0207 (12)
C3 0.0594 (16) 0.0541 (16) 0.0506 (16) −0.0054 (13) −0.0016 (13) −0.0082 (13)
C4 0.0639 (17) 0.0381 (13) 0.0614 (18) −0.0055 (12) −0.0059 (15) −0.0063 (12)
C5 0.0593 (16) 0.0318 (12) 0.0657 (18) 0.0025 (11) −0.0113 (14) −0.0136 (12)
C6 0.0443 (13) 0.0330 (11) 0.0535 (15) 0.0023 (10) −0.0088 (12) −0.0145 (10)
C7 0.0493 (13) 0.0320 (11) 0.0527 (14) 0.0030 (10) −0.0068 (12) −0.0167 (10)
C8 0.0634 (17) 0.0520 (15) 0.0663 (18) 0.0084 (13) −0.0006 (15) −0.0295 (14)
C9 0.0530 (15) 0.0407 (12) 0.0531 (15) 0.0034 (11) −0.0099 (12) −0.0247 (11)
C10 0.0612 (18) 0.0599 (17) 0.089 (2) 0.0034 (14) −0.0206 (17) −0.0266 (16)
C11 0.065 (2) 0.099 (3) 0.125 (3) 0.009 (2) −0.034 (2) −0.053 (3)
C12 0.089 (3) 0.074 (2) 0.073 (2) 0.0165 (19) −0.028 (2) −0.0203 (17)
C13 0.0704 (19) 0.0555 (16) 0.0571 (17) 0.0060 (14) −0.0128 (15) −0.0090 (13)
C14 0.0445 (13) 0.0332 (11) 0.0576 (15) 0.0035 (10) −0.0088 (12) −0.0175 (11)
C15 0.0426 (12) 0.0310 (11) 0.0477 (13) 0.0001 (9) −0.0107 (11) −0.0166 (10)
C16 0.0439 (12) 0.0337 (11) 0.0467 (13) 0.0007 (9) −0.0102 (11) −0.0178 (10)
C17 0.0439 (13) 0.0386 (12) 0.0554 (15) −0.0006 (10) −0.0055 (12) −0.0193 (11)
C18 0.0523 (15) 0.0373 (13) 0.0640 (17) −0.0072 (11) −0.0067 (13) −0.0167 (12)
C19 0.0472 (14) 0.0398 (13) 0.090 (2) 0.0043 (11) −0.0119 (14) −0.0291 (14)
C20 0.0448 (13) 0.0366 (12) 0.0772 (19) −0.0015 (10) −0.0091 (13) −0.0235 (12)
C21 0.094 (3) 0.110 (3) 0.105 (3) 0.022 (2) −0.039 (3) −0.015 (3)
C22 0.0560 (18) 0.089 (2) 0.081 (2) −0.0001 (17) −0.0146 (17) −0.028 (2)
N1 0.0446 (11) 0.0336 (10) 0.0524 (12) 0.0004 (8) −0.0069 (10) −0.0163 (9)
N2 0.0783 (15) 0.0291 (10) 0.0525 (13) −0.0022 (10) −0.0052 (12) −0.0163 (9)
N3 0.104 (2) 0.0753 (19) 0.083 (2) 0.0293 (17) −0.0411 (19) −0.0328 (16)
N4 0.0589 (13) 0.0346 (10) 0.0743 (16) 0.0030 (10) −0.0151 (12) −0.0228 (10)
O1 0.0889 (18) 0.0776 (17) 0.108 (2) −0.0144 (14) 0.0036 (16) −0.0122 (16)
O2 0.0828 (17) 0.097 (2) 0.094 (2) −0.0047 (14) −0.0226 (15) 0.0014 (15)

Geometric parameters (Å, °)

C1—C2 1.400 (4) C12—C13 1.358 (4)
C1—C6 1.408 (4) C12—H12 0.9300
C1—N1 1.409 (3) C13—H13 0.9300
C2—C3 1.375 (4) C14—C15 1.491 (3)
C2—H2 0.9300 C14—H14A 0.9700
C3—C4 1.373 (4) C14—H14B 0.9700
C3—H3 0.9300 C15—N1 1.284 (3)
C4—C5 1.360 (4) C15—C16 1.488 (3)
C4—H4 0.9300 C16—C20 1.381 (4)
C5—C6 1.415 (3) C16—C17 1.387 (3)
C5—H5 0.9300 C17—C18 1.380 (3)
C6—N2 1.370 (4) C17—H17 0.9300
C7—N2 1.452 (3) C18—N4 1.325 (3)
C7—C8 1.522 (4) C18—H18 0.9300
C7—C9 1.529 (3) C19—N4 1.334 (3)
C7—C14 1.546 (4) C19—C20 1.368 (4)
C8—H8A 0.9600 C19—H19 0.9300
C8—H8B 0.9600 C20—H20 0.9300
C8—H8C 0.9600 C21—C22 1.471 (5)
C9—C10 1.371 (4) C21—H21A 0.9600
C9—C13 1.382 (4) C21—H21B 0.9600
C10—C11 1.410 (5) C21—H21C 0.9600
C10—H10 0.9300 C22—O1 1.194 (4)
C11—N3 1.309 (5) C22—O2 1.290 (4)
C11—H11 0.9300 N2—H2A 0.8600
C12—N3 1.317 (5) O2—H2B 0.8200
C2—C1—C6 119.0 (2) C12—C13—H13 119.8
C2—C1—N1 112.7 (2) C9—C13—H13 119.8
C6—C1—N1 128.2 (2) C15—C14—C7 112.2 (2)
C3—C2—C1 122.5 (3) C15—C14—H14A 109.2
C3—C2—H2 118.7 C7—C14—H14A 109.2
C1—C2—H2 118.7 C15—C14—H14B 109.2
C4—C3—C2 118.7 (3) C7—C14—H14B 109.2
C4—C3—H3 120.6 H14A—C14—H14B 107.9
C2—C3—H3 120.6 N1—C15—C16 115.3 (2)
C5—C4—C3 120.2 (2) N1—C15—C14 124.3 (2)
C5—C4—H4 119.9 C16—C15—C14 120.4 (2)
C3—C4—H4 119.9 C20—C16—C17 116.8 (2)
C4—C5—C6 123.1 (3) C20—C16—C15 120.8 (2)
C4—C5—H5 118.4 C17—C16—C15 122.3 (2)
C6—C5—H5 118.5 C18—C17—C16 119.0 (2)
N2—C6—C1 126.6 (2) C18—C17—H17 120.5
N2—C6—C5 116.9 (2) C16—C17—H17 120.5
C1—C6—C5 116.5 (2) N4—C18—C17 124.4 (2)
N2—C7—C8 107.2 (2) N4—C18—H18 117.8
N2—C7—C9 112.2 (2) C17—C18—H18 117.8
C8—C7—C9 109.8 (2) N4—C19—C20 124.1 (2)
N2—C7—C14 109.4 (2) N4—C19—H19 117.9
C8—C7—C14 109.2 (2) C20—C19—H19 117.9
C9—C7—C14 108.97 (19) C19—C20—C16 119.8 (2)
C7—C8—H8A 109.5 C19—C20—H20 120.1
C7—C8—H8B 109.5 C16—C20—H20 120.1
H8A—C8—H8B 109.5 C22—C21—H21A 109.5
C7—C8—H8C 109.5 C22—C21—H21B 109.5
H8A—C8—H8C 109.5 H21A—C21—H21B 109.5
H8B—C8—H8C 109.5 C22—C21—H21C 109.5
C10—C9—C13 117.3 (3) H21A—C21—H21C 109.5
C10—C9—C7 122.5 (2) H21B—C21—H21C 109.5
C13—C9—C7 120.2 (2) O1—C22—O2 118.9 (3)
C9—C10—C11 117.9 (3) O1—C22—C21 126.4 (4)
C9—C10—H10 121.0 O2—C22—C21 113.9 (3)
C11—C10—H10 121.0 C15—N1—C1 123.9 (2)
N3—C11—C10 123.7 (3) C6—N2—C7 129.0 (2)
N3—C11—H11 118.1 C6—N2—H2A 115.5
C10—C11—H11 118.1 C7—N2—H2A 115.5
N3—C12—C13 123.3 (3) C11—N3—C12 117.4 (3)
N3—C12—H12 118.3 C18—N4—C19 115.8 (2)
C13—C12—H12 118.3 C22—O2—H2B 109.5
C12—C13—C9 120.4 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2A···N4i 0.86 2.23 3.079 (4) 172
O2—H2B···N3ii 0.82 1.83 2.640 (4) 168

Symmetry codes: (i) x, y−1, z; (ii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2662).

References

  1. Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan.
  2. Hou, Q.-F., Ye, L. & Jiang, S.-M. (2007). Acta Cryst. E63, o939–o940.
  3. Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan.
  4. Rigaku/MSC & Rigaku Corporation (2002). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA.
  5. Sheldrick, G. M. (2008). Acta Cryst A64, 112–122. [DOI] [PubMed]
  6. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049836/cv2662sup1.cif

e-65-o3213-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049836/cv2662Isup2.hkl

e-65-o3213-Isup2.hkl (222.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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