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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Nov 28;65(Pt 12):m1709. doi: 10.1107/S1600536809051101

Poly[1,4-bis­(4-pyridylmeth­yl)piperazine­diium [[tetra­aqua­cobaltate(II)]-μ-pyromellitato-κ2 O 1:O 4] dihydrate]

Laura K Sposato a, Robert L LaDuca b,*
PMCID: PMC2972020  PMID: 21578710

Abstract

In the title compound, {(C16H22N4)[Co(C10H2O8)(H2O)4]·2H2O}n, the octa­hedrally coordinated CoII atom is situated on an inversion center and possesses four aqua ligands. The Co atoms are linked into an anionic coordination polymer chain by bis-monodentate pyromellitate ligands. The chain motifs are connected into a supra­molecular layer by hydrogen bonding mediated by uncoordinated water mol­ecules. Charge balance is provided by doubly protonated bis­(4-pyridylmeth­yl)piperazine units, which are anchored to the coordination polymer chain motifs by N—H⋯O hydrogen bonding.

Related literature

For some divalent cobalt pyromellitate coordination polymers containing dipyridyl ligands, see: Majumder et al. (2006). For the preparation of bis­(4-pyridylmeth­yl)piperazine, see: Pocic et al. (2005).graphic file with name e-65-m1709-scheme1.jpg

Experimental

Crystal data

  • (C16H22N4)[Co(C10H2O8)(H2O)4]·2H2O

  • M r = 687.52

  • Triclinic, Inline graphic

  • a = 7.278 (2) Å

  • b = 9.752 (3) Å

  • c = 11.257 (3) Å

  • α = 66.733 (3)°

  • β = 75.168 (3)°

  • γ = 83.359 (3)°

  • V = 709.5 (3) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.69 mm−1

  • T = 173 K

  • 0.24 × 0.14 × 0.10 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.853, T max = 0.933

  • 11370 measured reflections

  • 2908 independent reflections

  • 2511 reflections with I > 2σ(I)

  • R int = 0.058

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.153

  • S = 1.05

  • 2908 reflections

  • 226 parameters

  • 10 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 1.23 e Å−3

  • Δρmin = −0.91 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalMaker (Palmer, 2007); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809051101/hy2258sup1.cif

e-65-m1709-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051101/hy2258Isup2.hkl

e-65-m1709-Isup2.hkl (142.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1WA⋯O6i 0.88 (2) 2.38 (3) 2.997 (3) 128 (3)
O1W—H1WB⋯O1i 0.89 (2) 1.88 (2) 2.764 (3) 174 (3)
O5—H5A⋯N1 0.88 (2) 1.87 (2) 2.739 (3) 177 (3)
O5—H5B⋯O4 0.85 (2) 1.87 (2) 2.697 (3) 163 (3)
O6—H6C⋯O1W 0.86 (2) 1.92 (2) 2.753 (3) 165 (3)
O6—H6D⋯O2ii 0.86 (2) 1.81 (2) 2.624 (3) 158 (3)
N2—H2N⋯O3iii 0.91 (2) 1.73 (2) 2.630 (3) 171 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We gratefully acknowledge the donors of the American Chemical Society Petroleum Research Fund for funding this work.

supplementary crystallographic information

Comment

The diverse possible binding modes of the pyromellitate ligand (1,2,4,5-benzenetetracarboxylate) has allowed formation of a wide variety of cobalt-containing coordination polymers, especially in the presence of dipyridyl neutral co-ligands (Majumder et al., 2006). This chemistry was further developed by the synthesis of the title compound, which incorporates the long-spanning hydrogen-bonding capable dipyridyl ligand bis(4-pyridylmethyl)piperazine (bpmp).

The asymmetric unit of the title compound consists of a divalent CoII atom on a crystallographic inversion center, one-half of a pyromellitate tetraanion situated across another crystallographic inversion center, one-half of a (H2bpmp)2+ dication (protonated at each of the two piperazinyl N atoms) sited across another crystallographic inversion center, and one water molecule of crystallization. The local coordination and surrounding supramolecular environment is illustrated in Fig. 1.

Adjacent CoII ions are linked into [Co(H2O)4(pyromellitate)]n2n- anionic one-dimensional coordination polymer motifs, via symmetrically related monodentate carboxylate termini of the pyromellitate ligands. These chain motifs are oriented parallel to the [1 1 0] direction; the Co···Co distance along the chain is 11.474 (3) Å. Two of the pyromellitate carboxylate groups do not ligate to CoII ions. Neighboring chain motifs aggregate into supramolecular layers coincident with the ab planes (Fig. 2), established by hydrogen-bonding patterns between the co-crystallized water molecules, aqua ligands, and ligated pyromellitate carboxylate O atoms (Table 1). In turn, the supramolecular layers stack in an AAA pattern along the c axis, with charge-balancing (H2bpmp)2+ dications situated in the interlamellar regions (Fig. 3), thus forming the three-dimensional crystal structure of the title compound. The closest Co···Co contact distance between neighboring layers is 11.257 (3) Å, which defines the c lattice parameter.

Experimental

All starting materials were obtained commercially, except for bpmp, which was prepared by a published procedure (Pocic et al., 2005). A mixture of cobalt nitrate hexahydrate (108 mg, 0.37 mmol), pyromellitic acid (94 mg, 0.37 mmol), bpmp (99 mg, 0.37 mmol) and 10.0 g water (550 mmol) was placed into a 23 ml Teflon-lined Parr Acid Digestion bomb, which was then heated under autogenous pressure at 393 K for 48 h. After cooling to 293 K, orange blocks of the title compound were obtained along with a white powder.

Refinement

All H atoms bound to C atoms were placed in calculated positions and refined in riding mode, with C—H = 0.95 and 0.99 Å, and with Uiso(H) = 1.2Ueq(C). The H atoms bound to the water molecule O atoms and to the piperazinyl N atoms were found in a difference Fourier map and refined with restraints of O—H = 0.89 (1) and N—H = 0.92 (1) Å and with Uiso(H) = 1.2Ueq(O,N). The maximum and minimum residual electron density peaks of 1.234 and -0.908 e Å-3 were located 0.98 and 0.68 Å from the Co1 and O1W atoms, respectively.

Figures

Fig. 1.

Fig. 1.

The coordination environment of the title compound, showing 50% probability ellipsoids. H atom positions are shown as grey sticks. [Color codes: dark blue Co; light blue N; red O; black C; orange O in uncoordinated water molecule. Symmetry code: (i) -x+2, -y, -z+1.]

Fig. 2.

Fig. 2.

A view of the supramolecular layer in the title compound. Hydrogen bonding contacts are indicated as dashed bars.

Fig. 3.

Fig. 3.

Stacking diagram for the title compound, viewed down the a axis. Hydrogen bonding contacts are indicated as dashed bars.

Crystal data

(C16H22N4)[Co(C10H2O8)(H2O)4]·2H2O Z = 1
Mr = 687.52 F(000) = 359
Triclinic, P1 Dx = 1.609 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.278 (2) Å Cell parameters from 11370 reflections
b = 9.752 (3) Å θ = 2.0–26.5°
c = 11.257 (3) Å µ = 0.69 mm1
α = 66.733 (3)° T = 173 K
β = 75.168 (3)° Block, pink
γ = 83.359 (3)° 0.24 × 0.14 × 0.10 mm
V = 709.5 (3) Å3

Data collection

Bruker APEXII CCD diffractometer 2908 independent reflections
Radiation source: fine-focus sealed tube 2511 reflections with I > 2σ(I)
graphite Rint = 0.058
φ and ω scans θmax = 26.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.853, Tmax = 0.933 k = −12→12
11370 measured reflections l = −14→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.1134P)2] where P = (Fo2 + 2Fc2)/3
2908 reflections (Δ/σ)max < 0.001
226 parameters Δρmax = 1.23 e Å3
10 restraints Δρmin = −0.91 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 1.0000 0.0000 0.5000 0.0155 (2)
O1 0.8311 (2) 0.19744 (19) 0.45730 (18) 0.0192 (4)
O1W 0.4690 (3) −0.1576 (2) 0.6340 (2) 0.0255 (4)
H1WA 0.437 (4) −0.070 (3) 0.639 (3) 0.031*
H1WB 0.375 (4) −0.178 (4) 0.607 (3) 0.031*
O2 0.9191 (3) 0.2866 (2) 0.58976 (19) 0.0235 (4)
O3 0.3143 (3) 0.2159 (2) 0.82962 (18) 0.0236 (4)
O4 0.5304 (3) 0.1042 (2) 0.7189 (2) 0.0332 (5)
O5 0.8431 (3) −0.0690 (2) 0.69373 (18) 0.0183 (4)
H5A 0.829 (4) −0.163 (2) 0.748 (3) 0.022*
H5B 0.742 (3) −0.024 (3) 0.718 (3) 0.022*
O6 0.8063 (3) −0.0969 (2) 0.44473 (18) 0.0193 (4)
H6C 0.705 (3) −0.132 (3) 0.504 (3) 0.023*
H6D 0.876 (4) −0.166 (3) 0.425 (3) 0.023*
N1 0.7991 (3) −0.3648 (3) 0.8552 (2) 0.0284 (6)
N2 0.8089 (3) −0.9425 (2) 1.0284 (2) 0.0170 (5)
H2N 0.755 (4) −1.033 (2) 1.080 (3) 0.020*
C1 0.7611 (4) −0.4408 (3) 0.9870 (3) 0.0258 (6)
H1 0.7635 −0.3891 1.0426 0.031*
C2 0.7185 (4) −0.5911 (3) 1.0460 (3) 0.0224 (6)
H2 0.6933 −0.6409 1.1399 0.027*
C3 0.7131 (4) −0.6683 (3) 0.9661 (3) 0.0187 (5)
C4 0.7549 (4) −0.5898 (3) 0.8292 (3) 0.0242 (6)
H4 0.7544 −0.6384 0.7709 0.029*
C5 0.7970 (4) −0.4404 (3) 0.7793 (3) 0.0275 (6)
H5 0.8261 −0.3883 0.6856 0.033*
C6 0.6512 (4) −0.8286 (3) 1.0280 (3) 0.0204 (6)
H6A 0.5805 −0.8497 1.1210 0.024*
H6B 0.5619 −0.8407 0.9798 0.024*
C7 0.9515 (4) −0.9366 (3) 1.1004 (3) 0.0192 (5)
H7A 0.8864 −0.9431 1.1912 0.023*
H7B 1.0192 −0.8407 1.0532 0.023*
C8 0.9075 (4) −0.9347 (3) 0.8919 (3) 0.0196 (5)
H8A 0.9749 −0.8389 0.8415 0.024*
H8B 0.8124 −0.9387 0.8443 0.024*
C11 0.8099 (3) 0.2813 (3) 0.5227 (2) 0.0170 (5)
C12 0.6437 (3) 0.3901 (3) 0.5118 (2) 0.0161 (5)
C13 0.4741 (4) 0.3639 (3) 0.6092 (2) 0.0172 (5)
C14 0.6677 (4) 0.5255 (3) 0.4034 (3) 0.0178 (5)
H14 0.7827 0.5429 0.3367 0.021*
C15 0.4396 (3) 0.2173 (3) 0.7278 (3) 0.0176 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.0153 (3) 0.0153 (3) 0.0161 (3) 0.00250 (18) −0.0074 (2) −0.0044 (2)
O1 0.0192 (9) 0.0174 (9) 0.0221 (9) 0.0051 (7) −0.0094 (8) −0.0073 (8)
O1W 0.0222 (10) 0.0262 (11) 0.0285 (10) 0.0026 (8) −0.0124 (9) −0.0074 (9)
O2 0.0238 (10) 0.0250 (10) 0.0270 (10) 0.0084 (8) −0.0149 (8) −0.0123 (8)
O3 0.0281 (10) 0.0165 (9) 0.0198 (10) −0.0002 (8) −0.0011 (8) −0.0031 (8)
O4 0.0277 (11) 0.0174 (10) 0.0351 (12) 0.0074 (8) 0.0045 (9) 0.0008 (9)
O5 0.0186 (9) 0.0162 (9) 0.0184 (9) 0.0007 (7) −0.0045 (8) −0.0049 (7)
O6 0.0165 (9) 0.0201 (10) 0.0232 (10) 0.0033 (7) −0.0082 (8) −0.0090 (8)
N1 0.0265 (13) 0.0193 (12) 0.0329 (14) 0.0013 (9) −0.0061 (11) −0.0042 (10)
N2 0.0187 (11) 0.0141 (10) 0.0169 (10) 0.0003 (8) −0.0062 (9) −0.0033 (8)
C1 0.0251 (14) 0.0242 (14) 0.0303 (15) 0.0026 (11) −0.0081 (12) −0.0125 (12)
C2 0.0236 (14) 0.0207 (14) 0.0211 (13) 0.0019 (11) −0.0074 (11) −0.0052 (11)
C3 0.0156 (12) 0.0184 (13) 0.0207 (13) 0.0023 (9) −0.0067 (10) −0.0051 (10)
C4 0.0260 (14) 0.0226 (14) 0.0211 (13) 0.0030 (11) −0.0072 (11) −0.0049 (11)
C5 0.0297 (15) 0.0211 (14) 0.0216 (14) 0.0035 (11) −0.0048 (12) 0.0004 (11)
C6 0.0181 (13) 0.0189 (13) 0.0212 (13) 0.0013 (10) −0.0060 (11) −0.0040 (10)
C7 0.0216 (13) 0.0195 (13) 0.0175 (12) 0.0017 (10) −0.0089 (10) −0.0060 (10)
C8 0.0204 (13) 0.0207 (13) 0.0176 (12) 0.0027 (10) −0.0080 (10) −0.0058 (10)
C11 0.0149 (12) 0.0135 (12) 0.0155 (12) 0.0013 (9) −0.0016 (10) 0.0002 (9)
C12 0.0167 (12) 0.0132 (12) 0.0172 (12) 0.0022 (9) −0.0070 (10) −0.0034 (10)
C13 0.0178 (12) 0.0137 (12) 0.0177 (12) 0.0020 (9) −0.0063 (10) −0.0026 (10)
C14 0.0163 (12) 0.0160 (12) 0.0179 (12) 0.0013 (9) −0.0052 (10) −0.0027 (10)
C15 0.0142 (12) 0.0165 (12) 0.0196 (13) 0.0008 (9) −0.0063 (10) −0.0032 (10)

Geometric parameters (Å, °)

Co1—O5 2.0631 (18) C2—H2 0.9500
Co1—O1 2.1150 (17) C3—C4 1.392 (4)
Co1—O6 2.1184 (18) C3—C6 1.507 (4)
O1—C11 1.274 (3) C4—C5 1.379 (4)
O1W—H1WA 0.881 (18) C4—H4 0.9500
O1W—H1WB 0.885 (17) C5—H5 0.9500
O2—C11 1.246 (3) C6—H6A 0.9900
O3—C15 1.266 (3) C6—H6B 0.9900
O4—C15 1.244 (3) C7—C8i 1.517 (4)
O5—H5A 0.875 (17) C7—H7A 0.9900
O5—H5B 0.852 (17) C7—H7B 0.9900
O6—H6C 0.857 (17) C8—C7i 1.517 (4)
O6—H6D 0.863 (17) C8—H8A 0.9900
N1—C5 1.334 (4) C8—H8B 0.9900
N1—C1 1.340 (4) C11—C12 1.510 (3)
N2—C7 1.490 (3) C12—C14 1.391 (3)
N2—C8 1.495 (3) C12—C13 1.397 (3)
N2—C6 1.502 (3) C13—C14ii 1.395 (3)
N2—H2N 0.906 (18) C13—C15 1.514 (3)
C1—C2 1.384 (4) C14—C13ii 1.394 (3)
C1—H1 0.9500 C14—H14 0.9500
C2—C3 1.393 (4)
O5—Co1—O5iii 180.0 C5—C4—C3 119.0 (3)
O5—Co1—O1 88.13 (7) C5—C4—H4 120.5
O5iii—Co1—O1 91.87 (7) C3—C4—H4 120.5
O5—Co1—O1iii 91.87 (7) N1—C5—C4 123.7 (3)
O5iii—Co1—O1iii 88.13 (7) N1—C5—H5 118.2
O1—Co1—O1iii 180.000 (1) C4—C5—H5 118.2
O5—Co1—O6 91.72 (7) N2—C6—C3 115.3 (2)
O5iii—Co1—O6 88.28 (7) N2—C6—H6A 108.4
O1—Co1—O6 88.61 (7) C3—C6—H6A 108.4
O1iii—Co1—O6 91.39 (7) N2—C6—H6B 108.4
O5—Co1—O6iii 88.28 (7) C3—C6—H6B 108.4
O5iii—Co1—O6iii 91.72 (7) H6A—C6—H6B 107.5
O1—Co1—O6iii 91.39 (7) N2—C7—C8i 109.5 (2)
O1iii—Co1—O6iii 88.61 (7) N2—C7—H7A 109.8
O6—Co1—O6iii 180.000 (1) C8i—C7—H7A 109.8
C11—O1—Co1 122.61 (16) N2—C7—H7B 109.8
H1WA—O1W—H1WB 104 (3) C8i—C7—H7B 109.8
Co1—O5—H5A 123.9 (19) H7A—C7—H7B 108.2
Co1—O5—H5B 123 (2) N2—C8—C7i 110.4 (2)
H5A—O5—H5B 105 (2) N2—C8—H8A 109.6
Co1—O6—H6C 116 (2) C7i—C8—H8A 109.6
Co1—O6—H6D 102 (2) N2—C8—H8B 109.6
H6C—O6—H6D 112 (3) C7i—C8—H8B 109.6
C5—N1—C1 117.3 (2) H8A—C8—H8B 108.1
C7—N2—C8 109.8 (2) O2—C11—O1 125.8 (2)
C7—N2—C6 113.4 (2) O2—C11—C12 117.0 (2)
C8—N2—C6 112.9 (2) O1—C11—C12 117.1 (2)
C7—N2—H2N 102 (2) C14—C12—C13 119.4 (2)
C8—N2—H2N 111.8 (19) C14—C12—C11 117.6 (2)
C6—N2—H2N 106.2 (19) C13—C12—C11 122.9 (2)
N1—C1—C2 123.1 (3) C14ii—C13—C12 119.4 (2)
N1—C1—H1 118.5 C14ii—C13—C15 119.1 (2)
C2—C1—H1 118.5 C12—C13—C15 121.4 (2)
C1—C2—C3 119.2 (3) C12—C14—C13ii 121.1 (2)
C1—C2—H2 120.4 C12—C14—H14 119.4
C3—C2—H2 120.4 C13ii—C14—H14 119.4
C4—C3—C2 117.7 (2) O4—C15—O3 123.5 (2)
C4—C3—C6 121.9 (2) O4—C15—C13 118.8 (2)
C2—C3—C6 120.3 (2) O3—C15—C13 117.7 (2)
O5—Co1—O1—C11 54.13 (19) C7—N2—C8—C7i 59.2 (3)
O5iii—Co1—O1—C11 −125.86 (19) C6—N2—C8—C7i −173.3 (2)
O6—Co1—O1—C11 145.90 (19) Co1—O1—C11—O2 21.7 (3)
O6iii—Co1—O1—C11 −34.10 (19) Co1—O1—C11—C12 −161.93 (16)
C5—N1—C1—C2 −0.8 (4) O2—C11—C12—C14 93.1 (3)
N1—C1—C2—C3 −0.4 (4) O1—C11—C12—C14 −83.6 (3)
C1—C2—C3—C4 1.2 (4) O2—C11—C12—C13 −82.8 (3)
C1—C2—C3—C6 −174.9 (2) O1—C11—C12—C13 100.5 (3)
C2—C3—C4—C5 −0.8 (4) C14—C12—C13—C14ii −0.5 (4)
C6—C3—C4—C5 175.2 (2) C11—C12—C13—C14ii 175.3 (2)
C1—N1—C5—C4 1.2 (4) C14—C12—C13—C15 178.9 (2)
C3—C4—C5—N1 −0.4 (4) C11—C12—C13—C15 −5.3 (4)
C7—N2—C6—C3 59.1 (3) C13—C12—C14—C13ii 0.5 (4)
C8—N2—C6—C3 −66.5 (3) C11—C12—C14—C13ii −175.6 (2)
C4—C3—C6—N2 81.0 (3) C14ii—C13—C15—O4 156.2 (3)
C2—C3—C6—N2 −103.2 (3) C12—C13—C15—O4 −23.2 (4)
C8—N2—C7—C8i −58.7 (3) C14ii—C13—C15—O3 −21.5 (4)
C6—N2—C7—C8i 174.0 (2) C12—C13—C15—O3 159.2 (2)

Symmetry codes: (i) −x+2, −y−2, −z+2; (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y, −z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1W—H1WA···O6iv 0.88 (2) 2.38 (3) 2.997 (3) 128 (3)
O1W—H1WB···O1iv 0.89 (2) 1.88 (2) 2.764 (3) 174 (3)
O5—H5A···N1 0.88 (2) 1.87 (2) 2.739 (3) 177 (3)
O5—H5B···O4 0.85 (2) 1.87 (2) 2.697 (3) 163 (3)
O6—H6C···O1W 0.86 (2) 1.92 (2) 2.753 (3) 165 (3)
O6—H6D···O2iii 0.86 (2) 1.81 (2) 2.624 (3) 158 (3)
N2—H2N···O3v 0.91 (2) 1.73 (2) 2.630 (3) 171 (3)

Symmetry codes: (iv) −x+1, −y, −z+1; (iii) −x+2, −y, −z+1; (v) −x+1, −y−1, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2258).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809051101/hy2258sup1.cif

e-65-m1709-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051101/hy2258Isup2.hkl

e-65-m1709-Isup2.hkl (142.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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