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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Nov 21;65(Pt 12):o3183. doi: 10.1107/S1600536809049241

2-Amino-3-methyl­pyridinium 2-amino-5-methyl­pyridinium sulfate monohydrate

Jiang Gong a,b, Gang Chen c, Shi-Feng Ni b, Yong-Yao Zhang c, Hai-Bin Wang d,*
PMCID: PMC2972034  PMID: 21578895

Abstract

The asymmetric unit of the title compound, 2C6H9N2 +·SO4 2−·H2O, contains two isomeric protonated amino­methyl­pyridine cations, a sulfate anion and a solvent water mol­ecule. The cations are in the iminium tautomeric form. In the crystal structure, inter­molecular O—H⋯O, N—H⋯O and weak C—H⋯O hydrogen bonds link the components into a three-dimensional network. Additional stabilization is provided by weak π–π stacking inter­actions, with centroid–centroid distances of 3.758 (2) and 3.774 (1) Å.

Related literature

For related structures, see: Nahringbauer & Kvick (1977); Espenbetov et al. (1985); Jin et al. (2000, 2001, 2005); Luque et al. (1997). For studies on the tautomeric forms of 2-amino­pyridine systems, see: Inuzuka & Fujimoto (1986, 1990); Ishikawa et al. (2002).graphic file with name e-65-o3183-scheme1.jpg

Experimental

Crystal data

  • 2C6H9N2 +·SO4 2−·H2O

  • M r = 332.39

  • Monoclinic, Inline graphic

  • a = 8.4071 (7) Å

  • b = 20.7654 (17) Å

  • c = 9.3369 (8) Å

  • β = 103.983 (1)°

  • V = 1581.7 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.23 mm−1

  • T = 293 K

  • 0.30 × 0.30 × 0.30 mm

Data collection

  • Bruker SMART APEX area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.908, T max = 0.923

  • 8087 measured reflections

  • 2780 independent reflections

  • 2492 reflections with I > 2σ(I)

  • R int = 0.015

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.129

  • S = 1.06

  • 2780 reflections

  • 207 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.38 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049241/lh2943sup1.cif

e-65-o3183-sup1.cif (19.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049241/lh2943Isup2.hkl

e-65-o3183-Isup2.hkl (133.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1 0.86 1.82 2.657 (2) 164
N2—H2A⋯O2 0.86 2.14 2.991 (3) 170
N3—H3⋯O3 0.86 1.93 2.781 (3) 173
N4—H4A⋯O1 0.86 2.02 2.826 (3) 156
N4—H4B⋯O5 0.86 2.07 2.857 (3) 152
C5—H5⋯O5 0.93 2.41 3.334 (3) 171
O5—H5B⋯O2i 0.82 (3) 2.03 (3) 2.833 (3) 167 (3)
O5—H5A⋯O3ii 0.80 (2) 2.10 (4) 2.845 (3) 157 (3)
C2—H2⋯O1iii 0.93 2.41 3.334 (3) 176
N2—H2B⋯O4iii 0.86 1.99 2.835 (3) 168
C11—H11⋯O3iv 0.93 2.56 3.317 (3) 138

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

We are grateful for the financial support of the Natural Science Foundation of Tibet (2009-10-12) and the Natural Science Foundation of the Key Laboratory of Resource Biology and Biotechnology in Western China (Northwest University), Ministry of Education (2009-11-12).

supplementary crystallographic information

Comment

We are not aware of any articles which report crystal structures containing different two pyridininium cations and a sulfate cation. We present the crystal structure of the title compound, (I), herein.

The asymmetric unit of the title compound (I) is shown in Fig. 1. Protonation of atom N1 of the 2-amino-5-methyl-pyridine and N3 of 2-amino-3-methyl-pyridine cation results in a widening of the C1—N1—C5 and C7—N3—C11 angles. These values can be compared to those of 117.5 (3)° in neutral 2-amino-5-methyl-pyridine (Nahringbauer & Kvick, 1977) and 118.0 (2)° in neutral 2-amino-3-methyl-pyridine (Espenbetov et al., 1985). The C1-C5/N1 ring and C7-C11/N3 pyridinium rings are both essentially planar, with a maximum deviation from the mean plane of the rings of 0.024 (3)Å for atom N2 and 0.007 (3)Å for atom C9. The geometries of the two pyridinium rings are similar to those observed in other 2-aminopyridine structures (Luque et al., 1997; Jin et al., 2000,2001,2005) that are in the iminium tautomeric form (Inuzuka & Fujimoto, 1986,1990; Ishikawa et al., 2002).

In the crystal structure, intermolecular O-H···O, N-H···O and weak C-H···O hydrogen bonds link the components of the structure into a three-dimensional network (Fig. 2). Additional stabilization is provided by weak π–π stacking interactions with centroid to centroid distances of 3.758 (2) and 3.774 (1)Å.

Experimental

2-Amino-3-methyl-pyridine, 2-amino-5-methyl-pyridine and sulfuric acid were mixed in molar ratio 1:1:1 and dissolved in sufficient water. The solution was stirred and heated until a clear solution resulted. Colourless crystals of (I) were formed by gradual evaporation of excess water over a period of one week at 293 K.

Refinement

H atoms of the water molecule were located in a differnce Fourier map, and were refined independently with isotropic displacement parameters. Other H atom were placed in calculated positions and allowed to ride on their parent atoms at distances of 0.93 Å for aromatic C atoms, 0.86 Å for amido and 0.96 Å for methyl with isotropic displacement parameters 1.2 times Ueq of the parent atoms or 1.5 times Ueq for methyl C atoms.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of (I) showing 40% probabilty ellipsoids for non-hydrogen atoms. The dashed lines indicate hydrogen bonds.

Fig. 2.

Fig. 2.

Part of the crystal structure showing hydrogen bonds as dashed lines.

Crystal data

2C6H9N2+·SO42·H2O Z = 4
Mr = 332.39 F(000) = 704.0
Monoclinic, P21/c Dx = 1.396 Mg m3
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 8.4071 (7) Å θ = 2.1–25.1°
b = 20.7654 (17) Å µ = 0.23 mm1
c = 9.3369 (8) Å T = 293 K
β = 103.983 (1)° Prism, colorless
V = 1581.7 (2) Å3 0.30 × 0.30 × 0.30 mm

Data collection

Bruker SMART APEX area-detector diffractometer 2780 independent reflections
Radiation source: fine-focus sealed tube 2492 reflections with I > 2σ(I)
graphite Rint = 0.015
φ and ω scan θmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −10→9
Tmin = 0.908, Tmax = 0.923 k = −24→23
8087 measured reflections l = −11→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0672P)2 + 1.0523P] where P = (Fo2 + 2Fc2)/3
2780 reflections (Δ/σ)max = 0.001
207 parameters Δρmax = 0.37 e Å3
0 restraints Δρmin = −0.37 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
H5B 0.897 (4) 0.5692 (16) 0.975 (4) 0.072 (10)*
H5A 0.873 (4) 0.5243 (17) 1.060 (4) 0.076 (12)*
S1 0.13278 (6) 0.60692 (2) 0.79985 (6) 0.03698 (19)
O1 0.3104 (2) 0.60658 (8) 0.8712 (2) 0.0532 (5)
O2 0.0451 (2) 0.63253 (9) 0.9043 (2) 0.0589 (5)
O3 0.08256 (19) 0.53962 (8) 0.76110 (18) 0.0468 (4)
O4 0.1027 (3) 0.64557 (10) 0.6672 (2) 0.0701 (6)
O5 0.8248 (2) 0.55071 (10) 1.0044 (2) 0.0524 (5)
N1 0.4680 (2) 0.67850 (8) 1.09636 (19) 0.0366 (4)
H1 0.4085 0.6519 1.0356 0.044*
N2 0.2340 (2) 0.73695 (10) 1.0919 (2) 0.0537 (5)
H2A 0.1785 0.7101 1.0292 0.064*
H2B 0.1856 0.7691 1.1213 0.064*
N3 0.3036 (2) 0.47027 (10) 0.6431 (2) 0.0439 (5)
H3 0.2413 0.4940 0.6818 0.053*
N4 0.5202 (3) 0.50690 (11) 0.8229 (2) 0.0550 (6)
H4A 0.4523 0.5294 0.8577 0.066*
H4B 0.6232 0.5080 0.8647 0.066*
C1 0.3949 (3) 0.72881 (11) 1.1434 (2) 0.0383 (5)
C2 0.4942 (3) 0.77118 (11) 1.2445 (3) 0.0452 (5)
H2 0.4480 0.8064 1.2807 0.054*
C3 0.6580 (3) 0.76018 (12) 1.2886 (3) 0.0489 (6)
H3A 0.7229 0.7884 1.3552 0.059*
C4 0.7325 (3) 0.70730 (12) 1.2365 (3) 0.0443 (5)
C5 0.6321 (3) 0.66757 (11) 1.1403 (2) 0.0406 (5)
H5 0.6764 0.6320 1.1035 0.049*
C6 0.9147 (3) 0.69585 (16) 1.2847 (4) 0.0686 (8)
H6A 0.9644 0.7290 1.3526 0.103*
H6B 0.9607 0.6966 1.2001 0.103*
H6C 0.9350 0.6546 1.3322 0.103*
C7 0.4663 (3) 0.47068 (11) 0.7055 (2) 0.0409 (5)
C8 0.5701 (3) 0.43135 (11) 0.6419 (3) 0.0443 (5)
C9 0.4968 (4) 0.39642 (13) 0.5209 (3) 0.0584 (7)
H9 0.5618 0.3708 0.4764 0.070*
C10 0.3270 (4) 0.39747 (14) 0.4606 (3) 0.0668 (8)
H10 0.2803 0.3727 0.3783 0.080*
C11 0.2333 (3) 0.43492 (13) 0.5239 (3) 0.0553 (7)
H11 0.1205 0.4364 0.4856 0.066*
C12 0.7509 (3) 0.42992 (14) 0.7089 (3) 0.0584 (7)
H12A 0.7763 0.4577 0.7935 0.088*
H12B 0.8083 0.4444 0.6376 0.088*
H12C 0.7840 0.3867 0.7385 0.088*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0324 (3) 0.0332 (3) 0.0414 (3) −0.0057 (2) 0.0014 (2) 0.0011 (2)
O1 0.0341 (9) 0.0525 (10) 0.0654 (11) −0.0031 (7) −0.0027 (8) −0.0152 (8)
O2 0.0513 (11) 0.0522 (11) 0.0765 (12) −0.0050 (8) 0.0215 (9) −0.0146 (9)
O3 0.0433 (9) 0.0382 (9) 0.0543 (10) −0.0094 (7) 0.0030 (7) −0.0033 (7)
O4 0.0798 (14) 0.0605 (12) 0.0590 (12) −0.0227 (10) −0.0047 (10) 0.0196 (9)
O5 0.0385 (10) 0.0571 (11) 0.0607 (12) −0.0011 (9) 0.0103 (9) 0.0047 (9)
N1 0.0374 (10) 0.0344 (9) 0.0361 (9) −0.0005 (7) 0.0052 (7) −0.0023 (7)
N2 0.0389 (11) 0.0536 (12) 0.0639 (14) 0.0080 (9) 0.0034 (10) −0.0141 (10)
N3 0.0387 (10) 0.0449 (11) 0.0465 (11) 0.0045 (8) 0.0071 (8) 0.0032 (9)
N4 0.0383 (11) 0.0714 (15) 0.0506 (12) 0.0024 (10) 0.0018 (9) −0.0153 (11)
C1 0.0404 (12) 0.0390 (12) 0.0347 (11) 0.0041 (9) 0.0077 (9) 0.0022 (9)
C2 0.0516 (14) 0.0408 (12) 0.0415 (12) 0.0046 (10) 0.0080 (10) −0.0081 (10)
C3 0.0511 (14) 0.0475 (14) 0.0425 (13) −0.0055 (11) 0.0003 (11) −0.0078 (10)
C4 0.0385 (12) 0.0476 (13) 0.0444 (12) −0.0003 (10) 0.0052 (10) 0.0027 (10)
C5 0.0401 (12) 0.0391 (12) 0.0429 (12) 0.0053 (9) 0.0108 (10) 0.0018 (9)
C6 0.0398 (14) 0.077 (2) 0.083 (2) −0.0004 (13) 0.0031 (13) −0.0047 (17)
C7 0.0430 (12) 0.0402 (12) 0.0375 (11) −0.0011 (9) 0.0060 (9) 0.0052 (9)
C8 0.0453 (13) 0.0412 (12) 0.0459 (12) 0.0055 (10) 0.0101 (10) 0.0056 (10)
C9 0.0624 (17) 0.0525 (15) 0.0592 (16) 0.0093 (12) 0.0127 (13) −0.0087 (12)
C10 0.0681 (19) 0.0652 (18) 0.0580 (17) 0.0031 (14) −0.0028 (14) −0.0178 (14)
C11 0.0488 (14) 0.0547 (15) 0.0529 (15) −0.0019 (12) −0.0061 (12) −0.0008 (12)
C12 0.0462 (14) 0.0590 (16) 0.0687 (17) 0.0090 (12) 0.0116 (13) 0.0029 (13)

Geometric parameters (Å, °)

S1—O4 1.4460 (19) C2—H2 0.9300
S1—O2 1.4577 (19) C3—C4 1.408 (3)
S1—O3 1.4792 (16) C3—H3A 0.9300
S1—O1 1.4808 (17) C4—C5 1.354 (3)
O5—H5B 0.82 (4) C4—C6 1.508 (3)
O5—H5A 0.79 (4) C5—H5 0.9300
N1—C1 1.339 (3) C6—H6A 0.9600
N1—C5 1.360 (3) C6—H6B 0.9600
N1—H1 0.8600 C6—H6C 0.9600
N2—C1 1.333 (3) C7—C8 1.426 (3)
N2—H2A 0.8600 C8—C9 1.358 (4)
N2—H2B 0.8600 C8—C12 1.498 (3)
N3—C11 1.345 (3) C9—C10 1.402 (4)
N3—C7 1.351 (3) C9—H9 0.9300
N3—H3 0.8600 C10—C11 1.341 (4)
N4—C7 1.316 (3) C10—H10 0.9300
N4—H4A 0.8600 C11—H11 0.9300
N4—H4B 0.8600 C12—H12A 0.9600
C1—C2 1.407 (3) C12—H12B 0.9600
C2—C3 1.358 (3) C12—H12C 0.9600
O4—S1—O2 111.00 (13) C4—C5—N1 121.5 (2)
O4—S1—O3 109.53 (11) C4—C5—H5 119.2
O2—S1—O3 110.35 (10) N1—C5—H5 119.2
O4—S1—O1 109.70 (12) C4—C6—H6A 109.5
O2—S1—O1 108.56 (11) C4—C6—H6B 109.5
O3—S1—O1 107.63 (9) H6A—C6—H6B 109.5
H5B—O5—H5A 104 (3) C4—C6—H6C 109.5
C1—N1—C5 122.93 (19) H6A—C6—H6C 109.5
C1—N1—H1 118.5 H6B—C6—H6C 109.5
C5—N1—H1 118.5 N4—C7—N3 118.1 (2)
C1—N2—H2A 120.0 N4—C7—C8 123.5 (2)
C1—N2—H2B 120.0 N3—C7—C8 118.3 (2)
H2A—N2—H2B 120.0 C9—C8—C7 116.9 (2)
C11—N3—C7 123.8 (2) C9—C8—C12 123.2 (2)
C11—N3—H3 118.1 C7—C8—C12 119.9 (2)
C7—N3—H3 118.1 C8—C9—C10 122.6 (3)
C7—N4—H4A 120.0 C8—C9—H9 118.7
C7—N4—H4B 120.0 C10—C9—H9 118.7
H4A—N4—H4B 120.0 C11—C10—C9 118.8 (3)
N2—C1—N1 119.1 (2) C11—C10—H10 120.6
N2—C1—C2 123.3 (2) C9—C10—H10 120.6
N1—C1—C2 117.6 (2) C10—C11—N3 119.6 (2)
C3—C2—C1 119.5 (2) C10—C11—H11 120.2
C3—C2—H2 120.3 N3—C11—H11 120.2
C1—C2—H2 120.3 C8—C12—H12A 109.5
C2—C3—C4 122.0 (2) C8—C12—H12B 109.5
C2—C3—H3A 119.0 H12A—C12—H12B 109.5
C4—C3—H3A 119.0 C8—C12—H12C 109.5
C5—C4—C3 116.5 (2) H12A—C12—H12C 109.5
C5—C4—C6 121.9 (2) H12B—C12—H12C 109.5
C3—C4—C6 121.6 (2)
C5—N1—C1—N2 178.2 (2) C11—N3—C7—C8 −0.1 (3)
C5—N1—C1—C2 −0.9 (3) N4—C7—C8—C9 179.8 (2)
N2—C1—C2—C3 −178.4 (2) N3—C7—C8—C9 0.6 (3)
N1—C1—C2—C3 0.7 (3) N4—C7—C8—C12 −0.1 (4)
C1—C2—C3—C4 −0.1 (4) N3—C7—C8—C12 −179.3 (2)
C2—C3—C4—C5 −0.3 (4) C7—C8—C9—C10 −0.9 (4)
C2—C3—C4—C6 179.3 (2) C12—C8—C9—C10 179.0 (3)
C3—C4—C5—N1 0.2 (3) C8—C9—C10—C11 0.7 (5)
C6—C4—C5—N1 −179.5 (2) C9—C10—C11—N3 −0.1 (4)
C1—N1—C5—C4 0.4 (3) C7—N3—C11—C10 −0.1 (4)
C11—N3—C7—N4 −179.4 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O1 0.86 1.82 2.657 (2) 164
N2—H2A···O2 0.86 2.14 2.991 (3) 170
N3—H3···O3 0.86 1.93 2.781 (3) 173
N4—H4A···O1 0.86 2.02 2.826 (3) 156
N4—H4B···O5 0.86 2.07 2.857 (3) 152
C5—H5···O5 0.93 2.41 3.334 (3) 171
O5—H5B···O2i 0.82 (3) 2.03 (3) 2.833 (3) 167 (3)
O5—H5A···O3ii 0.80 (2) 2.10 (4) 2.845 (3) 157 (3)
C2—H2···O1iii 0.93 2.41 3.334 (3) 176
N2—H2B···O4iii 0.86 1.99 2.835 (3) 168
C11—H11···O3iv 0.93 2.56 3.317 (3) 138

Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+2; (iii) x, −y+3/2, z+1/2; (iv) −x, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2943).

References

  1. Bruker (2000). SMART, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Espenbetov, A. A., Struchkov, Yu. T., Poplavskaya, I. A. & Kurman’galieva, R. G. (1985). Izv. Akad. Nauk Kaz. SSR Ser. Khim. pp. 56–57.
  3. Inuzuka, K. & Fujimoto, A. (1986). Spectrochim. Acta A, 42, 929–937.
  4. Inuzuka, K. & Fujimoto, A. (1990). Bull. Chem. Soc. Jpn, 63, 971–975.
  5. Ishikawa, H., Iwata, K. & Hamaguchi, H. (2002). J. Phys. Chem. A, 106, 2305–2312.
  6. Jin, Z.-M., Pan, Y.-J., Hu, M.-L. & Shen, L. (2001). J. Chem. Crystallogr. 31, 191–195.
  7. Jin, Z.-M., Pan, Y.-J., Liu, J.-G. & Xu, D.-J. (2000). J. Chem. Crystallogr. 30, 195–198.
  8. Jin, Z.-M., Shun, N., Lü, Y.-P., Hu, M.-L. & Shen, L. (2005). Acta Cryst. C61, m43–m45. [DOI] [PubMed]
  9. Luque, A., Sertucha, J., Lezama, L., Rojo, T. & Roman, P. (1997). J. Chem. Soc. Dalton Trans. pp. 847–854.
  10. Nahringbauer, I. & Kvick, Å. (1977). Acta Cryst. B33, 2902–2905.
  11. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049241/lh2943sup1.cif

e-65-o3183-sup1.cif (19.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049241/lh2943Isup2.hkl

e-65-o3183-Isup2.hkl (133.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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