Abstract
The two independent molecules in the asymmetric unit of the title compound, C16H14N2, are planar [dihedral angle between the terminal pyridine rings = 1.76 (2)°] and each display an all-trans configuration of C=C double bonds. One of the two molecules lies about a center of inversion. The dihedral angle between the two pyridine rings in the molecule lying on a general position is 1.65 (2)°.
Related literature
For acceptor-terminated polyenes, see: Gao et al. (2004 ▶). For the synthesis, see: Woitellier et al. (1989 ▶). For a related structure, see: Pham (2009 ▶).
Experimental
Crystal data
C16H14N2
M r = 234.29
Monoclinic,
a = 5.837 (1) Å
b = 17.171 (4) Å
c = 19.227 (4) Å
β = 97.685 (4)°
V = 1909.8 (7) Å3
Z = 6
Mo Kα radiation
μ = 0.07 mm−1
T = 173 K
0.44 × 0.24 × 0.22 mm
Data collection
Bruker SMART Platform CCD diffractometer
Absorption correction: none
18771 measured reflections
3366 independent reflections
2460 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.032
wR(F 2) = 0.089
S = 1.01
3366 reflections
328 parameters
All H-atom parameters refined
Δρmax = 0.09 e Å−3
Δρmin = −0.15 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029092/ng2615sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029092/ng2615Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
This work was supported in part by Research Development grants from the Pennsylvania State University and partially by the MRSEC Program of the National Science Foundation under award No. DMR-0819885. The author also acknowledges William W. Brennessel, Victor G. Young Jr and the X-ray Crystallographic Laboratory at the University of Minnesota.
supplementary crystallographic information
Comment
Pyridyl-terminated polyenes have been investigated for studying electron reactions with applications in biology, inorganic reaction mechanisms and molecular electronics. They have also been used in the synthesis of coordination polymers as well as template for solid state reactions.
For related systems of acceptor terminated polyenes, see: Gao et al. (2004); Pham (2009). For literature related to the synthesis, see: Woitellier et al. (1989).
Experimental
Synthesis was carried out following literature procedures (Woitellier et al., 1989) as follows: a solution of potassium tert-butoxide (1 2. l g in 200 ml of glyme) was added dropwise to a solution of tetraethyl ((E)-2-butene-1,4-diyl)diphosphonate (16.4 g, 0.05 mol) and pyridine-4-carboxaldehyde (10.70 g, 0.10 mol) in 100 ml of glyme at room temperature. After the addition of the base was complete, the resulting mixture was stirred at room temperature for 16 h. Cold water (ca 300–400 ml) was added and the product isolated by vacuum filtration (3.5 g, 30% crude yield) and recrystallized from acetone (2.3 g, 19%): mp 196–197. Crystals were grown from DMF.
Refinement
All hydrogen atoms were found from the difference map and refined with individual isotropic displacement parameters.
Figures
Fig. 1.
Ellipsoid plot
Fig. 2.
4-((1E,3E,5E)-6-(pyridin-4-yl)hexa-1,3,5-trienyl)pyridine.
Fig. 3.
Crystal packing viewed along the a axis.
Crystal data
| C16H14N2 | F(000) = 744 |
| Mr = 234.29 | Dx = 1.222 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 867 reflections |
| a = 5.837 (1) Å | θ = 2.5–27.5° |
| b = 17.171 (4) Å | µ = 0.07 mm−1 |
| c = 19.227 (4) Å | T = 173 K |
| β = 97.685 (4)° | Block, yellow |
| V = 1909.8 (7) Å3 | 0.44 × 0.24 × 0.22 mm |
| Z = 6 |
Data collection
| Bruker SMART Platform CCD diffractometer | 2460 reflections with I > 2σ(I) |
| Radiation source: normal-focus sealed tube | Rint = 0.028 |
| graphite | θmax = 25.0°, θmin = 1.6° |
| ω scans | h = −6→6 |
| 18771 measured reflections | k = −20→20 |
| 3366 independent reflections | l = −22→22 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.089 | All H-atom parameters refined |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.048P)2 + 0.1535P] where P = (Fo2 + 2Fc2)/3 |
| 3366 reflections | (Δ/σ)max = 0.001 |
| 328 parameters | Δρmax = 0.09 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.5720 (2) | 0.58755 (7) | −0.07734 (6) | 0.0569 (3) | |
| N2 | −0.45576 (19) | 1.10512 (6) | 0.36976 (5) | 0.0481 (3) | |
| N3 | −0.00550 (19) | 1.24674 (6) | 0.23495 (6) | 0.0497 (3) | |
| C1 | 0.6991 (3) | 0.65228 (9) | −0.06772 (8) | 0.0543 (4) | |
| H1 | 0.838 (3) | 0.6547 (8) | −0.0931 (7) | 0.062 (4)* | |
| C2 | 0.6494 (2) | 0.71361 (8) | −0.02588 (7) | 0.0462 (3) | |
| H2 | 0.751 (2) | 0.7581 (8) | −0.0194 (7) | 0.052 (4)* | |
| C3 | 0.4553 (2) | 0.71081 (7) | 0.00886 (6) | 0.0388 (3) | |
| C4 | 0.3222 (2) | 0.64283 (7) | −0.00011 (7) | 0.0431 (3) | |
| H4 | 0.185 (2) | 0.6363 (7) | 0.0227 (6) | 0.044 (3)* | |
| C5 | 0.3870 (3) | 0.58440 (8) | −0.04271 (7) | 0.0511 (4) | |
| H5 | 0.293 (2) | 0.5370 (8) | −0.0495 (6) | 0.056 (4)* | |
| C6 | −0.5830 (2) | 1.04076 (8) | 0.35549 (7) | 0.0479 (3) | |
| H6 | −0.722 (3) | 1.0359 (8) | 0.3800 (7) | 0.060 (4)* | |
| C7 | −0.5305 (2) | 0.98292 (8) | 0.31014 (7) | 0.0445 (3) | |
| H7 | −0.628 (2) | 0.9374 (8) | 0.3018 (6) | 0.049 (4)* | |
| C8 | −0.3348 (2) | 0.98987 (7) | 0.27589 (6) | 0.0385 (3) | |
| C9 | −0.2039 (2) | 1.05746 (7) | 0.29001 (6) | 0.0411 (3) | |
| H9 | −0.064 (2) | 1.0657 (7) | 0.2688 (6) | 0.041 (3)* | |
| C10 | −0.2692 (2) | 1.11169 (8) | 0.33646 (7) | 0.0449 (3) | |
| H10 | −0.176 (2) | 1.1575 (7) | 0.3472 (6) | 0.044 (3)* | |
| C11 | −0.1535 (2) | 1.23391 (8) | 0.17687 (7) | 0.0487 (3) | |
| H11 | −0.298 (2) | 1.2632 (7) | 0.1723 (7) | 0.055 (4)* | |
| C12 | −0.1104 (2) | 1.18348 (8) | 0.12416 (7) | 0.0453 (3) | |
| H12 | −0.223 (2) | 1.1766 (8) | 0.0831 (7) | 0.057 (4)* | |
| C13 | 0.0985 (2) | 1.14333 (7) | 0.12916 (6) | 0.0384 (3) | |
| C14 | 0.2518 (2) | 1.15541 (7) | 0.19037 (7) | 0.0415 (3) | |
| H14 | 0.401 (2) | 1.1294 (7) | 0.1986 (6) | 0.049 (4)* | |
| C15 | 0.1931 (2) | 1.20645 (8) | 0.24030 (7) | 0.0473 (3) | |
| H15 | 0.300 (2) | 1.2158 (8) | 0.2839 (7) | 0.059 (4)* | |
| C16 | 0.3959 (2) | 0.77741 (7) | 0.05039 (6) | 0.0414 (3) | |
| H16 | 0.504 (2) | 0.8205 (7) | 0.0528 (6) | 0.040 (3)* | |
| C17 | 0.2082 (2) | 0.78441 (7) | 0.08307 (6) | 0.0404 (3) | |
| H17 | 0.100 (2) | 0.7412 (7) | 0.0822 (6) | 0.043 (3)* | |
| C18 | 0.1516 (2) | 0.85257 (7) | 0.12091 (6) | 0.0432 (3) | |
| H18 | 0.260 (2) | 0.8965 (7) | 0.1235 (6) | 0.049 (4)* | |
| C19 | −0.0351 (2) | 0.85901 (7) | 0.15427 (7) | 0.0431 (3) | |
| H19 | −0.140 (2) | 0.8147 (7) | 0.1538 (6) | 0.047 (4)* | |
| C20 | −0.0919 (2) | 0.92526 (7) | 0.19440 (6) | 0.0414 (3) | |
| H20 | 0.012 (2) | 0.9683 (8) | 0.1966 (6) | 0.044 (3)* | |
| C21 | −0.2736 (2) | 0.92738 (7) | 0.23017 (6) | 0.0420 (3) | |
| H21 | −0.376 (2) | 0.8825 (8) | 0.2281 (6) | 0.049 (4)* | |
| C22 | 0.1515 (2) | 1.09529 (7) | 0.07030 (7) | 0.0420 (3) | |
| H22 | 0.030 (2) | 1.0935 (7) | 0.0295 (7) | 0.050 (4)* | |
| C23 | 0.3498 (2) | 1.05781 (7) | 0.06546 (7) | 0.0417 (3) | |
| H23 | 0.473 (2) | 1.0581 (7) | 0.1052 (6) | 0.044 (3)* | |
| C24 | 0.3997 (2) | 1.01778 (7) | 0.00320 (7) | 0.0439 (3) | |
| H24 | 0.275 (2) | 1.0192 (7) | −0.0377 (7) | 0.052 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0517 (7) | 0.0549 (8) | 0.0644 (8) | 0.0045 (6) | 0.0091 (6) | −0.0115 (6) |
| N2 | 0.0471 (7) | 0.0512 (7) | 0.0468 (6) | 0.0063 (5) | 0.0095 (5) | 0.0009 (5) |
| N3 | 0.0557 (7) | 0.0448 (6) | 0.0486 (7) | 0.0072 (5) | 0.0073 (6) | −0.0015 (5) |
| C1 | 0.0454 (9) | 0.0607 (9) | 0.0581 (9) | 0.0038 (7) | 0.0118 (7) | −0.0031 (7) |
| C2 | 0.0441 (8) | 0.0453 (8) | 0.0494 (8) | −0.0044 (6) | 0.0065 (6) | 0.0033 (6) |
| C3 | 0.0428 (7) | 0.0382 (7) | 0.0340 (6) | 0.0018 (5) | 0.0002 (5) | 0.0060 (5) |
| C4 | 0.0428 (8) | 0.0420 (7) | 0.0441 (7) | −0.0017 (6) | 0.0049 (6) | 0.0013 (6) |
| C5 | 0.0499 (9) | 0.0437 (8) | 0.0587 (9) | −0.0027 (6) | 0.0034 (7) | −0.0047 (7) |
| C6 | 0.0413 (8) | 0.0560 (9) | 0.0477 (8) | 0.0050 (6) | 0.0107 (6) | 0.0079 (7) |
| C7 | 0.0410 (8) | 0.0444 (8) | 0.0479 (8) | −0.0026 (6) | 0.0052 (6) | 0.0071 (6) |
| C8 | 0.0396 (7) | 0.0377 (7) | 0.0371 (7) | 0.0021 (5) | 0.0012 (5) | 0.0065 (5) |
| C9 | 0.0384 (7) | 0.0425 (7) | 0.0431 (7) | −0.0015 (6) | 0.0076 (6) | 0.0014 (6) |
| C10 | 0.0451 (8) | 0.0422 (8) | 0.0473 (8) | −0.0008 (6) | 0.0060 (6) | −0.0024 (6) |
| C11 | 0.0467 (8) | 0.0480 (8) | 0.0518 (8) | 0.0099 (6) | 0.0080 (7) | 0.0049 (6) |
| C12 | 0.0437 (8) | 0.0490 (8) | 0.0417 (8) | 0.0016 (6) | −0.0003 (6) | 0.0050 (6) |
| C13 | 0.0437 (7) | 0.0339 (6) | 0.0377 (7) | −0.0030 (5) | 0.0060 (6) | 0.0042 (5) |
| C14 | 0.0411 (8) | 0.0376 (7) | 0.0450 (7) | 0.0022 (6) | 0.0027 (6) | −0.0003 (6) |
| C15 | 0.0531 (9) | 0.0423 (7) | 0.0445 (8) | 0.0033 (6) | −0.0009 (6) | −0.0040 (6) |
| C16 | 0.0497 (8) | 0.0359 (7) | 0.0379 (7) | −0.0048 (6) | 0.0029 (6) | 0.0035 (5) |
| C17 | 0.0504 (8) | 0.0361 (7) | 0.0340 (7) | −0.0020 (6) | 0.0027 (6) | 0.0031 (5) |
| C18 | 0.0553 (9) | 0.0364 (7) | 0.0370 (7) | −0.0019 (6) | 0.0026 (6) | 0.0023 (6) |
| C19 | 0.0517 (8) | 0.0369 (7) | 0.0394 (7) | −0.0006 (6) | 0.0011 (6) | 0.0013 (6) |
| C20 | 0.0476 (8) | 0.0364 (7) | 0.0391 (7) | −0.0025 (6) | 0.0022 (6) | 0.0018 (5) |
| C21 | 0.0463 (8) | 0.0356 (7) | 0.0431 (7) | −0.0027 (6) | 0.0022 (6) | 0.0030 (6) |
| C22 | 0.0480 (8) | 0.0395 (7) | 0.0377 (7) | −0.0033 (6) | 0.0028 (6) | 0.0017 (5) |
| C23 | 0.0503 (8) | 0.0351 (7) | 0.0394 (7) | −0.0046 (6) | 0.0049 (6) | 0.0004 (5) |
| C24 | 0.0541 (8) | 0.0363 (7) | 0.0415 (7) | −0.0046 (6) | 0.0073 (7) | 0.0006 (6) |
Geometric parameters (Å, °)
| N1—C1 | 1.3355 (18) | C11—H11 | 0.975 (14) |
| N1—C5 | 1.3436 (18) | C12—C13 | 1.3931 (18) |
| N2—C6 | 1.3394 (17) | C12—H12 | 0.964 (14) |
| N2—C10 | 1.3396 (16) | C13—C14 | 1.3952 (17) |
| N3—C11 | 1.3354 (17) | C13—C22 | 1.4663 (17) |
| N3—C15 | 1.3422 (17) | C14—C15 | 1.3765 (18) |
| C1—C2 | 1.380 (2) | C14—H14 | 0.971 (13) |
| C1—H1 | 0.999 (15) | C15—H15 | 0.989 (13) |
| C2—C3 | 1.3910 (18) | C16—C17 | 1.3394 (18) |
| C2—H2 | 0.964 (13) | C16—H16 | 0.969 (12) |
| C3—C4 | 1.3999 (18) | C17—C18 | 1.4395 (18) |
| C3—C16 | 1.4627 (18) | C17—H17 | 0.973 (13) |
| C4—C5 | 1.3796 (19) | C18—C19 | 1.3408 (19) |
| C4—H4 | 0.970 (13) | C18—H18 | 0.982 (13) |
| C5—H5 | 0.980 (14) | C19—C20 | 1.4382 (18) |
| C6—C7 | 1.3830 (19) | C19—H19 | 0.976 (13) |
| C6—H6 | 0.997 (14) | C20—C21 | 1.3390 (18) |
| C7—C8 | 1.3974 (18) | C20—H20 | 0.954 (13) |
| C7—H7 | 0.969 (13) | C21—H21 | 0.973 (13) |
| C8—C9 | 1.3961 (17) | C22—C23 | 1.3380 (18) |
| C8—C21 | 1.4616 (17) | C22—H22 | 0.985 (13) |
| C9—C10 | 1.3788 (18) | C23—C24 | 1.4436 (18) |
| C9—H9 | 0.969 (12) | C23—H23 | 0.978 (12) |
| C10—H10 | 0.964 (13) | C24—C24i | 1.341 (3) |
| C11—C12 | 1.3815 (18) | C24—H24 | 0.997 (13) |
| C1—N1—C5 | 115.69 (12) | C13—C12—H12 | 119.3 (8) |
| C6—N2—C10 | 115.81 (12) | C12—C13—C14 | 116.18 (12) |
| C11—N3—C15 | 115.75 (12) | C12—C13—C22 | 119.88 (11) |
| N1—C1—C2 | 124.04 (14) | C14—C13—C22 | 123.85 (12) |
| N1—C1—H1 | 116.0 (8) | C15—C14—C13 | 119.46 (12) |
| C2—C1—H1 | 120.0 (8) | C15—C14—H14 | 118.7 (7) |
| C1—C2—C3 | 120.14 (13) | C13—C14—H14 | 121.9 (7) |
| C1—C2—H2 | 120.4 (8) | N3—C15—C14 | 124.58 (13) |
| C3—C2—H2 | 119.5 (8) | N3—C15—H15 | 115.0 (8) |
| C2—C3—C4 | 116.35 (12) | C14—C15—H15 | 120.4 (8) |
| C2—C3—C16 | 120.18 (12) | C17—C16—C3 | 126.49 (12) |
| C4—C3—C16 | 123.45 (12) | C17—C16—H16 | 118.4 (7) |
| C5—C4—C3 | 119.21 (13) | C3—C16—H16 | 115.1 (7) |
| C5—C4—H4 | 119.6 (7) | C16—C17—C18 | 124.57 (13) |
| C3—C4—H4 | 121.2 (7) | C16—C17—H17 | 119.5 (7) |
| N1—C5—C4 | 124.55 (13) | C18—C17—H17 | 115.9 (7) |
| N1—C5—H5 | 116.1 (8) | C19—C18—C17 | 124.39 (13) |
| C4—C5—H5 | 119.3 (8) | C19—C18—H18 | 118.2 (7) |
| N2—C6—C7 | 123.92 (13) | C17—C18—H18 | 117.4 (7) |
| N2—C6—H6 | 116.0 (8) | C18—C19—C20 | 125.63 (13) |
| C7—C6—H6 | 120.1 (8) | C18—C19—H19 | 118.8 (7) |
| C6—C7—C8 | 119.99 (13) | C20—C19—H19 | 115.5 (8) |
| C6—C7—H7 | 120.5 (8) | C21—C20—C19 | 123.54 (13) |
| C8—C7—H7 | 119.5 (8) | C21—C20—H20 | 119.9 (7) |
| C9—C8—C7 | 116.10 (12) | C19—C20—H20 | 116.5 (7) |
| C9—C8—C21 | 123.76 (12) | C20—C21—C8 | 127.09 (12) |
| C7—C8—C21 | 120.12 (12) | C20—C21—H21 | 118.8 (7) |
| C10—C9—C8 | 119.73 (12) | C8—C21—H21 | 114.1 (8) |
| C10—C9—H9 | 119.7 (7) | C23—C22—C13 | 126.71 (12) |
| C8—C9—H9 | 120.5 (7) | C23—C22—H22 | 117.8 (7) |
| N2—C10—C9 | 124.44 (13) | C13—C22—H22 | 115.3 (7) |
| N2—C10—H10 | 115.9 (7) | C22—C23—C24 | 124.00 (13) |
| C9—C10—H10 | 119.6 (7) | C22—C23—H23 | 119.9 (7) |
| N3—C11—C12 | 123.79 (13) | C24—C23—H23 | 116.1 (7) |
| N3—C11—H11 | 116.4 (8) | C24i—C24—C23 | 124.67 (17) |
| C12—C11—H11 | 119.8 (8) | C24i—C24—H24 | 119.5 (8) |
| C11—C12—C13 | 120.21 (13) | C23—C24—H24 | 115.8 (8) |
| C11—C12—H12 | 120.5 (8) | ||
| C5—N1—C1—C2 | −0.5 (2) | C11—C12—C13—C22 | −174.59 (11) |
| N1—C1—C2—C3 | −0.7 (2) | C12—C13—C14—C15 | −1.72 (18) |
| C1—C2—C3—C4 | 1.43 (18) | C22—C13—C14—C15 | 174.85 (12) |
| C1—C2—C3—C16 | −176.92 (12) | C11—N3—C15—C14 | 1.1 (2) |
| C2—C3—C4—C5 | −1.03 (18) | C13—C14—C15—N3 | 0.1 (2) |
| C16—C3—C4—C5 | 177.26 (11) | C2—C3—C16—C17 | 175.93 (12) |
| C1—N1—C5—C4 | 0.9 (2) | C4—C3—C16—C17 | −2.3 (2) |
| C3—C4—C5—N1 | −0.1 (2) | C3—C16—C17—C18 | −177.16 (11) |
| C10—N2—C6—C7 | 0.60 (19) | C16—C17—C18—C19 | −179.16 (12) |
| N2—C6—C7—C8 | −0.2 (2) | C17—C18—C19—C20 | 177.79 (11) |
| C6—C7—C8—C9 | −0.64 (17) | C18—C19—C20—C21 | −176.06 (13) |
| C6—C7—C8—C21 | 177.48 (11) | C19—C20—C21—C8 | 175.54 (11) |
| C7—C8—C9—C10 | 1.12 (17) | C9—C8—C21—C20 | −1.5 (2) |
| C21—C8—C9—C10 | −176.93 (11) | C7—C8—C21—C20 | −179.51 (12) |
| C6—N2—C10—C9 | −0.08 (19) | C12—C13—C22—C23 | 175.18 (13) |
| C8—C9—C10—N2 | −0.8 (2) | C14—C13—C22—C23 | −1.3 (2) |
| C15—N3—C11—C12 | −0.6 (2) | C13—C22—C23—C24 | −173.53 (11) |
| N3—C11—C12—C13 | −1.0 (2) | C22—C23—C24—C24i | 177.66 (15) |
| C11—C12—C13—C14 | 2.12 (18) |
Symmetry codes: (i) −x+1, −y+2, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG2615).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029092/ng2615sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029092/ng2615Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



