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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jul 25;65(Pt 8):o2003. doi: 10.1107/S1600536809029018

3-(6-Methyl-2-pyrid­yl)-2-phen­oxy-3,4-dihydro-1,3,2-benzoxaza­phosphirine 2-oxide

Rajni Kant a,*, Sabeta Kohli a, Lovely Sarmal a, M Krishnaiah b, V H H Surendra Babu b
PMCID: PMC2977249  PMID: 21583674

Abstract

In the title compound, C19H17N2O3P, the six-membered 1,3,2-oxaza­phospho­rine ring adopts a twist-boat conformation with the phosphoryl O atom in an equatorial position. The P=O(oxide) bond length is 1.457 (1) Å and the average value of the P—O distances is 1.588 Å. The crystal structure is stabilized by C—H⋯O and C—H⋯π inter­actions.

Related literature

For the chemistry of organophospho­rus heterocyclic compounds, see: Przybylski et al. (1977); Riffel et al. (1984); Kleemann & Fluck (1985); Bettemann et al. (1987); He et al. (1998).graphic file with name e-65-o2003-scheme1.jpg

Experimental

Crystal data

  • C19H17N2O3P

  • M r = 352.33

  • Monoclinic, Inline graphic

  • a = 9.2852 (7) Å

  • b = 14.2972 (11) Å

  • c = 13.3446 (8) Å

  • β = 104.545 (7)°

  • V = 1714.8 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.18 mm−1

  • T = 293 K

  • 0.30 × 0.24 × 0.18 mm

Data collection

  • Oxford Diffraction Xcalibur diffractometer

  • Absorption correction: none

  • 14565 measured reflections

  • 4922 independent reflections

  • 4064 reflections with I > 2σ(I)

  • R int = 0.017

Refinement

  • R[F 2 > 2σ(F 2)] = 0.055

  • wR(F 2) = 0.149

  • S = 1.08

  • 4922 reflections

  • 227 parameters

  • H-atom parameters constrained

  • Δρmax = 0.53 e Å−3

  • Δρmin = −0.35 e Å−3

Data collection: CrysAlis Pro (Oxford Diffraction, 2007); cell refinement: CrysAlis Pro; data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029018/jh2088sup1.cif

e-65-o2003-sup1.cif (17KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029018/jh2088Isup2.hkl

e-65-o2003-Isup2.hkl (236.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O3i 0.93 2.57 3.497 (3) 174
C9—H9⋯O2i 0.93 2.82 3.706 (2) 159
C7—H7A⋯O3i 0.97 2.85 3.425 (2) 119
C3—H3⋯O1ii 0.93 2.81 3.373 (3) 120
C11—H11⋯O3iii 0.93 2.66 3.561 (2) 165
C6—H6C⋯O2iv 0.96 2.81 3.443 (3) 124
C18—H18⋯N2iv 0.93 2.92 3.818 (5) 163
C10—H10⋯Cg2iii 0.93 2.78 3.437 (2) 128

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic. Cg2 is the centroid of the N1,C1–C5 ring.

Acknowledgments

The authors are grateful to the Department of Science and Technology of the Government of India for funding under research project SR/S2/CMP-47/2003.

supplementary crystallographic information

Comment

Organophosphorus heterocycle compounds containing O and N in a six membered ring have gained much attention because of anti-cancer, anti-tumor and their most significant biological activities as pesticides and drugs(Riffel et al.1984, Kleemann et al.1985, Bettemann et al. 1987, He et al.1998).).

Various compounds of this class viz. cyclophosphamide(2-bis(2-chloroethyl)amino tetrahydro-2H-1,3,2-oxazaphosphorine 2-oxide),ifosfamide(3-(2-chloroethyl)-2-(2-chloroethylamino)tetrahydro-2H-1,3,1-oxazaphosphorine2-oxide) and trofosfamide(3-(2-chloroethyl)-2-(bis(2-chloroethyl)amino)tetrahydro-2H-1,3,2oxazaphosphorine2-oxide) act as antitumor agents (Przybylski et al.,1977).

Because of these significant properties of organophosphorus heterocycle compounds a new compound of this class, i.e., 3-(6-methyl-pyrindin-2-yl)-2-phenoxy-3, 4-dihydrobenzo[e][1,3,2]oxazaphosphirine 2-oxide[I] has been synthesized and its crystal structure is reported here.

In the title compound, [C19 H17 N2 O3 P], the six membered oxazaphosphorine ring adopts a twist boat conformation with phosphoryl oxygen atom at equatorial position. The PO(3) bond length is 1.457 (1)Å and the average value of P—O distance is 1.588 Å. The crystal structure is stabilized by C—H···O and C—H···Π interactions.

Experimental

The title compound was synthesized by adding a solution of phenylphosphorodichloridate (0.002 mole) in 25 ml of dry tetrahydrofuran dropwise over a period of twenty minutes to a stirred solution of 2-{[(6-methyl-2-pyridyl)amino]methyl}phenol (0.002 mole) and triethylamine (0.004 mole) in 30 ml of dry tetrahydrofuran at 0°C. After completion of the addition, the temperature of the reaction mixture was slowly raised to room temperature and stirred for 30 min. Later the reaction mixture was heated to 45–50°C and maintained at that temperature for three hours with stirring. Completion of the reaction was monitored by TLC analysis. Triethylamine- hydrochloride was separated from the reaction mixture by filtration and the solvent was removed under reduced pressure. The crude product was purified by column chromatography on silica gel (100–200 mesh) as adsorbent and ethyl acetate:hexane as eluent to afford pure product. Suitable colourless transparent rectangular crystals were obtained from 2-propanol by slow evaporation technique.

Refinement

All hydrogen atoms were fixed as a riding model over their respective heavier atoms and refined isotropically with distance restraints 0.93–0.97 Å

Figures

Fig. 1.

Fig. 1.

View of (I) (50% probability displacement ellipsoids)

Fig. 2.

Fig. 2.

Depiction of C—H..O interactions in the title compound(I)

Crystal data

C19H17N2O3P F(000) = 736
Mr = 352.33 Dx = 1.365 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4064 reflections
a = 9.2852 (7) Å θ = 3.2–30.1°
b = 14.2972 (11) Å µ = 0.18 mm1
c = 13.3446 (8) Å T = 293 K
β = 104.545 (7)° Rectangular, colourless
V = 1714.8 (2) Å3 0.30 × 0.24 × 0.18 mm
Z = 4

Data collection

Oxford Diffraction Xcalibur diffractometer Rint = 0.017
ω–2θ scans θmax = 30.1°, θmin = 3.2°
14565 measured reflections h = −13→13
4922 independent reflections k = −19→20
4064 reflections with I > 2σ(I) l = −18→18

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full 0 constraints
R[F2 > 2σ(F2)] = 0.055 H-atom parameters constrained
wR(F2) = 0.149 w = 1/[σ2(Fo2) + (0.0646P)2 + 0.9398P] where P = (Fo2 + 2Fc2)/3
S = 1.08 (Δ/σ)max < 0.001
4922 reflections Δρmax = 0.53 e Å3
227 parameters Δρmin = −0.35 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O3 0.05137 (15) 0.29221 (11) 0.30611 (10) 0.0431 (3)
P1 0.15450 (5) 0.32614 (3) 0.24817 (3) 0.03212 (13)
O2 0.29805 (14) 0.26052 (10) 0.27286 (10) 0.0408 (3)
N2 0.10589 (16) 0.32584 (11) 0.11909 (11) 0.0342 (3)
N1 −0.08432 (16) 0.42593 (11) 0.12856 (11) 0.0366 (3)
O1 0.22025 (15) 0.42756 (10) 0.27690 (10) 0.0409 (3)
C4 −0.0855 (2) 0.36620 (14) −0.04067 (13) 0.0391 (4)
H4 −0.0437 0.3271 −0.0814 0.047*
C13 0.40587 (19) 0.26785 (13) 0.21602 (14) 0.0358 (4)
C5 −0.02466 (18) 0.37381 (12) 0.06657 (13) 0.0320 (3)
C8 0.35786 (19) 0.27514 (13) 0.10910 (14) 0.0363 (4)
C3 −0.2102 (2) 0.41944 (15) −0.08287 (15) 0.0450 (4)
H3 −0.2522 0.4182 −0.1539 0.054*
C2 −0.2726 (2) 0.47435 (15) −0.02010 (17) 0.0471 (5)
H2 −0.3565 0.5103 −0.0482 0.057*
C9 0.4650 (2) 0.27788 (16) 0.05260 (15) 0.0439 (4)
H9 0.436 0.2836 −0.0191 0.053*
C1 −0.2078 (2) 0.47521 (14) 0.08637 (16) 0.0414 (4)
C11 0.6595 (2) 0.26582 (18) 0.21010 (19) 0.0546 (5)
H11 0.7603 0.2627 0.2432 0.065*
C14 0.2129 (2) 0.47435 (14) 0.36794 (15) 0.0417 (4)
C7 0.1947 (2) 0.27754 (18) 0.05690 (16) 0.0496 (5)
H7A 0.1803 0.309 −0.0093 0.06*
H7B 0.1586 0.2139 0.0436 0.06*
C10 0.6146 (2) 0.27217 (16) 0.10275 (18) 0.0482 (5)
H10 0.6856 0.2726 0.0644 0.058*
C12 0.5546 (2) 0.26421 (17) 0.26780 (16) 0.0499 (5)
H12 0.5836 0.2608 0.3397 0.06*
C19 0.1181 (3) 0.5491 (2) 0.3572 (3) 0.0860 (10)
H19 0.0597 0.5665 0.2926 0.103*
C6 −0.2732 (3) 0.5295 (2) 0.1604 (2) 0.0663 (7)
H6A −0.2875 0.4887 0.2143 0.099*
H6B −0.3673 0.5554 0.1241 0.099*
H6C −0.2068 0.5792 0.1904 0.099*
C16 0.2972 (7) 0.5017 (3) 0.5483 (3) 0.1263 (18)
H16 0.3597 0.4863 0.6122 0.152*
C18 0.1120 (5) 0.5980 (3) 0.4456 (5) 0.136 (2)
H18 0.0477 0.6486 0.4405 0.163*
C17 0.2005 (7) 0.5726 (4) 0.5416 (4) 0.131 (2)
H17 0.1929 0.6044 0.6008 0.157*
C15 0.3051 (4) 0.4509 (2) 0.4605 (2) 0.0841 (10)
H15 0.3724 0.4019 0.4653 0.101*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O3 0.0409 (7) 0.0518 (8) 0.0405 (7) −0.0031 (6) 0.0173 (5) 0.0077 (6)
P1 0.0333 (2) 0.0364 (2) 0.0278 (2) −0.00139 (17) 0.00979 (15) 0.00310 (16)
O2 0.0383 (6) 0.0486 (8) 0.0376 (6) 0.0065 (6) 0.0135 (5) 0.0127 (6)
N2 0.0328 (7) 0.0418 (8) 0.0282 (6) 0.0032 (6) 0.0079 (5) −0.0012 (6)
N1 0.0345 (7) 0.0399 (8) 0.0352 (7) 0.0003 (6) 0.0083 (6) −0.0003 (6)
O1 0.0492 (7) 0.0427 (7) 0.0329 (6) −0.0091 (6) 0.0145 (5) −0.0034 (5)
C4 0.0400 (9) 0.0458 (10) 0.0310 (8) −0.0047 (8) 0.0080 (7) 0.0007 (7)
C13 0.0346 (8) 0.0349 (8) 0.0392 (8) 0.0019 (7) 0.0117 (7) 0.0049 (7)
C5 0.0308 (7) 0.0337 (8) 0.0314 (7) −0.0042 (6) 0.0078 (6) 0.0019 (6)
C8 0.0342 (8) 0.0379 (9) 0.0377 (8) 0.0003 (7) 0.0107 (7) −0.0025 (7)
C3 0.0459 (10) 0.0507 (11) 0.0339 (9) −0.0058 (8) 0.0018 (7) 0.0082 (8)
C2 0.0395 (10) 0.0432 (10) 0.0534 (11) 0.0020 (8) 0.0017 (8) 0.0109 (9)
C9 0.0438 (10) 0.0511 (11) 0.0397 (9) 0.0029 (8) 0.0160 (8) −0.0003 (8)
C1 0.0385 (9) 0.0375 (9) 0.0475 (10) 0.0004 (7) 0.0096 (7) 0.0000 (8)
C11 0.0326 (9) 0.0686 (15) 0.0609 (13) 0.0015 (9) 0.0089 (9) 0.0047 (11)
C14 0.0473 (10) 0.0404 (10) 0.0404 (9) −0.0088 (8) 0.0165 (8) −0.0073 (8)
C7 0.0351 (9) 0.0737 (15) 0.0393 (9) 0.0042 (9) 0.0081 (7) −0.0191 (10)
C10 0.0389 (9) 0.0512 (12) 0.0597 (12) −0.0003 (8) 0.0221 (9) 0.0022 (10)
C12 0.0397 (10) 0.0657 (14) 0.0419 (10) 0.0061 (9) 0.0055 (8) 0.0082 (9)
C19 0.0632 (16) 0.077 (2) 0.114 (3) 0.0136 (15) 0.0152 (16) −0.0319 (19)
C6 0.0618 (14) 0.0702 (17) 0.0664 (15) 0.0237 (13) 0.0150 (12) −0.0107 (13)
C16 0.220 (5) 0.113 (3) 0.0428 (15) −0.033 (4) 0.028 (2) −0.0242 (19)
C18 0.104 (3) 0.113 (3) 0.209 (6) −0.006 (3) 0.075 (4) −0.095 (4)
C17 0.190 (5) 0.115 (3) 0.124 (4) −0.075 (4) 0.104 (4) −0.083 (3)
C15 0.129 (3) 0.0735 (18) 0.0397 (12) 0.0134 (18) 0.0022 (14) −0.0051 (12)

Geometric parameters (Å, °)

O3—P1 1.4567 (13) C1—C6 1.500 (3)
P1—O1 1.5825 (14) C11—C12 1.385 (3)
P1—O2 1.5953 (14) C11—C10 1.391 (3)
P1—N2 1.6675 (14) C11—H11 0.93
O2—C13 1.404 (2) C14—C15 1.356 (3)
N2—C5 1.416 (2) C14—C19 1.369 (4)
N2—C7 1.479 (2) C7—H7A 0.97
N1—C5 1.333 (2) C7—H7B 0.97
N1—C1 1.343 (2) C10—H10 0.93
O1—C14 1.404 (2) C12—H12 0.93
C4—C3 1.382 (3) C19—C18 1.385 (5)
C4—C5 1.405 (2) C19—H19 0.93
C4—H4 0.93 C6—H6A 0.96
C13—C12 1.381 (3) C6—H6B 0.96
C13—C8 1.388 (2) C6—H6C 0.96
C8—C9 1.391 (2) C16—C17 1.342 (7)
C8—C7 1.501 (3) C16—C15 1.396 (5)
C3—C2 1.377 (3) C16—H16 0.93
C3—H3 0.93 C18—C17 1.384 (8)
C2—C1 1.397 (3) C18—H18 0.93
C2—H2 0.93 C17—H17 0.93
C9—C10 1.385 (3) C15—H15 0.93
C9—H9 0.93
O3—P1—O1 116.20 (8) C10—C11—H11 119.9
O3—P1—O2 108.72 (8) C15—C14—C19 122.0 (3)
O1—P1—O2 103.73 (8) C15—C14—O1 120.9 (2)
O3—P1—N2 120.26 (8) C19—C14—O1 116.8 (2)
O1—P1—N2 103.92 (7) N2—C7—C8 112.96 (15)
O2—P1—N2 101.96 (7) N2—C7—H7A 109
C13—O2—P1 121.11 (11) C8—C7—H7A 109
C5—N2—C7 118.48 (14) N2—C7—H7B 109
C5—N2—P1 119.09 (12) C8—C7—H7B 109
C7—N2—P1 122.43 (12) H7A—C7—H7B 107.8
C5—N1—C1 118.50 (15) C9—C10—C11 120.42 (18)
C14—O1—P1 123.14 (12) C9—C10—H10 119.8
C3—C4—C5 117.00 (18) C11—C10—H10 119.8
C3—C4—H4 121.5 C13—C12—C11 118.40 (19)
C5—C4—H4 121.5 C13—C12—H12 120.8
C12—C13—C8 122.67 (17) C11—C12—H12 120.8
C12—C13—O2 119.08 (16) C14—C19—C18 117.9 (4)
C8—C13—O2 118.21 (15) C14—C19—H19 121
N1—C5—C4 123.51 (16) C18—C19—H19 121
N1—C5—N2 113.65 (14) C1—C6—H6A 109.5
C4—C5—N2 122.83 (16) C1—C6—H6B 109.5
C13—C8—C9 118.07 (16) H6A—C6—H6B 109.5
C13—C8—C7 120.34 (16) C1—C6—H6C 109.5
C9—C8—C7 121.58 (17) H6A—C6—H6C 109.5
C2—C3—C4 120.22 (18) H6B—C6—H6C 109.5
C2—C3—H3 119.9 C17—C16—C15 120.8 (4)
C4—C3—H3 119.9 C17—C16—H16 119.6
C3—C2—C1 118.98 (18) C15—C16—H16 119.6
C3—C2—H2 120.5 C17—C18—C19 120.9 (4)
C1—C2—H2 120.5 C17—C18—H18 119.5
C10—C9—C8 120.23 (18) C19—C18—H18 119.5
C10—C9—H9 119.9 C16—C17—C18 119.4 (3)
C8—C9—H9 119.9 C16—C17—H17 120.3
N1—C1—C2 121.71 (18) C18—C17—H17 120.3
N1—C1—C6 116.08 (18) C14—C15—C16 118.8 (4)
C2—C1—C6 122.20 (19) C14—C15—H15 120.6
C12—C11—C10 120.19 (18) C16—C15—H15 120.6
C12—C11—H11 119.9

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4···O3i 0.93 2.57 3.497 (3) 174
C9—H9···O2i 0.93 2.82 3.706 (2) 159
C7—H7A···O3i 0.97 2.85 3.425 (2) 119
C3—H3···O1ii 0.93 2.81 3.373 (3) 120
C11—H11···O3iii 0.93 2.66 3.561 (2) 165
C6—H6C···O2iv 0.96 2.81 3.443 (3) 124
C18—H18···N2iv 0.93 2.92 3.818 (5) 163
C10—H10···Cg2iii 0.93 2.78 3.437 (2) 128

Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x, −y+1, −z; (iii) x+1, y, z; (iv) −x, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JH2088).

References

  1. Bettemann, G., Look, P. & Schomburg, D. (1987). Phosphorus Sulfur, 30, 499–502.
  2. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  3. Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
  4. He, L., Zhuo, R., Cai, F. & Lu, A. (1998). Wuhan Univ. J. Nat. Sci.3, 126–128.
  5. Kleemann, S. & Fluck, E. (1985). Z. Anorg. Allg. Chem.562, 141–144.
  6. Oxford Diffraction (2007). CrysAlis Pro and CrysAlis RED Oxford Diffraction Ltd, Abingdon, Oxfordshire, England.
  7. Przybylski, M., Ringsdorf, H., Lenssen, U., Peter, G., Voelcker, G., Wagner, T. & Hohorst, H. J. (1977). Biomed. Mass Spectr.4, 209–215. [DOI] [PubMed]
  8. Riffel, H., Kleemam, S. & Hess, H. (1984). Z. Anorg. Allg. Chem.508, 61–72.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029018/jh2088sup1.cif

e-65-o2003-sup1.cif (17KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029018/jh2088Isup2.hkl

e-65-o2003-Isup2.hkl (236.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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