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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Apr 22;65(Pt 5):m557. doi: 10.1107/S160053680901438X

Aqua­(dicyanamido){μ-6,6′-dimeth­oxy-2,2′-[ethane-1,2-diylbis(nitrilo­methyl­idyne)]diphenolato}nickel(II)sodium

Wei Wang a, Yong-Miao Shen b,*
PMCID: PMC2977604  PMID: 21583790

Abstract

The mol­ecule of the title compound, [NaNi(C18H18N2O4)(C2N3)(H2O)], is approximately planar, with a maximum deviation from the mol­ecular plane of 0.770 (5) Å. The coordination environment of the Ni2+ ion is distorted square-planar and it is N2O2 coordinated by the 6,6′-dimeth­oxy-2,2′-[ethane-1,2-diylbis(nitrilo­methyl­idyne)]diphenolate Schiff base ligand. The Na+ atom is chelated by the four O atoms of the Schiff base ligand, a water ligand and a dicyanamide anion. The structure displays inter­molecular O—H⋯N hydrogen bonding.

Related literature

For chemical background, see: Ohba & Okawa (2000). For related structures, see: Correia et al. (2005); Costes et al.(2004).graphic file with name e-65-0m557-scheme1.jpg

Experimental

Crystal data

  • [NaNi(C18H18N2O4)(C2N3)(H2O)]

  • M r = 492.11

  • Monoclinic, Inline graphic

  • a = 7.4654 (14) Å

  • b = 22.745 (4) Å

  • c = 13.177 (3) Å

  • β = 101.282 (4)°

  • V = 2194.2 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.95 mm−1

  • T = 293 K

  • 0.14 × 0.13 × 0.11 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003) T min = 0.879, T max = 0.903

  • 10817 measured reflections

  • 3864 independent reflections

  • 2815 reflections with I > 2σ(I)

  • R int = 0.032

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.099

  • S = 1.02

  • 3864 reflections

  • 291 parameters

  • 54 restraints

  • H-atom parameters constrained

  • Δρmax = 0.33 e Å−3

  • Δρmin = −0.35 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901438X/hg2500sup1.cif

e-65-0m557-sup1.cif (20.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680901438X/hg2500Isup2.hkl

e-65-0m557-Isup2.hkl (189.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5A⋯N3i 0.82 2.14 2.960 (4) 175
O5—H5B⋯N4ii 0.82 2.03 2.852 (4) 177

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Zhejiang Provincial Natural Science Foundation (grant No. Y4080395).

supplementary crystallographic information

Comment

The dicyanamide ligand N(CN)2, has attracted continuous attention in the past four years for the buildup of interesting extended architectures. Its versatile coordination behavior and its ability to organize solids into polymeric structures with a rich diversity of magnetic properties have attracted interest toward this research area (Ohba et al., 2000). N,N-disalicylideneethylenediamine type Schiff bases ligands present versatile steric, electronic and lipophilic properties (Correia et al. 2005). We report here the synthesis and crystal structure of the title compound. The molecular structure is shown in Fig. 1. The values of the geometric parameters in this compound are normal (Costes et al., 2004). NiII and NaI are connected via two bridging O atoms of the ligand. The six-coordinate Na atom adopts a distorted octahedral coordination geometry while the four-coordinate Ni gives a planar coordination geometry.

Experimental

A mixture of 6,6'-dimethoxy-2,2'-(ethane-1,2-diyldiiminodimethylene)diphenol (1 mmol) and nickel chloride (1 mmol) in methanol (15 ml) was stirred for 30 min and sodium dicyanamide (1 mmol) was added, stirred for another 15 min and then filtered. The resulting clear orange solution was vapor at room temperature for 7 d, after which large orange block-shaped crystals of the title complex suitable for X-ray diffraction analysis were obtained.

Refinement

The H atoms were fixed geometrically and were treated as riding on their parent C atoms, with C—H distances in the range of 0.93–0.97 Å and with Uiso(H) = 1.2Ueq(parent atom), or Uiso(H) = 1.5Ueq(Cmethyl).

Figures

Fig. 1.

Fig. 1.

The independent molecules of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme.

Crystal data

[NaNi(C18H18N2O4)(C2N3)(H2O)] F(000) = 1016
Mr = 492.11 Dx = 1.490 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3120 reflections
a = 7.4654 (14) Å θ = 2.5–24.6°
b = 22.745 (4) Å µ = 0.95 mm1
c = 13.177 (3) Å T = 293 K
β = 101.282 (4)° Block, orange
V = 2194.2 (8) Å3 0.14 × 0.13 × 0.11 mm
Z = 4

Data collection

Bruker SMART CCD area-detector diffractometer 3864 independent reflections
Radiation source: fine-focus sealed tube 2815 reflections with I > 2σ(I)
graphite Rint = 0.032
φ and ω scans θmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) h = −8→8
Tmin = 0.879, Tmax = 0.903 k = −26→27
10817 measured reflections l = −15→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099 H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0455P)2 + 0.4335P] where P = (Fo2 + 2Fc2)/3
3864 reflections (Δ/σ)max = 0.001
291 parameters Δρmax = 0.33 e Å3
54 restraints Δρmin = −0.35 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 0.24893 (5) 0.506776 (16) 0.06029 (3) 0.04684 (15)
Na1 0.36614 (16) 0.38280 (5) 0.20328 (9) 0.0527 (3)
O1 0.2723 (3) 0.48215 (8) 0.19509 (16) 0.0545 (5)
O2 0.3315 (3) 0.43203 (8) 0.03988 (15) 0.0497 (5)
O3 0.3154 (4) 0.42650 (10) 0.36882 (17) 0.0732 (7)
O4 0.4284 (3) 0.32315 (9) 0.04958 (19) 0.0655 (6)
O5 0.1624 (3) 0.30933 (10) 0.21624 (17) 0.0731 (7)
H5A 0.1005 0.3032 0.2601 0.088*
H5B 0.1305 0.2871 0.1665 0.088*
N1 0.1665 (3) 0.58076 (11) 0.0844 (2) 0.0584 (7)
N2 0.2232 (3) 0.52892 (13) −0.0760 (2) 0.0589 (7)
N3 0.9189 (4) 0.28821 (17) 0.3648 (3) 0.0917 (9)
N4 1.0360 (5) 0.26666 (15) 0.5450 (3) 0.0888 (10)
N5 0.6431 (5) 0.34246 (17) 0.2954 (3) 0.0934 (9)
C1 0.3049 (4) 0.43665 (18) −0.1445 (3) 0.0652 (10)
C2 0.3415 (4) 0.40716 (15) −0.0485 (2) 0.0511 (8)
C3 0.3908 (4) 0.34689 (15) −0.0474 (3) 0.0601 (9)
C4 0.4007 (6) 0.3183 (2) −0.1377 (4) 0.0885 (13)
H4 0.4321 0.2787 −0.1361 0.106*
C5 0.3642 (7) 0.3480 (3) −0.2315 (4) 0.1134 (17)
H5 0.3708 0.3281 −0.2923 0.136*
C6 0.3189 (6) 0.4060 (3) −0.2353 (3) 0.0998 (15)
H6 0.2969 0.4256 −0.2985 0.120*
C7 0.2509 (5) 0.49684 (19) −0.1515 (3) 0.0694 (11)
H7 0.2342 0.5144 −0.2164 0.083*
C8 0.4977 (6) 0.26446 (15) 0.0610 (3) 0.0903 (13)
H8A 0.4044 0.2375 0.0292 0.135*
H8B 0.5337 0.2553 0.1332 0.135*
H8C 0.6014 0.2611 0.0283 0.135*
C9 0.1804 (5) 0.57147 (14) 0.2674 (3) 0.0631 (9)
C10 0.2389 (4) 0.51231 (13) 0.2744 (3) 0.0524 (8)
C11 0.2599 (5) 0.48361 (15) 0.3708 (3) 0.0615 (9)
C12 0.2255 (6) 0.5127 (2) 0.4565 (3) 0.0842 (12)
H12 0.2398 0.4933 0.5196 0.101*
C13 0.1694 (7) 0.5711 (2) 0.4492 (4) 0.0982 (14)
H13 0.1469 0.5905 0.5076 0.118*
C14 0.1473 (6) 0.59969 (18) 0.3580 (4) 0.0854 (12)
H14 0.1095 0.6387 0.3543 0.102*
C15 0.3392 (6) 0.39343 (19) 0.4619 (3) 0.0919 (13)
H15A 0.4253 0.4130 0.5147 0.138*
H15B 0.3841 0.3550 0.4502 0.138*
H15C 0.2241 0.3900 0.4836 0.138*
C17 0.1111 (6) 0.61685 (18) −0.0096 (4) 0.0889 (13)
H16A −0.0209 0.6203 −0.0257 0.107*
H16B 0.1619 0.6560 0.0028 0.107*
C18 0.1737 (7) 0.59090 (18) −0.0957 (4) 0.0952 (14)
H17A 0.2791 0.6124 −0.1086 0.114*
H17B 0.0782 0.5938 −0.1571 0.114*
C19 0.9741 (5) 0.27798 (17) 0.4624 (3) 0.0681 (9)
C20 0.7695 (6) 0.31745 (18) 0.3323 (3) 0.0762 (9)
C16 0.1480 (5) 0.60153 (15) 0.1717 (3) 0.0691 (10)
H20 0.1091 0.6404 0.1724 0.083*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.0435 (2) 0.0440 (2) 0.0519 (3) −0.00269 (17) 0.00649 (17) 0.00924 (18)
Na1 0.0576 (7) 0.0475 (7) 0.0521 (7) 0.0048 (6) 0.0090 (6) 0.0046 (5)
O1 0.0737 (15) 0.0407 (11) 0.0502 (13) 0.0055 (10) 0.0146 (11) −0.0009 (10)
O2 0.0576 (13) 0.0493 (12) 0.0426 (12) 0.0010 (10) 0.0109 (10) 0.0014 (9)
O3 0.115 (2) 0.0601 (15) 0.0482 (14) 0.0084 (14) 0.0235 (13) 0.0051 (11)
O4 0.0800 (16) 0.0474 (13) 0.0746 (17) −0.0003 (11) 0.0284 (13) −0.0082 (12)
O5 0.0885 (17) 0.0713 (15) 0.0650 (16) −0.0195 (13) 0.0290 (13) −0.0105 (12)
N1 0.0475 (16) 0.0432 (15) 0.081 (2) −0.0028 (12) 0.0046 (14) 0.0120 (15)
N2 0.0461 (16) 0.0653 (18) 0.0625 (19) −0.0061 (13) 0.0036 (14) 0.0215 (15)
N3 0.0765 (19) 0.131 (2) 0.0687 (18) 0.0310 (17) 0.0164 (15) 0.0124 (18)
N4 0.099 (2) 0.085 (2) 0.076 (2) 0.0171 (19) 0.0042 (18) 0.0172 (18)
N5 0.0782 (19) 0.125 (2) 0.0725 (19) 0.0268 (18) 0.0037 (16) 0.0108 (17)
C1 0.046 (2) 0.100 (3) 0.049 (2) −0.0013 (19) 0.0089 (15) −0.001 (2)
C2 0.0405 (17) 0.070 (2) 0.0432 (19) −0.0088 (16) 0.0099 (14) −0.0071 (16)
C3 0.056 (2) 0.067 (2) 0.060 (2) −0.0097 (17) 0.0196 (17) −0.0206 (19)
C4 0.088 (3) 0.097 (3) 0.083 (3) −0.003 (2) 0.023 (2) −0.034 (3)
C5 0.119 (4) 0.159 (5) 0.066 (3) 0.015 (4) 0.027 (3) −0.038 (3)
C6 0.097 (3) 0.160 (5) 0.044 (2) 0.008 (3) 0.018 (2) −0.009 (3)
C7 0.051 (2) 0.108 (3) 0.048 (2) −0.007 (2) 0.0077 (16) 0.021 (2)
C8 0.111 (3) 0.045 (2) 0.124 (4) 0.000 (2) 0.045 (3) −0.009 (2)
C9 0.057 (2) 0.052 (2) 0.079 (3) 0.0015 (16) 0.0093 (18) −0.0180 (19)
C10 0.0513 (19) 0.0493 (18) 0.057 (2) −0.0025 (15) 0.0122 (15) −0.0081 (16)
C11 0.066 (2) 0.065 (2) 0.056 (2) −0.0009 (18) 0.0165 (17) −0.0114 (18)
C12 0.097 (3) 0.100 (3) 0.057 (3) 0.000 (3) 0.019 (2) −0.018 (2)
C13 0.111 (4) 0.099 (4) 0.088 (4) 0.006 (3) 0.027 (3) −0.043 (3)
C14 0.083 (3) 0.071 (3) 0.102 (3) 0.015 (2) 0.016 (2) −0.033 (3)
C15 0.124 (4) 0.096 (3) 0.058 (2) 0.001 (3) 0.025 (2) 0.022 (2)
C17 0.079 (3) 0.075 (3) 0.113 (4) 0.017 (2) 0.018 (3) 0.047 (3)
C18 0.108 (3) 0.080 (3) 0.094 (3) 0.005 (3) 0.011 (3) 0.041 (3)
C19 0.0625 (19) 0.080 (2) 0.0614 (18) 0.0125 (16) 0.0121 (16) 0.0107 (18)
C20 0.068 (2) 0.105 (2) 0.0550 (18) 0.0168 (19) 0.0113 (16) 0.0098 (18)
C16 0.061 (2) 0.0391 (18) 0.102 (3) 0.0030 (16) 0.004 (2) −0.006 (2)

Geometric parameters (Å, °)

Ni1—O1 1.838 (2) C3—C4 1.371 (5)
Ni1—N2 1.839 (3) C4—C5 1.387 (6)
Ni1—N1 1.840 (3) C4—H4 0.9300
Ni1—O2 1.8457 (19) C5—C6 1.361 (7)
Na1—O5 2.288 (2) C5—H5 0.9300
Na1—O1 2.362 (2) C6—H6 0.9300
Na1—N5 2.368 (4) C7—H7 0.9300
Na1—O2 2.395 (2) C8—H8A 0.9600
Na1—O3 2.492 (3) C8—H8B 0.9600
Na1—O4 2.555 (2) C8—H8C 0.9600
O1—C10 1.314 (4) C9—C10 1.412 (4)
O2—C2 1.310 (3) C9—C16 1.413 (5)
O3—C11 1.365 (4) C9—C14 1.419 (5)
O3—C15 1.420 (4) C10—C11 1.410 (5)
O4—C3 1.365 (4) C11—C12 1.375 (5)
O4—C8 1.429 (4) C12—C13 1.389 (6)
O5—H5A 0.8200 C12—H12 0.9300
O5—H5B 0.8246 C13—C14 1.349 (6)
N1—C16 1.276 (4) C13—H13 0.9300
N1—C17 1.476 (4) C14—H14 0.9300
N2—C7 1.282 (4) C15—H15A 0.9600
N2—C18 1.468 (5) C15—H15B 0.9600
N3—C19 1.292 (5) C15—H15C 0.9600
N3—C20 1.297 (5) C17—C18 1.436 (6)
N4—C19 1.127 (4) C17—H16A 0.9700
N5—C20 1.127 (4) C17—H16B 0.9700
C1—C6 1.405 (5) C18—H17A 0.9700
C1—C2 1.411 (5) C18—H17B 0.9700
C1—C7 1.425 (5) C16—H20 0.9300
C2—C3 1.419 (5)
O1—Ni1—N2 178.09 (11) C6—C5—C4 120.6 (4)
O1—Ni1—N1 94.79 (11) C6—C5—H5 119.7
N2—Ni1—N1 86.76 (14) C4—C5—H5 119.7
O1—Ni1—O2 83.62 (9) C5—C6—C1 120.5 (4)
N2—Ni1—O2 94.82 (11) C5—C6—H6 119.7
N1—Ni1—O2 178.41 (11) C1—C6—H6 119.7
O5—Na1—O1 120.42 (9) N2—C7—C1 125.7 (3)
O5—Na1—N5 101.85 (12) N2—C7—H7 117.1
O1—Na1—N5 127.99 (12) C1—C7—H7 117.1
O5—Na1—O2 116.86 (9) O4—C8—H8A 109.5
O1—Na1—O2 62.15 (7) O4—C8—H8B 109.5
N5—Na1—O2 124.88 (11) H8A—C8—H8B 109.5
O5—Na1—O3 90.51 (9) O4—C8—H8C 109.5
O1—Na1—O3 64.15 (8) H8A—C8—H8C 109.5
N5—Na1—O3 88.43 (11) H8B—C8—H8C 109.5
O2—Na1—O3 126.30 (8) C10—C9—C16 121.1 (3)
O5—Na1—O4 84.15 (8) C10—C9—C14 118.6 (4)
O1—Na1—O4 124.77 (9) C16—C9—C14 120.2 (4)
N5—Na1—O4 85.68 (11) O1—C10—C11 118.0 (3)
O2—Na1—O4 62.63 (7) O1—C10—C9 123.4 (3)
O3—Na1—O4 171.07 (9) C11—C10—C9 118.6 (3)
C10—O1—Ni1 127.8 (2) O3—C11—C12 125.5 (4)
C10—O1—Na1 124.3 (2) O3—C11—C10 113.8 (3)
Ni1—O1—Na1 107.87 (9) C12—C11—C10 120.7 (4)
C2—O2—Ni1 127.3 (2) C11—C12—C13 120.4 (4)
C2—O2—Na1 125.61 (19) C11—C12—H12 119.8
Ni1—O2—Na1 106.26 (9) C13—C12—H12 119.8
C11—O3—C15 118.3 (3) C14—C13—C12 120.3 (4)
C11—O3—Na1 119.68 (19) C14—C13—H13 119.8
C15—O3—Na1 122.0 (2) C12—C13—H13 119.8
C3—O4—C8 118.2 (3) C13—C14—C9 121.3 (4)
C3—O4—Na1 119.73 (19) C13—C14—H14 119.3
C8—O4—Na1 122.1 (2) C9—C14—H14 119.3
Na1—O5—H5A 130.6 O3—C15—H15A 109.5
Na1—O5—H5B 118.8 O3—C15—H15B 109.5
H5A—O5—H5B 110.0 H15A—C15—H15B 109.5
C16—N1—C17 119.2 (3) O3—C15—H15C 109.5
C16—N1—Ni1 126.4 (2) H15A—C15—H15C 109.5
C17—N1—Ni1 114.3 (3) H15B—C15—H15C 109.5
C7—N2—C18 118.9 (3) C18—C17—N1 110.7 (3)
C7—N2—Ni1 126.8 (3) C18—C17—H16A 109.5
C18—N2—Ni1 114.2 (3) N1—C17—H16A 109.5
C19—N3—C20 120.5 (3) C18—C17—H16B 109.5
C20—N5—Na1 171.8 (4) N1—C17—H16B 109.5
C6—C1—C2 119.6 (4) H16A—C17—H16B 108.1
C6—C1—C7 119.2 (4) C17—C18—N2 111.4 (3)
C2—C1—C7 121.1 (3) C17—C18—H17A 109.4
O2—C2—C1 123.9 (3) N2—C18—H17A 109.4
O2—C2—C3 117.9 (3) C17—C18—H17B 109.4
C1—C2—C3 118.2 (3) N2—C18—H17B 109.4
O4—C3—C4 126.1 (4) H17A—C18—H17B 108.0
O4—C3—C2 113.4 (3) N4—C19—N3 173.6 (4)
C4—C3—C2 120.4 (4) N5—C20—N3 173.8 (4)
C3—C4—C5 120.5 (4) N1—C16—C9 126.5 (3)
C3—C4—H4 119.7 N1—C16—H20 116.7
C5—C4—H4 119.7 C9—C16—H20 116.7

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O5—H5A···N3i 0.82 2.14 2.960 (4) 175
O5—H5B···N4ii 0.82 2.03 2.852 (4) 177

Symmetry codes: (i) x−1, y, z; (ii) x−1, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2500).

References

  1. Bruker (2001). SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2004). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Correia, I., Duarte, M. T., Piedade, M. F. M., Jackush, T., Kiss, T., Castro, M. M., Geraldes, C. A., Carlos, F. G. C. & Avecilla, F. (2005). Eur. J. Inorg. Chem. pp. 732–744.
  4. Costes, J.-P., Novitchi, G., Shova, S., Dahan, F., Donnadieu, B. & Tuchagues, J.-P. (2004). Inorg. Chem.43, 7792–7799. [DOI] [PubMed]
  5. Ohba, M. & Okawa, H. (2000). Coord. Chem. Rev.198, 313–328.
  6. Sheldrick, G. M. (2003). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901438X/hg2500sup1.cif

e-65-0m557-sup1.cif (20.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680901438X/hg2500Isup2.hkl

e-65-0m557-Isup2.hkl (189.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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