Abstract
In the title compound, C16H10N4O4, the two pyridine rings are twisted by 44.41 (2)° and the ester groups form dihedral angles of 48.77 (4) and 45.75 (2)° with the corresponding pyridine rings. The crystal structure is stabilized by intermolecular C—H⋯O hydrogen bonds and π–π stacking interactions between the pyridine rings [centroid-to-centroid distance 3.797 (2) Å].
Related literature
For the synthetic procedures relevant to preparation of the title compound, see: Tichy et al. (1995 ▶); Glaup et al. (2005 ▶); Heirtzler (1999 ▶)
Experimental
Crystal data
C16H10N4O4
M r = 322.28
Triclinic,
a = 8.201 (3) Å
b = 10.302 (6) Å
c = 10.768 (3) Å
α = 109.148 (4)°
β = 106.091 (3)°
γ = 100.404 (5)°
V = 787.9 (6) Å3
Z = 2
Mo Kα radiation
μ = 0.10 mm−1
T = 296 K
0.49 × 0.45 × 0.41 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.960
5613 measured reflections
2845 independent reflections
2391 reflections with I > 2σ(I)
R int = 0.014
Refinement
R[F 2 > 2σ(F 2)] = 0.034
wR(F 2) = 0.094
S = 1.05
2845 reflections
218 parameters
H-atom parameters constrained
Δρmax = 0.15 e Å−3
Δρmin = −0.12 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012446/gk2200sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012446/gk2200Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C4—H4A⋯O4i | 0.93 | 2.39 | 3.222 (3) | 149 |
Symmetry code: (i)
.
Acknowledgments
We are grateful to the National Natural Science Foundation of China (grant No. 20872057) and the Natural Science Foundation of Henan Province (No. 082300420040) for financial support.
supplementary crystallographic information
Comment
Binicotinic acid and its derivatives have been proved to be a kind of multifunctional and flexible ligand in the construction of complexes possessing novel and interesting topological structures. Our interest in these compounds has led us to prepare the title compound. First, we synthesized dimethyl 2,2'-bipyridine-3,3'-dicarboxylate 1,1'-dioxide according to the reported method (Tichy et al. 1995). Second, the incorporation of cyano group onto 6 and 6' positions of the above compound could be readily performed when adopting the literature methods (Glaup et al. 2005; Heirtzler 1999). In this contribution, we report the synthesis and crystal structure of the title compound.
The asymmetric unit of the title compound contains one molecule (Fig. 1.). In the crystal structure, the most striking feature of the title compound is the interesting arrangement of the title molecules, which are linked into centrosymmetric dimers by formation of intermolecular C—H···O hydrogen bonds, in which C4—H4A is a donor and O4 is an acceptor (Table 1, Fig. 2). Short π···π contacts between two pyridine rings with centroid-centroid distance of 3.797 (2) Å are observed in the structure.
Experimental
To an ice-cooled solution of dimethyl 2,2'-bipyridine-3,3'-dicarboxylate 1,1'-dioxide (1.22 g, 4 mmol) and trimethylsilyl cyanide (5.2 ml, 40 mmol) in ca 40 ml dry CH2Cl2 under N2 was carefully added benzoyl chloride (1.9 ml, 17 mmol). After stirring overnight at room temperature, 10% aq Na2CO3 was carefully added to the chilled reaction mixture and it was concentrated at 200 mbar to complete crude product precipitation. This was collected by filtration, washed with water and dried. Purification by silica gel chromatography using 100 ~200 mesh ZCX II eluted by hexane-ethyl acetate (3:1, v/v) gave the yellow solid. The crystalline compound was obtained by slow evaporation of CH2Cl2 solution containing the title compound.
Refinement
All H atoms were positioned geometrically and treated as riding, with C—H bond lengths constrained to 0.93 Å (aromatic CH), 0.96 Å (methyl CH3), and with Uĩso~(H) = 1.2Ueq(C) or 1.5Ueq(methyl).
Figures
Fig. 1.
View of the title molecule with the atom numbering scheme and 30% probability displacement ellipsoids for non-hydrogen atoms. Hydrogen atoms are omitted for clarity.
Fig. 2.
View of the centrosymmetric dimer; C—H···O hydrogen bonds are indicated with broken lines.
Crystal data
| C16H10N4O4 | Z = 2 |
| Mr = 322.28 | F(000) = 332 |
| Triclinic, P1 | Dx = 1.358 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.201 (3) Å | Cell parameters from 2697 reflections |
| b = 10.302 (6) Å | θ = 2.4–25.5° |
| c = 10.768 (3) Å | µ = 0.10 mm−1 |
| α = 109.148 (4)° | T = 296 K |
| β = 106.091 (3)° | Block, yellow |
| γ = 100.404 (5)° | 0.49 × 0.45 × 0.41 mm |
| V = 787.9 (6) Å3 |
Data collection
| Bruker APEXII CCD diffractometer | 2845 independent reflections |
| Radiation source: fine-focus sealed tube | 2391 reflections with I > 2σ(I) |
| graphite | Rint = 0.014 |
| Detector resolution: 0 pixels mm-1 | θmax = 25.5°, θmin = 2.4° |
| phi and ω scans | h = −9→9 |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −12→12 |
| Tmin = 0.952, Tmax = 0.960 | l = −13→12 |
| 5613 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
| wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0434P)2 + 0.140P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 2845 reflections | Δρmax = 0.15 e Å−3 |
| 218 parameters | Δρmin = −0.11 e Å−3 |
| 0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.044 (4) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.24082 (14) | 0.31796 (12) | 0.50125 (12) | 0.0430 (3) | |
| N2 | 0.10699 (15) | −0.04177 (12) | 0.29318 (12) | 0.0441 (3) | |
| N3 | 0.2207 (3) | 0.64855 (17) | 0.68504 (19) | 0.0880 (5) | |
| N4 | −0.1464 (3) | −0.37966 (17) | 0.06250 (18) | 0.0918 (6) | |
| O1 | 0.21123 (14) | 0.07920 (12) | 0.04429 (10) | 0.0584 (3) | |
| O3 | 0.39330 (14) | 0.18868 (11) | 0.78250 (10) | 0.0537 (3) | |
| O4 | 0.55513 (13) | 0.24358 (11) | 0.65966 (11) | 0.0589 (3) | |
| O2 | 0.41072 (15) | 0.03548 (12) | 0.20273 (11) | 0.0611 (3) | |
| C2 | 0.28278 (17) | 0.22264 (15) | 0.28064 (14) | 0.0425 (3) | |
| C1 | 0.25460 (16) | 0.20947 (14) | 0.39931 (14) | 0.0392 (3) | |
| C12 | 0.30974 (18) | 0.10132 (15) | 0.17406 (14) | 0.0448 (3) | |
| C3 | 0.2918 (2) | 0.35319 (16) | 0.26803 (16) | 0.0520 (4) | |
| H3A | 0.3070 | 0.3642 | 0.1892 | 0.062* | |
| C4 | 0.2783 (2) | 0.46654 (16) | 0.37267 (17) | 0.0534 (4) | |
| H4A | 0.2850 | 0.5553 | 0.3668 | 0.064* | |
| C5 | 0.25452 (18) | 0.44348 (14) | 0.48638 (16) | 0.0461 (3) | |
| C11 | 0.2373 (2) | 0.55804 (17) | 0.59939 (19) | 0.0585 (4) | |
| C15 | 0.2181 (3) | −0.0415 (2) | −0.06874 (17) | 0.0693 (5) | |
| H15A | 0.1425 | −0.0479 | −0.1578 | 0.104* | |
| H15B | 0.1782 | −0.1288 | −0.0572 | 0.104* | |
| H15C | 0.3381 | −0.0277 | −0.0661 | 0.104* | |
| C9 | 0.10581 (18) | −0.19269 (14) | 0.42201 (15) | 0.0448 (3) | |
| H9A | 0.0618 | −0.2823 | 0.4223 | 0.054* | |
| C7 | 0.28339 (16) | 0.05361 (13) | 0.54006 (13) | 0.0379 (3) | |
| C6 | 0.21790 (16) | 0.06783 (13) | 0.41195 (14) | 0.0382 (3) | |
| C8 | 0.22261 (18) | −0.07911 (14) | 0.54392 (15) | 0.0432 (3) | |
| H8A | 0.2603 | −0.0914 | 0.6280 | 0.052* | |
| C10 | 0.05610 (17) | −0.16976 (14) | 0.29983 (14) | 0.0436 (3) | |
| C14 | 0.42572 (18) | 0.17362 (14) | 0.66546 (14) | 0.0416 (3) | |
| C13 | −0.0581 (2) | −0.28668 (17) | 0.16696 (18) | 0.0595 (4) | |
| C16 | 0.5312 (3) | 0.2948 (2) | 0.91195 (18) | 0.0781 (6) | |
| H16D | 0.4957 | 0.2978 | 0.9904 | 0.117* | |
| H16A | 0.5497 | 0.3878 | 0.9077 | 0.117* | |
| H16B | 0.6398 | 0.2692 | 0.9235 | 0.117* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0426 (6) | 0.0382 (6) | 0.0467 (7) | 0.0097 (5) | 0.0153 (5) | 0.0172 (5) |
| N2 | 0.0445 (6) | 0.0400 (6) | 0.0427 (7) | 0.0101 (5) | 0.0113 (5) | 0.0153 (5) |
| N3 | 0.1169 (15) | 0.0572 (10) | 0.0928 (13) | 0.0325 (10) | 0.0510 (11) | 0.0193 (9) |
| N4 | 0.0980 (13) | 0.0583 (10) | 0.0702 (11) | 0.0005 (9) | 0.0005 (10) | 0.0035 (9) |
| O1 | 0.0661 (7) | 0.0712 (7) | 0.0413 (6) | 0.0318 (6) | 0.0166 (5) | 0.0232 (5) |
| O3 | 0.0612 (6) | 0.0478 (6) | 0.0391 (5) | 0.0067 (5) | 0.0151 (5) | 0.0092 (5) |
| O4 | 0.0460 (6) | 0.0583 (7) | 0.0626 (7) | 0.0006 (5) | 0.0143 (5) | 0.0246 (6) |
| O2 | 0.0594 (7) | 0.0714 (7) | 0.0530 (6) | 0.0332 (6) | 0.0153 (5) | 0.0225 (6) |
| C2 | 0.0385 (7) | 0.0450 (8) | 0.0438 (8) | 0.0108 (6) | 0.0120 (6) | 0.0209 (6) |
| C1 | 0.0361 (7) | 0.0385 (7) | 0.0406 (7) | 0.0093 (5) | 0.0106 (5) | 0.0167 (6) |
| C12 | 0.0417 (7) | 0.0506 (8) | 0.0437 (8) | 0.0114 (6) | 0.0155 (6) | 0.0220 (7) |
| C3 | 0.0543 (9) | 0.0559 (9) | 0.0567 (9) | 0.0159 (7) | 0.0229 (7) | 0.0335 (8) |
| C4 | 0.0556 (9) | 0.0434 (8) | 0.0701 (10) | 0.0160 (7) | 0.0239 (8) | 0.0317 (8) |
| C5 | 0.0422 (7) | 0.0380 (7) | 0.0571 (9) | 0.0109 (6) | 0.0168 (6) | 0.0191 (7) |
| C11 | 0.0652 (10) | 0.0415 (9) | 0.0706 (11) | 0.0165 (7) | 0.0269 (8) | 0.0225 (8) |
| C15 | 0.0746 (11) | 0.0858 (13) | 0.0416 (9) | 0.0346 (10) | 0.0174 (8) | 0.0161 (9) |
| C9 | 0.0437 (7) | 0.0360 (7) | 0.0567 (9) | 0.0096 (6) | 0.0208 (6) | 0.0200 (7) |
| C7 | 0.0376 (7) | 0.0376 (7) | 0.0402 (7) | 0.0117 (5) | 0.0162 (6) | 0.0158 (6) |
| C6 | 0.0380 (7) | 0.0369 (7) | 0.0406 (7) | 0.0111 (5) | 0.0149 (6) | 0.0159 (6) |
| C8 | 0.0467 (7) | 0.0426 (8) | 0.0448 (8) | 0.0132 (6) | 0.0183 (6) | 0.0216 (6) |
| C10 | 0.0396 (7) | 0.0370 (7) | 0.0463 (8) | 0.0083 (6) | 0.0119 (6) | 0.0118 (6) |
| C14 | 0.0433 (7) | 0.0370 (7) | 0.0442 (8) | 0.0128 (6) | 0.0135 (6) | 0.0175 (6) |
| C13 | 0.0613 (10) | 0.0434 (9) | 0.0568 (10) | 0.0070 (7) | 0.0098 (8) | 0.0136 (8) |
| C16 | 0.0843 (13) | 0.0666 (11) | 0.0445 (10) | 0.0064 (10) | 0.0046 (9) | −0.0007 (9) |
Geometric parameters (Å, °)
| N1—C1 | 1.3328 (17) | C4—C5 | 1.378 (2) |
| N1—C5 | 1.3430 (18) | C4—H4A | 0.9300 |
| N2—C6 | 1.3322 (17) | C5—C11 | 1.451 (2) |
| N2—C10 | 1.3406 (18) | C15—H15A | 0.9600 |
| N3—C11 | 1.136 (2) | C15—H15B | 0.9600 |
| N4—C13 | 1.139 (2) | C15—H15C | 0.9600 |
| O1—C12 | 1.3252 (17) | C9—C10 | 1.376 (2) |
| O1—C15 | 1.4495 (19) | C9—C8 | 1.3786 (19) |
| O3—C14 | 1.3249 (17) | C9—H9A | 0.9300 |
| O3—C16 | 1.4483 (19) | C7—C8 | 1.3864 (19) |
| O4—C14 | 1.1999 (16) | C7—C6 | 1.4011 (18) |
| O2—C12 | 1.1997 (17) | C7—C14 | 1.4913 (19) |
| C2—C3 | 1.386 (2) | C8—H8A | 0.9300 |
| C2—C1 | 1.4038 (19) | C10—C13 | 1.447 (2) |
| C2—C12 | 1.492 (2) | C16—H16D | 0.9600 |
| C1—C6 | 1.4942 (19) | C16—H16A | 0.9600 |
| C3—C4 | 1.378 (2) | C16—H16B | 0.9600 |
| C3—H3A | 0.9300 | ||
| C1—N1—C5 | 117.06 (12) | H15A—C15—H15C | 109.5 |
| C6—N2—C10 | 117.28 (12) | H15B—C15—H15C | 109.5 |
| C12—O1—C15 | 116.20 (12) | C10—C9—C8 | 118.15 (12) |
| C14—O3—C16 | 115.67 (13) | C10—C9—H9A | 120.9 |
| C3—C2—C1 | 118.21 (13) | C8—C9—H9A | 120.9 |
| C3—C2—C12 | 120.91 (12) | C8—C7—C6 | 118.08 (12) |
| C1—C2—C12 | 120.83 (12) | C8—C7—C14 | 120.67 (12) |
| N1—C1—C2 | 122.74 (12) | C6—C7—C14 | 121.05 (11) |
| N1—C1—C6 | 115.11 (11) | N2—C6—C7 | 122.92 (12) |
| C2—C1—C6 | 121.83 (12) | N2—C6—C1 | 114.08 (11) |
| O2—C12—O1 | 124.85 (14) | C7—C6—C1 | 122.83 (12) |
| O2—C12—C2 | 124.19 (13) | C9—C8—C7 | 119.38 (13) |
| O1—C12—C2 | 110.93 (12) | C9—C8—H8A | 120.3 |
| C4—C3—C2 | 119.75 (13) | C7—C8—H8A | 120.3 |
| C4—C3—H3A | 120.1 | N2—C10—C9 | 124.06 (12) |
| C2—C3—H3A | 120.1 | N2—C10—C13 | 115.18 (13) |
| C3—C4—C5 | 117.53 (13) | C9—C10—C13 | 120.76 (13) |
| C3—C4—H4A | 121.2 | O4—C14—O3 | 125.10 (13) |
| C5—C4—H4A | 121.2 | O4—C14—C7 | 123.42 (13) |
| N1—C5—C4 | 124.68 (13) | O3—C14—C7 | 111.43 (11) |
| N1—C5—C11 | 115.08 (13) | N4—C13—C10 | 179.1 (2) |
| C4—C5—C11 | 120.23 (13) | O3—C16—H16D | 109.5 |
| N3—C11—C5 | 178.05 (19) | O3—C16—H16A | 109.5 |
| O1—C15—H15A | 109.5 | H16D—C16—H16A | 109.5 |
| O1—C15—H15B | 109.5 | O3—C16—H16B | 109.5 |
| H15A—C15—H15B | 109.5 | H16D—C16—H16B | 109.5 |
| O1—C15—H15C | 109.5 | H16A—C16—H16B | 109.5 |
| C5—N1—C1—C2 | 0.20 (19) | C8—C7—C6—N2 | −3.22 (19) |
| C5—N1—C1—C6 | −173.30 (11) | C14—C7—C6—N2 | 171.65 (12) |
| C3—C2—C1—N1 | −1.7 (2) | C8—C7—C6—C1 | 171.66 (11) |
| C12—C2—C1—N1 | 175.79 (12) | C14—C7—C6—C1 | −13.47 (18) |
| C3—C2—C1—C6 | 171.35 (12) | N1—C1—C6—N2 | 132.04 (13) |
| C12—C2—C1—C6 | −11.14 (19) | C2—C1—C6—N2 | −41.53 (17) |
| C15—O1—C12—O2 | 5.1 (2) | N1—C1—C6—C7 | −43.25 (17) |
| C15—O1—C12—C2 | −176.63 (12) | C2—C1—C6—C7 | 143.18 (13) |
| C3—C2—C12—O2 | 129.19 (16) | C10—C9—C8—C7 | 0.99 (19) |
| C1—C2—C12—O2 | −48.3 (2) | C6—C7—C8—C9 | 2.17 (19) |
| C3—C2—C12—O1 | −49.07 (17) | C14—C7—C8—C9 | −172.72 (12) |
| C1—C2—C12—O1 | 133.48 (13) | C6—N2—C10—C9 | 2.6 (2) |
| C1—C2—C3—C4 | 1.8 (2) | C6—N2—C10—C13 | −177.41 (12) |
| C12—C2—C3—C4 | −175.66 (13) | C8—C9—C10—N2 | −3.6 (2) |
| C2—C3—C4—C5 | −0.5 (2) | C8—C9—C10—C13 | 176.48 (13) |
| C1—N1—C5—C4 | 1.3 (2) | C16—O3—C14—O4 | −2.7 (2) |
| C1—N1—C5—C11 | 179.56 (13) | C16—O3—C14—C7 | 175.13 (13) |
| C3—C4—C5—N1 | −1.1 (2) | C8—C7—C14—O4 | 130.87 (15) |
| C3—C4—C5—C11 | −179.31 (14) | C6—C7—C14—O4 | −43.86 (19) |
| C10—N2—C6—C7 | 0.86 (19) | C8—C7—C14—O3 | −46.97 (16) |
| C10—N2—C6—C1 | −174.43 (11) | C6—C7—C14—O3 | 138.30 (12) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C4—H4A···O4i | 0.93 | 2.39 | 3.222 (3) | 149 |
Symmetry codes: (i) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2200).
References
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Glaup, C., Couchet, J. M., Bedel, S., Tisnes, P. & Picard, C. (2005). J. Org. Chem.70, 2274–2284. [DOI] [PubMed]
- Heirtzler, F. R. (1999). Synlett, 8, 1203–1208.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
- Tichy, M., Zhvada, J., Podlaha, J. & Vojffsek, P. (1995). Tetrahedron Asymmetry, 6, 1279–1282.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012446/gk2200sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012446/gk2200Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


