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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Apr 18;65(Pt 5):o1075. doi: 10.1107/S1600536809013695

2-(4-Methoxy­phenyl­sulfin­yl)cyclo­hexan-1-one

Julio Zukerman-Schpector a,*, Elisângela Vinhato b, Carlos R Cerqueira Jr b, Alessandro Rodrigues b, Paulo R Olivato b
PMCID: PMC2977754  PMID: 21583890

Abstract

The cyclo­hexa­none ring in the title compound, C13H16O3S, is in a distorted chair conformation. The intra­molecular S⋯Ocarbon­yl distance is 2.814 (2) Å. Mol­ecules are connected into a two-dimensional array via C—H⋯O contacts involving the carbonyl and sulfinyl O atoms.

Related literature

For related literature, see: Zukerman-Schpector, da Silva et al. (2006). For structure analysis, see: Cremer & Pople (1975); Iulek & Zukerman-Schpector (1997). For details of synthesis, see: Bradscher et al. (1954); Zukerman-Schpector, Maganhi et al. (2006); Drabowicz & Mikolajczyk (1978).graphic file with name e-65-o1075-scheme1.jpg

Experimental

Crystal data

  • C13H16O3S

  • M r = 252.33

  • Monoclinic, Inline graphic

  • a = 11.0510 (4) Å

  • b = 10.0875 (2) Å

  • c = 11.3672 (5) Å

  • β = 93.886 (2)°

  • V = 1264.27 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 290 K

  • 0.15 × 0.10 × 0.10 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: none

  • 8283 measured reflections

  • 2872 independent reflections

  • 2508 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.113

  • S = 1.06

  • 2872 reflections

  • 155 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT and SADABS (Bruker, 2006); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999), PARST (Nardelli, 1995) and MarvinSketch (ChemAxon, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013695/tk2419sup1.cif

e-65-o1075-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013695/tk2419Isup2.hkl

e-65-o1075-Isup2.hkl (138.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1⋯O2i 0.98 2.47 3.257 (2) 137
C3—H3A⋯O2i 0.97 2.59 3.323 (2) 133
C11—H11⋯O1ii 0.93 2.59 3.500 (2) 167

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We thank FAPESP (grant No. 2008/02531-5 to JZ-S), CNPq and CAPES for financial support. Professor R. A. Burrow of the Federal University of Santa Maria is gratefully acknowledged for helping with the collection of intensity data.

supplementary crystallographic information

Comment

The obtained product, which has stereogenic centres at S and C1, was a 3:1 mixture of the [C1(R)S(S)/C1(S)S(R)] and [C1(R)S(R)/C1(S)S(S)] diastereomeric sulfoxides, respectively, as determined from 1H NMR spectroscopy. From hexane/ethanol fractional crystallization, the pure [C1(R)S(S)/C1(S)S(R)] diastereomer, (I), was obtained. The cyclohexanone ring is in a distorted chair conformation as shown by the ring-puckering parameters (Cremer & Pople, 1975; Iulek & Zukerman-Schpector, 1997) q2 = 0.143 (2) Å, q3 = 0.499 (2) Å, Q = 0.519 (2) Å, φ2 = -130.9 (8)°. The methyl moiety is slightly out of the phenyl plane as shown by the C13-O3-C10-C11 torsion angle of 4.9 (2)°. The molecules are linked via intermolecular C—H···O interactions involving the carbonyl- and sulfinyl-oxygen atoms into a 2-D array (Table 1).

Experimental

The starting 2-(4-methoxyphenylthio)cyclohexanone was prepared from the reaction of 2-chlorocyclohexanone and 4-methoxythiophenol as previously reported (Bradscher et al. 1954). The sulfoxide 2-[(4-methoxybenzene)sulfinyl]cyclohexanone was prepared by oxidation of 2-(4-methoxyphenylthio)cyclohexanone (Zukerman-Schpector, Maganhi et al. 2006; Drabowicz & Mikolajczyk, 1978). A CH3OH (10 ml) solution of SeO2 (1.23 g, 11.08 mmol) and hydrogen peroxide (30% H2O2 in aqueous solution; 1.25 ml, 11.08 mmol) was added drop-wise, at 273 K, to a solution of 2-(4-methoxyphenylthio)cyclohexanone (2.62 g, 11.08 mmol) in CH3OH (5 ml). The reaction mixture was stirred at 273 K for 2 h and then at room temperature for 2 h. After completion of the reaction, a saturated aqueous NaCl solution (30 ml) was added, the aqueous layer was extracted with CH2Cl2 (3 x 20 ml) and dried over anhydrous Na2SO4. After solvent evaporation under reduced pressure, 1.39 g (5.5 mmol, yield 50%; m.p. 363–365 K) of the crude 2-[(4-methoxybenzene)sulfinyl]cyclohexanone (I) was obtained. Colourless crystals of (I) were obtained by vapour diffusion from n-hexane/acetone at 298 K.

Refinement

The H atoms were positioned with idealized geometry using a riding model with C—H = 0.93–0.98 Å, and with Uiso set to 1.2—1.5 times Ueq(parent atom).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing atom labelling scheme and displacement ellipsoids at the 50% probability level (arbitrary spheres for the H atoms).

Crystal data

C13H16O3S F(000) = 536
Mr = 252.33 Dx = 1.326 Mg m3
Monoclinic, P21/c Melting point = 363–364 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 11.0510 (4) Å Cell parameters from 5749 reflections
b = 10.0875 (2) Å θ = 1.0–27.5°
c = 11.3672 (5) Å µ = 0.25 mm1
β = 93.886 (2)° T = 290 K
V = 1264.27 (8) Å3 Irregular, colourless
Z = 4 0.15 × 0.10 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 2508 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.024
graphite θmax = 27.5°, θmin = 2.7°
φ and ω scans h = −10→14
8283 measured reflections k = −11→13
2872 independent reflections l = −12→14

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.055P)2 + 0.314P] where P = (Fo2 + 2Fc2)/3
2872 reflections (Δ/σ)max < 0.001
155 parameters Δρmax = 0.19 e Å3
0 restraints Δρmin = −0.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S 0.56721 (4) 0.34807 (4) 0.33452 (3) 0.04990 (15)
O1 0.79251 (14) 0.37910 (14) 0.46227 (15) 0.0817 (4)
O2 0.62133 (13) 0.32131 (15) 0.22034 (11) 0.0697 (4)
O3 0.05306 (12) 0.18455 (16) 0.27603 (13) 0.0739 (4)
C1 0.63097 (13) 0.22233 (13) 0.43728 (12) 0.0417 (3)
H1 0.5837 0.2239 0.5072 0.050*
C2 0.75982 (15) 0.26614 (16) 0.47557 (14) 0.0527 (4)
C3 0.84104 (17) 0.16348 (19) 0.5352 (2) 0.0672 (5)
H3A 0.8218 0.1560 0.6169 0.081*
H3B 0.9245 0.1930 0.5343 0.081*
C4 0.82992 (16) 0.02795 (18) 0.47825 (18) 0.0634 (5)
H4A 0.8630 0.0307 0.4014 0.076*
H4B 0.8762 −0.0360 0.5265 0.076*
C5 0.69875 (16) −0.01463 (16) 0.46473 (17) 0.0592 (4)
H5A 0.6662 −0.0191 0.5418 0.071*
H5B 0.6933 −0.1024 0.4299 0.071*
C6 0.62411 (16) 0.08211 (15) 0.38717 (15) 0.0546 (4)
H6A 0.5402 0.0532 0.3805 0.066*
H6B 0.6537 0.0823 0.3087 0.066*
C7 0.41425 (14) 0.29147 (14) 0.31844 (12) 0.0458 (3)
C8 0.32744 (16) 0.35031 (15) 0.38466 (14) 0.0536 (4)
H8 0.3502 0.4151 0.4400 0.064*
C9 0.20829 (17) 0.31257 (19) 0.36820 (16) 0.0599 (4)
H9 0.1504 0.3521 0.4124 0.072*
C10 0.17349 (15) 0.21533 (17) 0.28560 (14) 0.0547 (4)
C11 0.25949 (16) 0.15680 (16) 0.21873 (14) 0.0521 (4)
H11 0.2368 0.0918 0.1636 0.063*
C12 0.37932 (15) 0.19623 (15) 0.23499 (13) 0.0490 (3)
H12 0.4371 0.1585 0.1895 0.059*
C13 0.0152 (2) 0.0786 (3) 0.1988 (2) 0.0827 (6)
H13A 0.0360 0.0989 0.1202 0.124*
H13B −0.0711 0.0674 0.1995 0.124*
H13C 0.0550 −0.0018 0.2249 0.124*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S 0.0664 (3) 0.0368 (2) 0.0455 (2) −0.00370 (15) −0.00423 (17) 0.00762 (14)
O1 0.0843 (9) 0.0525 (7) 0.1038 (11) −0.0195 (7) −0.0274 (8) 0.0100 (7)
O2 0.0803 (9) 0.0861 (9) 0.0433 (6) −0.0128 (7) 0.0071 (6) 0.0172 (6)
O3 0.0567 (7) 0.0870 (10) 0.0771 (9) 0.0022 (7) −0.0026 (6) 0.0003 (7)
C1 0.0524 (8) 0.0375 (7) 0.0347 (6) 0.0003 (6) −0.0003 (5) 0.0025 (5)
C2 0.0593 (9) 0.0462 (8) 0.0517 (8) −0.0041 (7) −0.0037 (7) −0.0007 (7)
C3 0.0525 (9) 0.0611 (11) 0.0856 (13) −0.0019 (8) −0.0126 (9) 0.0083 (9)
C4 0.0613 (10) 0.0573 (10) 0.0726 (11) 0.0142 (8) 0.0112 (8) 0.0089 (9)
C5 0.0703 (11) 0.0389 (8) 0.0668 (10) 0.0034 (7) −0.0073 (8) 0.0049 (7)
C6 0.0688 (10) 0.0370 (7) 0.0560 (9) 0.0013 (7) −0.0107 (7) 0.0000 (7)
C7 0.0617 (9) 0.0356 (7) 0.0389 (7) 0.0043 (6) −0.0052 (6) 0.0052 (5)
C8 0.0712 (11) 0.0419 (8) 0.0465 (8) 0.0104 (7) −0.0038 (7) −0.0032 (6)
C9 0.0674 (10) 0.0588 (10) 0.0535 (9) 0.0166 (8) 0.0038 (8) −0.0002 (8)
C10 0.0581 (9) 0.0538 (9) 0.0511 (8) 0.0065 (7) −0.0050 (7) 0.0094 (7)
C11 0.0645 (10) 0.0448 (8) 0.0455 (8) 0.0035 (7) −0.0073 (7) −0.0008 (6)
C12 0.0622 (9) 0.0426 (8) 0.0415 (7) 0.0066 (6) −0.0013 (6) −0.0006 (6)
C13 0.0746 (13) 0.0998 (17) 0.0715 (13) −0.0175 (12) −0.0124 (10) 0.0023 (12)

Geometric parameters (Å, °)

S—O2 1.4900 (13) C5—H5A 0.9700
S—C7 1.7819 (16) C5—H5B 0.9700
S—C1 1.8325 (14) C6—H6A 0.9700
O1—C2 1.208 (2) C6—H6B 0.9700
O3—C10 1.364 (2) C7—C12 1.386 (2)
O3—C13 1.428 (3) C7—C8 1.392 (2)
C1—C6 1.525 (2) C8—C9 1.371 (3)
C1—C2 1.526 (2) C8—H8 0.9300
C1—H1 0.9800 C9—C10 1.394 (2)
C2—C3 1.501 (2) C9—H9 0.9300
C3—C4 1.514 (3) C10—C11 1.388 (2)
C3—H3A 0.9700 C11—C12 1.383 (2)
C3—H3B 0.9700 C11—H11 0.9300
C4—C5 1.510 (3) C12—H12 0.9300
C4—H4A 0.9700 C13—H13A 0.9600
C4—H4B 0.9700 C13—H13B 0.9600
C5—C6 1.520 (2) C13—H13C 0.9600
O2—S—C7 106.65 (7) C5—C6—C1 111.56 (13)
O2—S—C1 105.67 (7) C5—C6—H6A 109.3
C7—S—C1 99.48 (6) C1—C6—H6A 109.3
C10—O3—C13 117.62 (16) C5—C6—H6B 109.3
C6—C1—C2 113.39 (13) C1—C6—H6B 109.3
C6—C1—S 113.37 (10) H6A—C6—H6B 108.0
C2—C1—S 107.00 (10) C12—C7—C8 119.70 (15)
C6—C1—H1 107.6 C12—C7—S 120.69 (12)
C2—C1—H1 107.6 C8—C7—S 119.45 (12)
S—C1—H1 107.6 C9—C8—C7 119.90 (15)
O1—C2—C3 122.17 (16) C9—C8—H8 120.0
O1—C2—C1 121.24 (15) C7—C8—H8 120.0
C3—C2—C1 116.53 (14) C8—C9—C10 120.38 (16)
C2—C3—C4 113.65 (16) C8—C9—H9 119.8
C2—C3—H3A 108.8 C10—C9—H9 119.8
C4—C3—H3A 108.8 O3—C10—C11 124.06 (16)
C2—C3—H3B 108.8 O3—C10—C9 115.92 (16)
C4—C3—H3B 108.8 C11—C10—C9 120.02 (16)
H3A—C3—H3B 107.7 C12—C11—C10 119.29 (15)
C5—C4—C3 110.49 (15) C12—C11—H11 120.4
C5—C4—H4A 109.6 C10—C11—H11 120.4
C3—C4—H4A 109.6 C11—C12—C7 120.69 (15)
C5—C4—H4B 109.6 C11—C12—H12 119.7
C3—C4—H4B 109.6 C7—C12—H12 119.7
H4A—C4—H4B 108.1 O3—C13—H13A 109.5
C4—C5—C6 110.84 (14) O3—C13—H13B 109.5
C4—C5—H5A 109.5 H13A—C13—H13B 109.5
C6—C5—H5A 109.5 O3—C13—H13C 109.5
C4—C5—H5B 109.5 H13A—C13—H13C 109.5
C6—C5—H5B 109.5 H13B—C13—H13C 109.5
H5A—C5—H5B 108.1
O2—S—C1—C6 −48.31 (13) C1—S—C7—C12 −86.59 (13)
C7—S—C1—C6 62.09 (13) O2—S—C7—C8 −152.43 (12)
O2—S—C1—C2 77.46 (11) C1—S—C7—C8 97.95 (13)
C7—S—C1—C2 −172.14 (10) C12—C7—C8—C9 0.9 (2)
C6—C1—C2—O1 143.42 (18) S—C7—C8—C9 176.38 (12)
S—C1—C2—O1 17.7 (2) C7—C8—C9—C10 0.1 (2)
C6—C1—C2—C3 −39.3 (2) C13—O3—C10—C11 4.9 (2)
S—C1—C2—C3 −165.05 (14) C13—O3—C10—C9 −175.42 (17)
O1—C2—C3—C4 −140.82 (19) C8—C9—C10—O3 179.84 (15)
C1—C2—C3—C4 41.9 (2) C8—C9—C10—C11 −0.5 (2)
C2—C3—C4—C5 −51.8 (2) O3—C10—C11—C12 179.51 (15)
C3—C4—C5—C6 60.5 (2) C9—C10—C11—C12 −0.1 (2)
C4—C5—C6—C1 −58.4 (2) C10—C11—C12—C7 1.1 (2)
C2—C1—C6—C5 46.78 (19) C8—C7—C12—C11 −1.5 (2)
S—C1—C6—C5 169.06 (12) S—C7—C12—C11 −176.95 (11)
O2—S—C7—C12 23.03 (14)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C1—H1···O2i 0.98 2.47 3.257 (2) 137
C3—H3A···O2i 0.97 2.59 3.323 (2) 133
C11—H11···O1ii 0.93 2.59 3.500 (2) 167

Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2419).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst.32, 115–119.
  2. Bradscher, C. K., Brown, F. C. & Grantham, R. J. (1954). J. Am. Chem. Soc.76, 114–115.
  3. Bruker (2006). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  4. ChemAxon (2008). MarvinSketch. http://www.chemaxon.com.
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  6. Drabowicz, J. & Mikolajczyk, M. (1978). Synthesis, 10, 758–759.
  7. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  8. Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
  9. Iulek, J. & Zukerman-Schpector, J. (1997). Quim. Nova, 20, 433–434.
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  11. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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  13. Zukerman-Schpector, J., Maganhi, S., Olivato, P. R., Vinhato, E. & Cerqueira, C. R. Jr (2006). Z. Kristallogr. New Cryst. Struct.221, 165–166.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013695/tk2419sup1.cif

e-65-o1075-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013695/tk2419Isup2.hkl

e-65-o1075-Isup2.hkl (138.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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