Abstract
The cyclohexanone ring in the title compound, C13H16O3S, is in a distorted chair conformation. The intramolecular S⋯Ocarbonyl distance is 2.814 (2) Å. Molecules are connected into a two-dimensional array via C—H⋯O contacts involving the carbonyl and sulfinyl O atoms.
Related literature
For related literature, see: Zukerman-Schpector, da Silva et al. (2006 ▶). For structure analysis, see: Cremer & Pople (1975 ▶); Iulek & Zukerman-Schpector (1997 ▶). For details of synthesis, see: Bradscher et al. (1954 ▶); Zukerman-Schpector, Maganhi et al. (2006 ▶); Drabowicz & Mikolajczyk (1978 ▶).
Experimental
Crystal data
C13H16O3S
M r = 252.33
Monoclinic,
a = 11.0510 (4) Å
b = 10.0875 (2) Å
c = 11.3672 (5) Å
β = 93.886 (2)°
V = 1264.27 (8) Å3
Z = 4
Mo Kα radiation
μ = 0.25 mm−1
T = 290 K
0.15 × 0.10 × 0.10 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: none
8283 measured reflections
2872 independent reflections
2508 reflections with I > 2σ(I)
R int = 0.024
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.113
S = 1.06
2872 reflections
155 parameters
H-atom parameters constrained
Δρmax = 0.19 e Å−3
Δρmin = −0.23 e Å−3
Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT and SADABS (Bruker, 2006 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PARST (Nardelli, 1995 ▶) and MarvinSketch (ChemAxon, 2008 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013695/tk2419sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013695/tk2419Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C1—H1⋯O2i | 0.98 | 2.47 | 3.257 (2) | 137 |
| C3—H3A⋯O2i | 0.97 | 2.59 | 3.323 (2) | 133 |
| C11—H11⋯O1ii | 0.93 | 2.59 | 3.500 (2) | 167 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
We thank FAPESP (grant No. 2008/02531-5 to JZ-S), CNPq and CAPES for financial support. Professor R. A. Burrow of the Federal University of Santa Maria is gratefully acknowledged for helping with the collection of intensity data.
supplementary crystallographic information
Comment
The obtained product, which has stereogenic centres at S and C1, was a 3:1 mixture of the [C1(R)S(S)/C1(S)S(R)] and [C1(R)S(R)/C1(S)S(S)] diastereomeric sulfoxides, respectively, as determined from 1H NMR spectroscopy. From hexane/ethanol fractional crystallization, the pure [C1(R)S(S)/C1(S)S(R)] diastereomer, (I), was obtained. The cyclohexanone ring is in a distorted chair conformation as shown by the ring-puckering parameters (Cremer & Pople, 1975; Iulek & Zukerman-Schpector, 1997) q2 = 0.143 (2) Å, q3 = 0.499 (2) Å, Q = 0.519 (2) Å, φ2 = -130.9 (8)°. The methyl moiety is slightly out of the phenyl plane as shown by the C13-O3-C10-C11 torsion angle of 4.9 (2)°. The molecules are linked via intermolecular C—H···O interactions involving the carbonyl- and sulfinyl-oxygen atoms into a 2-D array (Table 1).
Experimental
The starting 2-(4-methoxyphenylthio)cyclohexanone was prepared from the reaction of 2-chlorocyclohexanone and 4-methoxythiophenol as previously reported (Bradscher et al. 1954). The sulfoxide 2-[(4-methoxybenzene)sulfinyl]cyclohexanone was prepared by oxidation of 2-(4-methoxyphenylthio)cyclohexanone (Zukerman-Schpector, Maganhi et al. 2006; Drabowicz & Mikolajczyk, 1978). A CH3OH (10 ml) solution of SeO2 (1.23 g, 11.08 mmol) and hydrogen peroxide (30% H2O2 in aqueous solution; 1.25 ml, 11.08 mmol) was added drop-wise, at 273 K, to a solution of 2-(4-methoxyphenylthio)cyclohexanone (2.62 g, 11.08 mmol) in CH3OH (5 ml). The reaction mixture was stirred at 273 K for 2 h and then at room temperature for 2 h. After completion of the reaction, a saturated aqueous NaCl solution (30 ml) was added, the aqueous layer was extracted with CH2Cl2 (3 x 20 ml) and dried over anhydrous Na2SO4. After solvent evaporation under reduced pressure, 1.39 g (5.5 mmol, yield 50%; m.p. 363–365 K) of the crude 2-[(4-methoxybenzene)sulfinyl]cyclohexanone (I) was obtained. Colourless crystals of (I) were obtained by vapour diffusion from n-hexane/acetone at 298 K.
Refinement
The H atoms were positioned with idealized geometry using a riding model with C—H = 0.93–0.98 Å, and with Uiso set to 1.2—1.5 times Ueq(parent atom).
Figures
Fig. 1.
The molecular structure of (I) showing atom labelling scheme and displacement ellipsoids at the 50% probability level (arbitrary spheres for the H atoms).
Crystal data
| C13H16O3S | F(000) = 536 |
| Mr = 252.33 | Dx = 1.326 Mg m−3 |
| Monoclinic, P21/c | Melting point = 363–364 K |
| Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
| a = 11.0510 (4) Å | Cell parameters from 5749 reflections |
| b = 10.0875 (2) Å | θ = 1.0–27.5° |
| c = 11.3672 (5) Å | µ = 0.25 mm−1 |
| β = 93.886 (2)° | T = 290 K |
| V = 1264.27 (8) Å3 | Irregular, colourless |
| Z = 4 | 0.15 × 0.10 × 0.10 mm |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 2508 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.024 |
| graphite | θmax = 27.5°, θmin = 2.7° |
| φ and ω scans | h = −10→14 |
| 8283 measured reflections | k = −11→13 |
| 2872 independent reflections | l = −12→14 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.113 | H-atom parameters constrained |
| S = 1.06 | w = 1/[σ2(Fo2) + (0.055P)2 + 0.314P] where P = (Fo2 + 2Fc2)/3 |
| 2872 reflections | (Δ/σ)max < 0.001 |
| 155 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S | 0.56721 (4) | 0.34807 (4) | 0.33452 (3) | 0.04990 (15) | |
| O1 | 0.79251 (14) | 0.37910 (14) | 0.46227 (15) | 0.0817 (4) | |
| O2 | 0.62133 (13) | 0.32131 (15) | 0.22034 (11) | 0.0697 (4) | |
| O3 | 0.05306 (12) | 0.18455 (16) | 0.27603 (13) | 0.0739 (4) | |
| C1 | 0.63097 (13) | 0.22233 (13) | 0.43728 (12) | 0.0417 (3) | |
| H1 | 0.5837 | 0.2239 | 0.5072 | 0.050* | |
| C2 | 0.75982 (15) | 0.26614 (16) | 0.47557 (14) | 0.0527 (4) | |
| C3 | 0.84104 (17) | 0.16348 (19) | 0.5352 (2) | 0.0672 (5) | |
| H3A | 0.8218 | 0.1560 | 0.6169 | 0.081* | |
| H3B | 0.9245 | 0.1930 | 0.5343 | 0.081* | |
| C4 | 0.82992 (16) | 0.02795 (18) | 0.47825 (18) | 0.0634 (5) | |
| H4A | 0.8630 | 0.0307 | 0.4014 | 0.076* | |
| H4B | 0.8762 | −0.0360 | 0.5265 | 0.076* | |
| C5 | 0.69875 (16) | −0.01463 (16) | 0.46473 (17) | 0.0592 (4) | |
| H5A | 0.6662 | −0.0191 | 0.5418 | 0.071* | |
| H5B | 0.6933 | −0.1024 | 0.4299 | 0.071* | |
| C6 | 0.62411 (16) | 0.08211 (15) | 0.38717 (15) | 0.0546 (4) | |
| H6A | 0.5402 | 0.0532 | 0.3805 | 0.066* | |
| H6B | 0.6537 | 0.0823 | 0.3087 | 0.066* | |
| C7 | 0.41425 (14) | 0.29147 (14) | 0.31844 (12) | 0.0458 (3) | |
| C8 | 0.32744 (16) | 0.35031 (15) | 0.38466 (14) | 0.0536 (4) | |
| H8 | 0.3502 | 0.4151 | 0.4400 | 0.064* | |
| C9 | 0.20829 (17) | 0.31257 (19) | 0.36820 (16) | 0.0599 (4) | |
| H9 | 0.1504 | 0.3521 | 0.4124 | 0.072* | |
| C10 | 0.17349 (15) | 0.21533 (17) | 0.28560 (14) | 0.0547 (4) | |
| C11 | 0.25949 (16) | 0.15680 (16) | 0.21873 (14) | 0.0521 (4) | |
| H11 | 0.2368 | 0.0918 | 0.1636 | 0.063* | |
| C12 | 0.37932 (15) | 0.19623 (15) | 0.23499 (13) | 0.0490 (3) | |
| H12 | 0.4371 | 0.1585 | 0.1895 | 0.059* | |
| C13 | 0.0152 (2) | 0.0786 (3) | 0.1988 (2) | 0.0827 (6) | |
| H13A | 0.0360 | 0.0989 | 0.1202 | 0.124* | |
| H13B | −0.0711 | 0.0674 | 0.1995 | 0.124* | |
| H13C | 0.0550 | −0.0018 | 0.2249 | 0.124* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S | 0.0664 (3) | 0.0368 (2) | 0.0455 (2) | −0.00370 (15) | −0.00423 (17) | 0.00762 (14) |
| O1 | 0.0843 (9) | 0.0525 (7) | 0.1038 (11) | −0.0195 (7) | −0.0274 (8) | 0.0100 (7) |
| O2 | 0.0803 (9) | 0.0861 (9) | 0.0433 (6) | −0.0128 (7) | 0.0071 (6) | 0.0172 (6) |
| O3 | 0.0567 (7) | 0.0870 (10) | 0.0771 (9) | 0.0022 (7) | −0.0026 (6) | 0.0003 (7) |
| C1 | 0.0524 (8) | 0.0375 (7) | 0.0347 (6) | 0.0003 (6) | −0.0003 (5) | 0.0025 (5) |
| C2 | 0.0593 (9) | 0.0462 (8) | 0.0517 (8) | −0.0041 (7) | −0.0037 (7) | −0.0007 (7) |
| C3 | 0.0525 (9) | 0.0611 (11) | 0.0856 (13) | −0.0019 (8) | −0.0126 (9) | 0.0083 (9) |
| C4 | 0.0613 (10) | 0.0573 (10) | 0.0726 (11) | 0.0142 (8) | 0.0112 (8) | 0.0089 (9) |
| C5 | 0.0703 (11) | 0.0389 (8) | 0.0668 (10) | 0.0034 (7) | −0.0073 (8) | 0.0049 (7) |
| C6 | 0.0688 (10) | 0.0370 (7) | 0.0560 (9) | 0.0013 (7) | −0.0107 (7) | 0.0000 (7) |
| C7 | 0.0617 (9) | 0.0356 (7) | 0.0389 (7) | 0.0043 (6) | −0.0052 (6) | 0.0052 (5) |
| C8 | 0.0712 (11) | 0.0419 (8) | 0.0465 (8) | 0.0104 (7) | −0.0038 (7) | −0.0032 (6) |
| C9 | 0.0674 (10) | 0.0588 (10) | 0.0535 (9) | 0.0166 (8) | 0.0038 (8) | −0.0002 (8) |
| C10 | 0.0581 (9) | 0.0538 (9) | 0.0511 (8) | 0.0065 (7) | −0.0050 (7) | 0.0094 (7) |
| C11 | 0.0645 (10) | 0.0448 (8) | 0.0455 (8) | 0.0035 (7) | −0.0073 (7) | −0.0008 (6) |
| C12 | 0.0622 (9) | 0.0426 (8) | 0.0415 (7) | 0.0066 (6) | −0.0013 (6) | −0.0006 (6) |
| C13 | 0.0746 (13) | 0.0998 (17) | 0.0715 (13) | −0.0175 (12) | −0.0124 (10) | 0.0023 (12) |
Geometric parameters (Å, °)
| S—O2 | 1.4900 (13) | C5—H5A | 0.9700 |
| S—C7 | 1.7819 (16) | C5—H5B | 0.9700 |
| S—C1 | 1.8325 (14) | C6—H6A | 0.9700 |
| O1—C2 | 1.208 (2) | C6—H6B | 0.9700 |
| O3—C10 | 1.364 (2) | C7—C12 | 1.386 (2) |
| O3—C13 | 1.428 (3) | C7—C8 | 1.392 (2) |
| C1—C6 | 1.525 (2) | C8—C9 | 1.371 (3) |
| C1—C2 | 1.526 (2) | C8—H8 | 0.9300 |
| C1—H1 | 0.9800 | C9—C10 | 1.394 (2) |
| C2—C3 | 1.501 (2) | C9—H9 | 0.9300 |
| C3—C4 | 1.514 (3) | C10—C11 | 1.388 (2) |
| C3—H3A | 0.9700 | C11—C12 | 1.383 (2) |
| C3—H3B | 0.9700 | C11—H11 | 0.9300 |
| C4—C5 | 1.510 (3) | C12—H12 | 0.9300 |
| C4—H4A | 0.9700 | C13—H13A | 0.9600 |
| C4—H4B | 0.9700 | C13—H13B | 0.9600 |
| C5—C6 | 1.520 (2) | C13—H13C | 0.9600 |
| O2—S—C7 | 106.65 (7) | C5—C6—C1 | 111.56 (13) |
| O2—S—C1 | 105.67 (7) | C5—C6—H6A | 109.3 |
| C7—S—C1 | 99.48 (6) | C1—C6—H6A | 109.3 |
| C10—O3—C13 | 117.62 (16) | C5—C6—H6B | 109.3 |
| C6—C1—C2 | 113.39 (13) | C1—C6—H6B | 109.3 |
| C6—C1—S | 113.37 (10) | H6A—C6—H6B | 108.0 |
| C2—C1—S | 107.00 (10) | C12—C7—C8 | 119.70 (15) |
| C6—C1—H1 | 107.6 | C12—C7—S | 120.69 (12) |
| C2—C1—H1 | 107.6 | C8—C7—S | 119.45 (12) |
| S—C1—H1 | 107.6 | C9—C8—C7 | 119.90 (15) |
| O1—C2—C3 | 122.17 (16) | C9—C8—H8 | 120.0 |
| O1—C2—C1 | 121.24 (15) | C7—C8—H8 | 120.0 |
| C3—C2—C1 | 116.53 (14) | C8—C9—C10 | 120.38 (16) |
| C2—C3—C4 | 113.65 (16) | C8—C9—H9 | 119.8 |
| C2—C3—H3A | 108.8 | C10—C9—H9 | 119.8 |
| C4—C3—H3A | 108.8 | O3—C10—C11 | 124.06 (16) |
| C2—C3—H3B | 108.8 | O3—C10—C9 | 115.92 (16) |
| C4—C3—H3B | 108.8 | C11—C10—C9 | 120.02 (16) |
| H3A—C3—H3B | 107.7 | C12—C11—C10 | 119.29 (15) |
| C5—C4—C3 | 110.49 (15) | C12—C11—H11 | 120.4 |
| C5—C4—H4A | 109.6 | C10—C11—H11 | 120.4 |
| C3—C4—H4A | 109.6 | C11—C12—C7 | 120.69 (15) |
| C5—C4—H4B | 109.6 | C11—C12—H12 | 119.7 |
| C3—C4—H4B | 109.6 | C7—C12—H12 | 119.7 |
| H4A—C4—H4B | 108.1 | O3—C13—H13A | 109.5 |
| C4—C5—C6 | 110.84 (14) | O3—C13—H13B | 109.5 |
| C4—C5—H5A | 109.5 | H13A—C13—H13B | 109.5 |
| C6—C5—H5A | 109.5 | O3—C13—H13C | 109.5 |
| C4—C5—H5B | 109.5 | H13A—C13—H13C | 109.5 |
| C6—C5—H5B | 109.5 | H13B—C13—H13C | 109.5 |
| H5A—C5—H5B | 108.1 | ||
| O2—S—C1—C6 | −48.31 (13) | C1—S—C7—C12 | −86.59 (13) |
| C7—S—C1—C6 | 62.09 (13) | O2—S—C7—C8 | −152.43 (12) |
| O2—S—C1—C2 | 77.46 (11) | C1—S—C7—C8 | 97.95 (13) |
| C7—S—C1—C2 | −172.14 (10) | C12—C7—C8—C9 | 0.9 (2) |
| C6—C1—C2—O1 | 143.42 (18) | S—C7—C8—C9 | 176.38 (12) |
| S—C1—C2—O1 | 17.7 (2) | C7—C8—C9—C10 | 0.1 (2) |
| C6—C1—C2—C3 | −39.3 (2) | C13—O3—C10—C11 | 4.9 (2) |
| S—C1—C2—C3 | −165.05 (14) | C13—O3—C10—C9 | −175.42 (17) |
| O1—C2—C3—C4 | −140.82 (19) | C8—C9—C10—O3 | 179.84 (15) |
| C1—C2—C3—C4 | 41.9 (2) | C8—C9—C10—C11 | −0.5 (2) |
| C2—C3—C4—C5 | −51.8 (2) | O3—C10—C11—C12 | 179.51 (15) |
| C3—C4—C5—C6 | 60.5 (2) | C9—C10—C11—C12 | −0.1 (2) |
| C4—C5—C6—C1 | −58.4 (2) | C10—C11—C12—C7 | 1.1 (2) |
| C2—C1—C6—C5 | 46.78 (19) | C8—C7—C12—C11 | −1.5 (2) |
| S—C1—C6—C5 | 169.06 (12) | S—C7—C12—C11 | −176.95 (11) |
| O2—S—C7—C12 | 23.03 (14) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C1—H1···O2i | 0.98 | 2.47 | 3.257 (2) | 137 |
| C3—H3A···O2i | 0.97 | 2.59 | 3.323 (2) | 133 |
| C11—H11···O1ii | 0.93 | 2.59 | 3.500 (2) | 167 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2419).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013695/tk2419sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013695/tk2419Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

