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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Apr 30;65(Pt 5):o1181. doi: 10.1107/S1600536809015323

2-[3-Acetyl-5-(2-chloro-3-pyrid­yl)-2-methyl-2,3-dihydro-1,3,4-oxadiazol-2-yl]-4-fluoro­phenyl acetate

Quan Qin a, Li Juan Xu a, Li Fang Pan a, Shui Qing Chen a, Qing Bao Song a,*
PMCID: PMC2977845  PMID: 21583982

Abstract

In the title compound, C18H15ClFN3O4, the dihedral angle between the substituted pyridine ring and the oxadiazo­line ring is 9.73 (19)° and the acyl group is coplanar with the oxadiazo­line ring [O—C—N—C torsion angle = −2.1 (3)°]. Furthermore, the substituted benzene ring is almost orthogonal with the oxadiazo­line ring, the dihedral angle between them being 87.56 (18)°.

Related literature

For background to 1,3,4-oxadiazo­line derivatives and related structures, see: Song et al. (2006a ,b ); Pan et al. (2007). For the pharmacological properties of 2,5-disubstituted 1,3,4-oxa­diazo­lines, see: Chimirri et al. (1994, 1996); Dogan et al. (1998).graphic file with name e-65-o1181-scheme1.jpg

Experimental

Crystal data

  • C18H15ClFN3O4

  • M r = 391.78

  • Monoclinic, Inline graphic

  • a = 10.120 (2) Å

  • b = 13.900 (3) Å

  • c = 13.320 (3) Å

  • β = 102.14 (3)°

  • V = 1831.8 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 293 K

  • 0.12 × 0.10 × 0.08 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.971, T max = 0.981

  • 9882 measured reflections

  • 3403 independent reflections

  • 2394 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.043

  • wR(F 2) = 0.121

  • S = 1.00

  • 3403 reflections

  • 248 parameters

  • H-atom parameters not refined

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015323/tk2411sup1.cif

e-65-o1181-sup1.cif (20.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015323/tk2411Isup2.hkl

e-65-o1181-Isup2.hkl (166.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

This work was supported by the Key Discipline of Applied Chemistry, Zhejiang Province and the State Key Laboratory Breeding Base of Green Chemistry–Synthesis Technology, Zhejiang University of Technology (People’s Republic of China).

supplementary crystallographic information

Comment

In continuation of our study of 1,3,4-oxadiazoline derivatives (Song et al., 2006a,b; Pan et al., 2007), which possess a wide range of pharmaceutical activities (Chimirri et al., 1994, 1996; Dogan et al., 1998), a series of new 1,3,4-oxadiazoline derivatives have been prepared. We present herein the crystal structure of the title compound, (I).

In (I), Fig. 1, the molecule is twisted about the C8—C9 bond. Within the five-membered oxadiazoline ring, there is a formal C13===N1 double bond (1.282 (3) Å). The bond distance of C13—O4 (1.360 (2) Å) is considerably shorter than the of C9—O4 bond (1.452 (2) Å), suggesting some delocalization of π-electron density over the O4—C13—N1 chromophore.

Experimental

A solution of 2-chloro-N'-(1-(5-fluoro-2-hydroxyphenyl)ethylidene) nicotinohydrazide (0.5 g, 1.62 mmol) in acetic anhydride (10 ml) was refluxed until the reaction was finished. The acetic anhydride was distilled under vacuum. The residue was recrystallized from ethanol (10 ml). Colorless crystals (0.46 g) were obtained by slow evaporation of an ethanol solution of (I) after 2 days at room temperature.

Refinement

All H atoms were placed in calculated positions and allowed to ride on their parent atoms, with C—H = 0.93–0.96 Å and refined in the riding model approximation with Uiso(H) = 1.2—1.5Ueq(C).

Figures

Fig. 1.

Fig. 1.

View of (I) showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 40% probability level. H atoms are represented by circles of arbitrary size.

Crystal data

C18H15ClFN3O4 F(000) = 808
Mr = 391.78 Dx = 1.421 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 3403 reflections
a = 10.120 (2) Å θ = 2.1–25.5°
b = 13.900 (3) Å µ = 0.25 mm1
c = 13.320 (3) Å T = 293 K
β = 102.14 (3)° Block, colorless
V = 1831.8 (6) Å3 0.12 × 0.10 × 0.08 mm
Z = 4

Data collection

Bruker APEXII CCD area-detector diffractometer 3403 independent reflections
Radiation source: fine-focus sealed tube 2394 reflections with I > 2σ(I)
graphite Rint = 0.026
φ and ω scans θmax = 25.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −12→7
Tmin = 0.971, Tmax = 0.981 k = −16→16
9882 measured reflections l = −16→16

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121 H-atom parameters not refined
S = 1.00 w = 1/[σ2(Fo2) + (0.06P)2 + 0.3383P] where P = (Fo2 + 2Fc2)/3
3403 reflections (Δ/σ)max < 0.001
248 parameters Δρmax = 0.22 e Å3
0 restraints Δρmin = −0.22 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.0490 (3) 0.1369 (2) 0.5790 (2) 0.0842 (8)
H1A −0.0049 0.1943 0.5694 0.126*
H1B 0.0010 0.0859 0.5383 0.126*
H1C 0.1328 0.1485 0.5580 0.126*
C2 0.0772 (2) 0.10902 (17) 0.6890 (2) 0.0686 (6)
C3 0.1358 (2) −0.02657 (15) 0.79837 (16) 0.0566 (5)
C4 0.0293 (3) −0.04387 (16) 0.8454 (2) 0.0702 (7)
H4 −0.0576 −0.0247 0.8140 0.084*
C5 0.0520 (3) −0.08956 (18) 0.9390 (2) 0.0778 (7)
H5 −0.0187 −0.1021 0.9718 0.093*
C6 0.1815 (3) −0.11600 (17) 0.98264 (17) 0.0729 (7)
C7 0.2892 (3) −0.09887 (15) 0.93740 (16) 0.0627 (6)
H7 0.3758 −0.1177 0.9699 0.075*
C8 0.2675 (2) −0.05317 (14) 0.84270 (15) 0.0523 (5)
C9 0.3835 (2) −0.03837 (14) 0.78801 (14) 0.0517 (5)
C10 0.5212 (2) −0.07353 (16) 0.84381 (18) 0.0655 (6)
H10A 0.5183 −0.1419 0.8534 0.098*
H10B 0.5454 −0.0425 0.9095 0.098*
H10C 0.5872 −0.0585 0.8039 0.098*
C11 0.4183 (3) 0.23549 (16) 0.76258 (19) 0.0731 (7)
H11A 0.3303 0.2645 0.7478 0.110*
H11B 0.4494 0.2268 0.6999 0.110*
H11C 0.4801 0.2765 0.8080 0.110*
C12 0.4110 (2) 0.14036 (15) 0.81247 (16) 0.0551 (5)
C13 0.35464 (19) −0.02406 (16) 0.61505 (14) 0.0512 (5)
C14 0.3289 (2) −0.06543 (17) 0.51150 (15) 0.0561 (5)
C15 0.3246 (2) −0.16524 (19) 0.50291 (18) 0.0692 (6)
H15 0.3420 −0.2032 0.5617 0.083*
C16 0.2944 (2) −0.2080 (2) 0.4075 (2) 0.0806 (8)
H16 0.2913 −0.2746 0.4009 0.097*
C17 0.2691 (3) −0.1500 (3) 0.3232 (2) 0.0896 (9)
H17 0.2472 −0.1791 0.2590 0.107*
C18 0.3038 (2) −0.0137 (2) 0.41987 (16) 0.0655 (6)
Cl1 0.30866 (7) 0.11042 (5) 0.41760 (5) 0.0845 (3)
F1 0.2064 (2) −0.16130 (13) 1.07494 (10) 0.1092 (6)
N1 0.37927 (17) 0.06330 (13) 0.64394 (12) 0.0543 (4)
N2 0.39054 (17) 0.06139 (12) 0.75037 (12) 0.0525 (4)
N3 0.2739 (2) −0.0537 (2) 0.32705 (14) 0.0793 (6)
O1 0.10784 (15) 0.01308 (10) 0.69914 (11) 0.0612 (4)
O2 0.42063 (17) 0.13026 (11) 0.90474 (11) 0.0697 (5)
O3 0.0761 (2) 0.15939 (13) 0.76138 (16) 0.0960 (6)
O4 0.34983 (15) −0.08897 (10) 0.69061 (10) 0.0569 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0707 (17) 0.0814 (18) 0.097 (2) 0.0185 (13) 0.0106 (14) 0.0250 (15)
C2 0.0516 (13) 0.0587 (15) 0.0921 (19) 0.0046 (11) 0.0072 (12) −0.0006 (14)
C3 0.0683 (15) 0.0453 (11) 0.0562 (12) −0.0010 (10) 0.0132 (11) −0.0100 (9)
C4 0.0750 (16) 0.0595 (15) 0.0802 (17) −0.0053 (12) 0.0258 (13) −0.0181 (12)
C5 0.098 (2) 0.0677 (16) 0.0785 (18) −0.0171 (15) 0.0424 (16) −0.0228 (14)
C6 0.116 (2) 0.0610 (15) 0.0452 (13) −0.0158 (14) 0.0260 (14) −0.0094 (10)
C7 0.0875 (17) 0.0523 (13) 0.0470 (12) −0.0097 (11) 0.0112 (12) −0.0046 (10)
C8 0.0686 (14) 0.0409 (11) 0.0462 (11) −0.0038 (9) 0.0097 (10) −0.0070 (8)
C9 0.0636 (13) 0.0448 (11) 0.0434 (11) 0.0005 (9) 0.0036 (9) 0.0021 (8)
C10 0.0662 (14) 0.0631 (14) 0.0630 (14) 0.0084 (11) 0.0038 (11) 0.0152 (11)
C11 0.0900 (18) 0.0493 (13) 0.0749 (16) −0.0044 (12) 0.0058 (13) 0.0103 (11)
C12 0.0573 (13) 0.0493 (12) 0.0531 (13) 0.0000 (9) −0.0012 (10) 0.0032 (9)
C13 0.0449 (11) 0.0609 (13) 0.0457 (11) 0.0075 (10) 0.0048 (9) 0.0037 (10)
C14 0.0425 (11) 0.0771 (15) 0.0474 (12) 0.0085 (10) 0.0065 (9) −0.0007 (10)
C15 0.0611 (14) 0.0862 (18) 0.0574 (14) 0.0141 (12) 0.0058 (11) −0.0118 (12)
C16 0.0746 (17) 0.095 (2) 0.0675 (17) 0.0166 (14) 0.0046 (13) −0.0188 (14)
C17 0.0727 (18) 0.132 (3) 0.0597 (17) 0.0181 (18) 0.0046 (13) −0.0288 (17)
C18 0.0463 (12) 0.0983 (18) 0.0509 (13) 0.0108 (11) 0.0077 (10) 0.0046 (12)
Cl1 0.0910 (5) 0.0999 (5) 0.0607 (4) 0.0095 (4) 0.0117 (3) 0.0222 (3)
F1 0.1671 (18) 0.1102 (13) 0.0567 (9) −0.0254 (11) 0.0381 (10) 0.0077 (8)
N1 0.0541 (10) 0.0628 (12) 0.0431 (9) 0.0031 (8) 0.0033 (8) 0.0088 (8)
N2 0.0628 (11) 0.0474 (10) 0.0429 (9) 0.0000 (8) 0.0011 (8) 0.0065 (7)
N3 0.0658 (13) 0.123 (2) 0.0473 (12) 0.0129 (13) 0.0071 (9) −0.0021 (11)
O1 0.0643 (9) 0.0546 (9) 0.0614 (9) 0.0060 (7) 0.0060 (7) −0.0009 (7)
O2 0.0934 (12) 0.0583 (9) 0.0497 (9) −0.0047 (8) −0.0023 (8) 0.0010 (7)
O3 0.1075 (15) 0.0635 (11) 0.1116 (16) 0.0128 (10) 0.0107 (12) −0.0142 (11)
O4 0.0735 (10) 0.0501 (8) 0.0461 (8) 0.0030 (7) 0.0102 (7) −0.0016 (6)

Geometric parameters (Å, °)

C1—C2 1.484 (4) C10—H10B 0.9600
C1—H1A 0.9600 C10—H10C 0.9600
C1—H1B 0.9600 C11—C12 1.489 (3)
C1—H1C 0.9600 C11—H11A 0.9600
C2—O3 1.194 (3) C11—H11B 0.9600
C2—O1 1.369 (3) C11—H11C 0.9600
C3—C4 1.377 (3) C12—O2 1.220 (2)
C3—C8 1.390 (3) C12—N2 1.364 (3)
C3—O1 1.405 (2) C13—N1 1.282 (3)
C4—C5 1.375 (3) C13—O4 1.360 (2)
C4—H4 0.9300 C13—C14 1.466 (3)
C5—C6 1.367 (4) C14—C15 1.392 (3)
C5—H5 0.9300 C14—C18 1.393 (3)
C6—F1 1.357 (3) C15—C16 1.377 (3)
C6—C7 1.373 (3) C15—H15 0.9300
C7—C8 1.388 (3) C16—C17 1.362 (4)
C7—H7 0.9300 C16—H16 0.9300
C8—C9 1.520 (3) C17—N3 1.340 (4)
C9—O4 1.452 (2) C17—H17 0.9300
C9—N2 1.481 (2) C18—N3 1.331 (3)
C9—C10 1.516 (3) C18—Cl1 1.727 (3)
C10—H10A 0.9600 N1—N2 1.398 (2)
C2—C1—H1A 109.5 H10A—C10—H10C 109.5
C2—C1—H1B 109.5 H10B—C10—H10C 109.5
H1A—C1—H1B 109.5 C12—C11—H11A 109.5
C2—C1—H1C 109.5 C12—C11—H11B 109.5
H1A—C1—H1C 109.5 H11A—C11—H11B 109.5
H1B—C1—H1C 109.5 C12—C11—H11C 109.5
O3—C2—O1 122.1 (2) H11A—C11—H11C 109.5
O3—C2—C1 127.7 (2) H11B—C11—H11C 109.5
O1—C2—C1 110.2 (2) O2—C12—N2 119.22 (19)
C4—C3—C8 122.2 (2) O2—C12—C11 123.4 (2)
C4—C3—O1 118.3 (2) N2—C12—C11 117.36 (19)
C8—C3—O1 119.31 (19) N1—C13—O4 116.17 (17)
C5—C4—C3 119.7 (3) N1—C13—C14 129.68 (19)
C5—C4—H4 120.1 O4—C13—C14 114.15 (18)
C3—C4—H4 120.1 C15—C14—C18 116.4 (2)
C6—C5—C4 118.2 (2) C15—C14—C13 117.68 (19)
C6—C5—H5 120.9 C18—C14—C13 125.8 (2)
C4—C5—H5 120.9 C16—C15—C14 120.2 (2)
F1—C6—C5 119.3 (3) C16—C15—H15 119.9
F1—C6—C7 117.7 (3) C14—C15—H15 119.9
C5—C6—C7 123.0 (2) C17—C16—C15 118.2 (3)
C6—C7—C8 119.4 (2) C17—C16—H16 120.9
C6—C7—H7 120.3 C15—C16—H16 120.9
C8—C7—H7 120.3 N3—C17—C16 124.1 (2)
C7—C8—C3 117.5 (2) N3—C17—H17 118.0
C7—C8—C9 120.5 (2) C16—C17—H17 118.0
C3—C8—C9 121.92 (18) N3—C18—C14 124.3 (3)
O4—C9—N2 99.78 (14) N3—C18—Cl1 113.72 (19)
O4—C9—C10 107.50 (17) C14—C18—Cl1 122.02 (18)
N2—C9—C10 111.29 (17) C13—N1—N2 104.80 (16)
O4—C9—C8 107.64 (16) C12—N2—N1 124.70 (17)
N2—C9—C8 112.70 (16) C12—N2—C9 124.06 (16)
C10—C9—C8 116.38 (17) N1—N2—C9 111.19 (15)
C9—C10—H10A 109.5 C18—N3—C17 116.8 (2)
C9—C10—H10B 109.5 C2—O1—C3 118.16 (18)
H10A—C10—H10B 109.5 C13—O4—C9 107.56 (15)
C9—C10—H10C 109.5
C8—C3—C4—C5 −0.5 (3) C15—C14—C18—Cl1 −178.79 (16)
O1—C3—C4—C5 174.88 (19) C13—C14—C18—Cl1 3.5 (3)
C3—C4—C5—C6 0.3 (3) O4—C13—N1—N2 −1.3 (2)
C4—C5—C6—F1 −179.9 (2) C14—C13—N1—N2 177.94 (19)
C4—C5—C6—C7 0.1 (4) O2—C12—N2—N1 −179.27 (18)
F1—C6—C7—C8 179.65 (18) C11—C12—N2—N1 1.6 (3)
C5—C6—C7—C8 −0.4 (3) O2—C12—N2—C9 −2.1 (3)
C6—C7—C8—C3 0.2 (3) C11—C12—N2—C9 178.74 (19)
C6—C7—C8—C9 −176.51 (19) C13—N1—N2—C12 −177.06 (19)
C4—C3—C8—C7 0.2 (3) C13—N1—N2—C9 5.5 (2)
O1—C3—C8—C7 −175.12 (17) O4—C9—N2—C12 175.46 (18)
C4—C3—C8—C9 176.90 (19) C10—C9—N2—C12 −71.3 (3)
O1—C3—C8—C9 1.5 (3) C8—C9—N2—C12 61.5 (2)
C7—C8—C9—O4 119.08 (18) O4—C9—N2—N1 −7.0 (2)
C3—C8—C9—O4 −57.5 (2) C10—C9—N2—N1 106.21 (19)
C7—C8—C9—N2 −131.88 (18) C8—C9—N2—N1 −120.95 (17)
C3—C8—C9—N2 51.6 (2) C14—C18—N3—C17 −0.5 (3)
C7—C8—C9—C10 −1.6 (3) Cl1—C18—N3—C17 179.67 (18)
C3—C8—C9—C10 −178.13 (18) C16—C17—N3—C18 −0.8 (4)
N1—C13—C14—C15 170.8 (2) O3—C2—O1—C3 1.4 (3)
O4—C13—C14—C15 −10.0 (3) C1—C2—O1—C3 −179.18 (19)
N1—C13—C14—C18 −11.5 (3) C4—C3—O1—C2 75.7 (2)
O4—C13—C14—C18 167.70 (19) C8—C3—O1—C2 −108.7 (2)
C18—C14—C15—C16 −1.0 (3) N1—C13—O4—C9 −3.4 (2)
C13—C14—C15—C16 176.9 (2) C14—C13—O4—C9 177.29 (16)
C14—C15—C16—C17 −0.1 (4) N2—C9—O4—C13 5.97 (19)
C15—C16—C17—N3 1.1 (4) C10—C9—O4—C13 −110.18 (18)
C15—C14—C18—N3 1.4 (3) C8—C9—O4—C13 123.72 (16)
C13—C14—C18—N3 −176.3 (2)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2411).

References

  1. Bruker (2000). APEX2, SAINT and SADABS Bruker AXS inc., Madison, Wisconsin, USA.
  2. Chimirri, A., Grasso, S., Monforte, A. M., Monforte, P., Zappala, M. & Carotti, A. (1994). Farmaco, 49, 509–511. [PubMed]
  3. Chimirri, A., Grasso, S., Montforte, A. M., Rao, A. & Zappala, M. (1996). Farmaco, 51, 125–129. [PubMed]
  4. Dogan, H. N., Duran, A., Rollas, S., Sener, G., Armutak, Y. & Keyer-Uysal, M. (1998). Med. Sci. Res., 26, 755–758.
  5. Pan, L.-F., Lu, Y.-Q., Qin, Q., Qi, C.-Z. & Song, Q.-B. (2007). Acta Cryst. E63, o3988.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Song, Q.-B., Zhang, J., Dong, Y. & Tiekink, E. R. T. (2006a). Acta Cryst. E62, o4388–o4390.
  8. Song, Q.-B., Zhang, J. & Tiekink, E. R. T. (2006b). Acta Cryst. E62, o4115–o4117.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015323/tk2411sup1.cif

e-65-o1181-sup1.cif (20.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015323/tk2411Isup2.hkl

e-65-o1181-Isup2.hkl (166.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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