Abstract
In the crystal structure of the title compound, C9H8BrNO3S, the thiazine ring is in the twisted form. In the crystal, pairs of intermolecular C—H⋯O hydrogen bonds form inversion dimers with an R 2 2(8) ring motif. Weak intermolecular C—H⋯Br and C—H⋯π interactions are also present.
Related literature
For the structures of benzothiazine derivatives, see: Arshad et al. (2008 ▶); Shafiq et al. (2008a
▶,b
▶); Tahir et al. (2008 ▶). For the related structure, 6-bromo-1-methyl-1H-benzo[c][1,2]thiazin-4(3H)-one 2,2-dioxide, see: Shafiq et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For the synthesis, see: Lombardino (1972 ▶).
Experimental
Crystal data
C9H8BrNO3S
M r = 290.13
Monoclinic,
a = 5.4577 (3) Å
b = 12.6400 (8) Å
c = 15.1258 (10) Å
β = 96.204 (2)°
V = 1037.35 (11) Å3
Z = 4
Mo Kα radiation
μ = 4.15 mm−1
T = 296 K
0.20 × 0.17 × 0.15 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.439, T max = 0.540
11077 measured reflections
2234 independent reflections
1709 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.030
wR(F 2) = 0.072
S = 1.04
2234 reflections
137 parameters
H-atom parameters constrained
Δρmax = 0.41 e Å−3
Δρmin = −0.35 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809015980/fb2142sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015980/fb2142Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C3—H3⋯O3i | 0.93 | 2.54 | 3.308 (4) | 140 |
C8—H8A⋯O2ii | 0.97 | 2.54 | 3.470 (3) | 162 |
C9—H9B⋯O3 | 0.96 | 2.41 | 2.824 (3) | 106 |
C5—H5⋯Br1iii | 0.93 | 2.94 | 3.871 (3) | 175 |
C9—H9A⋯Br1iv | 0.96 | 3.01 | 3.871 (2) | 150 |
C9—H9C⋯Cg1v | 0.96 | 2.83 | 3.449 (3) | 123 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
; (v)
. Cg1 is the centroid of the C1–C6 ring.
Acknowledgments
MS gratefully acknowledges the Higher Education Commission, Islamabad, Pakistan, for providing a Scholarship under the Indigenous PhD Program (PIN 042–120567-PS2–276).
supplementary crystallographic information
Comment
We have reported crystal structures of the synthesized derivatives of the benzothiazine molecule (Shafiq et al., 2008a; Shafiq et al., 2008b; Tahir et al., 2008; Arshad et al., 2008). Here we report the title compound (I), (Fig. 1), that belongs to this series of the structures.
(I) is closely related to the crystal structure of 6-bromo-1-methyl-1H-benzo[c][1,2]thiazin-4(3H)-one 2,2-dioxide, (II), (Shafiq et al., 2009). (I) and (II) differ by the presence of the methyl and ethyl groups at the N-atom, respectively. The bromo-substituted benzene ring A (C1—C6) is planar with Br deviated by 0.064 (4) Å from the mean plane. The thiazine ring B (S1/N1/C1/C6—C8) is in the twisted form, with the maximum puckering amplitude QT = 0.577 (2) Å (Cremer & Pople, 1975). The title molecules form dimers interconnected by a pair of the intermolecular H-bonds C8–H8A···O2i [symmetry code: i = -x + 1, -y, -z + 1] with the R22(8) ring motif (Bernstein et al., 1995), (Tab. 1, Fig. 2). The dimers are linked to each other forming helices through the other intermolecular H-bonding C3–H3···O3ii [symmetry code: ii = -x + 3/2, y + 1/2, -z + 1/2]. The molecules are also stabilized due to C—H···π-electron interaction with the benzene group and intermolecular C—H···Br interactions (Tab. 1).
Experimental
The title compound was prepared in a three step scheme following the reported procedure (Lombardino, 1972). In the first step, methyl-2-amino-5-bromobenzoate (92 mg, 4 mmol) was put in dichloromethane (10 ml) and this mixture was introduced into a round bottom flask. A solution of methanesulfonyl chloride (550 mg, 4.8 mmol) in dichloromethane (10 ml) was slowly added (10-15 minutes) to this mixture. The mixture was stirred at 60–70 °C for 2–3 days keeping pH of the mixture alkaline by triethylamine. After the completion of the reaction, the solvent was evaporated under reduced pressure to get methyl-5-bromo-2-[(methylsulfonyl)amino] benzoate.
In the second step, methyl-5-bromo-2-[(methylsulfonyl)amino] benzoate (1.02 g, 3.3 mmol) was introduced into 5 ml of N,N-dimethylformamide (DMF). The mixture was added to a suspension of NaH (158.38 mg, 6.6 mmol) in DMF (10 ml). The mixture was stirred at room temperature for 14–16 h. After that, methyl-5-bromo-2-[methyl(methylsulfonyl)amino]benzoate was obtained.
In the third step methyl-5-bromo-2-[methyl(methylsulfonyl)amino]benzoate was cyclized. Therefore methyl-5-bromo-2-[methyl(methylsulfonyl)amino]benzoate (418.83 mg, 1.3 mmol) was introduced in DMF (5 ml) and added to the suspension of NaH (59.99 mg, 2.5 mmol) in DMF (10 ml). The mixture was stirred at room temperature for 3–4 h. Then the reaction mixture was poured into ice and clear solution was obtained. The pH of this solution was adjusted between 5–6. The precipitated crude product was recrystallized from ethanol. Yellow needle-shaped crystals of the title compound of suitable size for structure analysis were grown in this way.
Refinement
Though all the hydrogens were discernible in the difference electron density map, the H-atoms were situated into idealized positions, with C-H = 0.93, 0.96 and 0.97 Å for aryl, methyl and methylene H, resepctively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C), where x = 1.5 for methyl and 1.2 for other carrier atoms.
Figures
Fig. 1.
The title compound, with the atom-numbering scheme. The displacement ellipsoids are drawn at the 50% probability level. The H-atoms are shown by small circles of arbitrary radius. The dotted lines show the intramolecular H-bonds.
Fig. 2.
A section of the title structure showing the dimers bind by the hydrogen bonds.
Crystal data
C9H8BrNO3S | F(000) = 576 |
Mr = 290.13 | Dx = 1.858 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2234 reflections |
a = 5.4577 (3) Å | θ = 2.1–27.0° |
b = 12.6400 (8) Å | µ = 4.15 mm−1 |
c = 15.1258 (10) Å | T = 296 K |
β = 96.204 (2)° | Prism, yellow |
V = 1037.35 (11) Å3 | 0.20 × 0.17 × 0.15 mm |
Z = 4 |
Data collection
Bruker Kappa APEXII CCD diffractometer | 2234 independent reflections |
Radiation source: fine-focus sealed tube | 1709 reflections with I > 2σ(I) |
graphite | Rint = 0.032 |
Detector resolution: 7.40 pixels mm-1 | θmax = 27.0°, θmin = 2.1° |
ω scans | h = −6→6 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −16→16 |
Tmin = 0.439, Tmax = 0.540 | l = −18→19 |
11077 measured reflections |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.072 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0309P)2 + 0.4349P] where P = (Fo2 + 2Fc2)/3 |
2234 reflections | (Δ/σ)max = 0.001 |
137 parameters | Δρmax = 0.41 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
31 constraints |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Br1 | 0.06150 (6) | 0.57510 (2) | 0.36727 (2) | 0.05871 (14) | |
S1 | 0.74473 (12) | 0.10243 (5) | 0.40740 (4) | 0.03706 (17) | |
O1 | 0.3779 (4) | 0.23972 (17) | 0.56688 (14) | 0.0606 (6) | |
O2 | 0.5116 (4) | 0.05733 (15) | 0.37692 (14) | 0.0529 (5) | |
O3 | 0.9592 (4) | 0.03989 (16) | 0.40469 (14) | 0.0555 (6) | |
N1 | 0.7895 (4) | 0.21290 (17) | 0.35343 (14) | 0.0385 (5) | |
C1 | 0.6129 (4) | 0.29366 (19) | 0.35581 (16) | 0.0326 (6) | |
C2 | 0.5631 (5) | 0.3622 (2) | 0.28382 (19) | 0.0403 (6) | |
H2 | 0.6430 | 0.3525 | 0.2332 | 0.048* | |
C3 | 0.3980 (5) | 0.4437 (2) | 0.2866 (2) | 0.0430 (7) | |
H3 | 0.3650 | 0.4882 | 0.2378 | 0.052* | |
C4 | 0.2814 (5) | 0.4595 (2) | 0.36193 (19) | 0.0409 (6) | |
C5 | 0.3200 (5) | 0.3919 (2) | 0.43312 (19) | 0.0416 (6) | |
H5 | 0.2368 | 0.4024 | 0.4829 | 0.050* | |
C6 | 0.4846 (4) | 0.3073 (2) | 0.43087 (17) | 0.0362 (6) | |
C7 | 0.5129 (5) | 0.2357 (2) | 0.50864 (18) | 0.0407 (6) | |
C8 | 0.7204 (5) | 0.1553 (2) | 0.51326 (17) | 0.0419 (6) | |
H8A | 0.6884 | 0.0989 | 0.5540 | 0.050* | |
H8B | 0.8745 | 0.1891 | 0.5355 | 0.050* | |
C9 | 0.9601 (4) | 0.2116 (2) | 0.28524 (19) | 0.0415 (6) | |
H9A | 0.8798 | 0.1812 | 0.2316 | 0.062* | |
H9B | 1.1024 | 0.1701 | 0.3057 | 0.062* | |
H9C | 1.0102 | 0.2826 | 0.2737 | 0.062* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0680 (2) | 0.0468 (2) | 0.0609 (2) | 0.02306 (14) | 0.00505 (16) | 0.00177 (15) |
S1 | 0.0439 (3) | 0.0358 (4) | 0.0327 (4) | 0.0072 (3) | 0.0098 (3) | 0.0042 (3) |
O1 | 0.0815 (14) | 0.0670 (14) | 0.0380 (12) | 0.0261 (11) | 0.0282 (11) | 0.0127 (11) |
O2 | 0.0603 (12) | 0.0441 (12) | 0.0541 (14) | −0.0125 (9) | 0.0050 (10) | 0.0006 (10) |
O3 | 0.0652 (12) | 0.0557 (13) | 0.0489 (13) | 0.0284 (10) | 0.0214 (10) | 0.0133 (10) |
N1 | 0.0420 (11) | 0.0415 (13) | 0.0350 (13) | 0.0070 (9) | 0.0179 (10) | 0.0092 (10) |
C1 | 0.0345 (12) | 0.0319 (14) | 0.0317 (15) | −0.0013 (10) | 0.0052 (10) | 0.0010 (11) |
C2 | 0.0446 (14) | 0.0398 (15) | 0.0382 (17) | 0.0001 (11) | 0.0127 (12) | 0.0070 (12) |
C3 | 0.0523 (15) | 0.0346 (15) | 0.0423 (17) | −0.0010 (12) | 0.0061 (13) | 0.0102 (12) |
C4 | 0.0426 (13) | 0.0343 (14) | 0.0453 (18) | 0.0060 (11) | 0.0026 (12) | −0.0001 (13) |
C5 | 0.0483 (15) | 0.0431 (15) | 0.0347 (16) | 0.0084 (12) | 0.0104 (12) | −0.0017 (13) |
C6 | 0.0415 (13) | 0.0386 (15) | 0.0288 (15) | 0.0030 (11) | 0.0051 (11) | 0.0017 (11) |
C7 | 0.0502 (14) | 0.0431 (16) | 0.0296 (15) | 0.0072 (12) | 0.0080 (12) | 0.0006 (12) |
C8 | 0.0523 (15) | 0.0464 (17) | 0.0274 (15) | 0.0104 (12) | 0.0058 (12) | 0.0057 (12) |
C9 | 0.0403 (13) | 0.0444 (16) | 0.0425 (17) | −0.0026 (11) | 0.0171 (12) | −0.0018 (13) |
Geometric parameters (Å, °)
Br1—C4 | 1.898 (3) | C3—C4 | 1.379 (4) |
S1—O3 | 1.4169 (19) | C3—H3 | 0.9300 |
S1—O2 | 1.424 (2) | C4—C5 | 1.372 (4) |
S1—N1 | 1.649 (2) | C5—C6 | 1.400 (3) |
S1—C8 | 1.753 (3) | C5—H5 | 0.9300 |
O1—C7 | 1.209 (3) | C6—C7 | 1.479 (4) |
N1—C1 | 1.407 (3) | C7—C8 | 1.518 (3) |
N1—C9 | 1.463 (3) | C8—H8A | 0.9700 |
C1—C2 | 1.395 (3) | C8—H8B | 0.9700 |
C1—C6 | 1.407 (3) | C9—H9A | 0.9600 |
C2—C3 | 1.373 (4) | C9—H9B | 0.9600 |
C2—H2 | 0.9300 | C9—H9C | 0.9600 |
O3—S1—O2 | 118.63 (13) | C4—C5—C6 | 120.1 (2) |
O3—S1—N1 | 106.93 (11) | C4—C5—H5 | 120.0 |
O2—S1—N1 | 110.70 (12) | C6—C5—H5 | 120.0 |
O3—S1—C8 | 112.54 (13) | C5—C6—C1 | 119.3 (2) |
O2—S1—C8 | 107.17 (13) | C5—C6—C7 | 117.4 (2) |
N1—S1—C8 | 99.15 (12) | C1—C6—C7 | 123.2 (2) |
C1—N1—C9 | 121.1 (2) | O1—C7—C6 | 122.3 (2) |
C1—N1—S1 | 117.60 (16) | O1—C7—C8 | 120.3 (2) |
C9—N1—S1 | 118.62 (17) | C6—C7—C8 | 117.4 (2) |
C2—C1—N1 | 120.5 (2) | C7—C8—S1 | 110.06 (18) |
C2—C1—C6 | 118.8 (2) | C7—C8—H8A | 109.6 |
N1—C1—C6 | 120.8 (2) | S1—C8—H8A | 109.6 |
C3—C2—C1 | 121.1 (2) | C7—C8—H8B | 109.6 |
C3—C2—H2 | 119.5 | S1—C8—H8B | 109.6 |
C1—C2—H2 | 119.5 | H8A—C8—H8B | 108.2 |
C2—C3—C4 | 119.8 (3) | N1—C9—H9A | 109.5 |
C2—C3—H3 | 120.1 | N1—C9—H9B | 109.5 |
C4—C3—H3 | 120.1 | H9A—C9—H9B | 109.5 |
C5—C4—C3 | 120.9 (2) | N1—C9—H9C | 109.5 |
C5—C4—Br1 | 119.3 (2) | H9A—C9—H9C | 109.5 |
C3—C4—Br1 | 119.8 (2) | H9B—C9—H9C | 109.5 |
O3—S1—N1—C1 | −172.74 (19) | Br1—C4—C5—C6 | −179.0 (2) |
O2—S1—N1—C1 | 56.7 (2) | C4—C5—C6—C1 | 1.2 (4) |
C8—S1—N1—C1 | −55.7 (2) | C4—C5—C6—C7 | −178.3 (2) |
O3—S1—N1—C9 | 25.6 (2) | C2—C1—C6—C5 | −3.1 (4) |
O2—S1—N1—C9 | −105.0 (2) | N1—C1—C6—C5 | 176.5 (2) |
C8—S1—N1—C9 | 142.7 (2) | C2—C1—C6—C7 | 176.5 (2) |
C9—N1—C1—C2 | 12.8 (4) | N1—C1—C6—C7 | −3.9 (4) |
S1—N1—C1—C2 | −148.4 (2) | C5—C6—C7—O1 | 9.9 (4) |
C9—N1—C1—C6 | −166.8 (2) | C1—C6—C7—O1 | −169.7 (3) |
S1—N1—C1—C6 | 32.0 (3) | C5—C6—C7—C8 | −170.1 (2) |
N1—C1—C2—C3 | −177.5 (2) | C1—C6—C7—C8 | 10.3 (4) |
C6—C1—C2—C3 | 2.0 (4) | O1—C7—C8—S1 | 139.9 (2) |
C1—C2—C3—C4 | 0.9 (4) | C6—C7—C8—S1 | −40.0 (3) |
C2—C3—C4—C5 | −2.8 (4) | O3—S1—C8—C7 | 170.50 (19) |
C2—C3—C4—Br1 | 177.9 (2) | O2—S1—C8—C7 | −57.3 (2) |
C3—C4—C5—C6 | 1.7 (4) | N1—S1—C8—C7 | 57.8 (2) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O3i | 0.93 | 2.54 | 3.308 (4) | 140 |
C8—H8A···O2ii | 0.97 | 2.54 | 3.470 (3) | 162 |
C9—H9B···O3 | 0.96 | 2.41 | 2.824 (3) | 106 |
C5—H5···Br1iii | 0.93 | 2.94 | 3.871 (3) | 175 |
C9—H9A···Br1iv | 0.96 | 3.01 | 3.871 (2) | 150 |
C9—H9C···Cg1v | 0.96 | 2.83 | 3.449 (3) | 123 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) −x, −y+1, −z+1; (iv) −x+1/2, y−1/2, −z+1/2; (v) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FB2142).
References
- Arshad, M. N., Tahir, M. N., Khan, I. U., Shafiq, M. & Siddiqui, W. A. (2008). Acta Cryst. E64, o2045. [DOI] [PMC free article] [PubMed]
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
- Lombardino, J. G. (1972). J. Heterocycl. Chem.9, 315–317.
- Shafiq, M., Khan, I. U., Tahir, M. N. & Siddiqui, W. A. (2008a). Acta Cryst. E64, o558. [DOI] [PMC free article] [PubMed]
- Shafiq, M., Tahir, M. N., Khan, I. U., Ahmad, S. & Siddiqui, W. A. (2008b). Acta Cryst. E64, o1270. [DOI] [PMC free article] [PubMed]
- Shafiq, M., Tahir, M. N., Khan, I. U., Arshad, M. N. & Safdar, M. (2009). Acta Cryst. E65, o393. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
- Tahir, M. N., Shafiq, M., Khan, I. U., Siddiqui, W. A. & Arshad, M. N. (2008). Acta Cryst. E64, o557. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809015980/fb2142sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015980/fb2142Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report