Abstract
The title compound, C16H12F3NO, a derivative of biologically active chalcones, comprises two benzene rings and a central –CH=CH—C(=O)– unit. The dihedral angle between the two rings is 10.9 (1)° and the molecule adopts an E configuration about the central olefinic bond. The crystal structure is stabilized by intermolecular N—H⋯O and N—H⋯N hydrogen bonds.
Related literature
For related structures, see: Narender et al. (2007 ▶); Kamal et al. (2008 ▶); Wu et al. (2009 ▶); Low et al. (2002 ▶); Yathirajan et al. (2006 ▶); Suwunwong et al. (2009 ▶). For background to and applications of chalcones, see: Heidari et al. (2009 ▶); Nielsen et al. (2005 ▶); Mojzis et al. (2008 ▶); Achanta et al. (2006 ▶); Dimmock et al. (1999 ▶); Liang et al. (2007a
▶,b
▶, 2009 ▶); Zhao et al. (2010 ▶).
Experimental
Crystal data
C16H12F3NO
M r = 291.27
Monoclinic,
a = 18.835 (3) Å
b = 4.7866 (8) Å
c = 15.177 (3) Å
β = 101.108 (3)°
V = 1342.7 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.12 mm−1
T = 273 K
0.43 × 0.28 × 0.22 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.951, T max = 0.974
6607 measured reflections
2360 independent reflections
1700 reflections with I > 2σ(I)
R int = 0.130
Refinement
R[F 2 > 2σ(F 2)] = 0.060
wR(F 2) = 0.185
S = 1.00
2360 reflections
191 parameters
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.25 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014169/zq2037sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014169/zq2037Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1A⋯N1i | 0.86 | 2.42 | 3.235 (3) | 158 |
N1—H1B⋯O1ii | 0.86 | 2.45 | 3.162 (3) | 140 |
Symmetry codes: (i) ; (ii)
.
Acknowledgments
This work was supported by the Zhejiang Province Extremely Key Subject Building Funding (Pharmacology and Biochemical Pharmaceutics 2008), the Department of Education of Zhejiang Province (No. 20070907) and the Wenzhou Administration of Science and Technology project (No. Y20080016).
supplementary crystallographic information
Comment
Chalcones, which are open-chain flavonoids, distribute widespread in fruits, vegetables and so on. Chalcone and their derivatives are obtained from the aldol condensation of aromatic aldehydes and aromatic ketones. They are important intermediate of organic synthesis. Due to their significant biological activities such as anti-inflammatory, antibacterial, antiangiogenic, antitumor and analgesic, they have attracted more and more attention (Heidari et al., 2009; Nielsen et al., 2005; Mojzis et al., 2008; Achanta et al., 2006; Dimmock et al., 1999). The molecule of chalcone possess two phenyl rings and one –CH=CH–C(=O)– central part. The carbonyl functional group which is responsible for the antibacterial activity of these compounds is the main feature of chalcone derivatives (Suwunwong et al., 2009).
Due to the broad spectrum of biological activities of this type of compounds, various chalcone analogues have been synthesized in order to filter the better ones or the unique ones (Narender et al., 2007; Kamal et al., 2008). As a continuation of our broad program of work on the synthesis and structural study of chalcones, the title chalcone derivative has been obtained and an X-ray diffraction study was carried out.
The molecule is approximately planar and the dihedral angle between the two phenyl rings is 10.9 (1)°. The H atoms of the central propenone group are trans to each other. The average value of the phenyl bond distances [1.385 (5) Å] and bond angles [120.7 (4)°] have normal values which agree quite well with the values reported in the literature for some analogous structures (Wu et al., 2009; Low et al., 2002; Yathirajan et al., 2006). The crystal structure is stabilized by intermolecular N(1)–H1A···O(1) and N(1)–H1B···N(1) hydrogen bonds.
Experimental
1-(4-aminophenyl)ethanone (5 mmol) was dissolved in ethanol (10 ml) and a solution of KOH (40%, 5 drops) was added. The flask was immersed in bath of crushed ice and a solution of 2-(trifluoromethyl)benzaldehyde (5 mmol) in ethanol (10 ml) was added. The reaction mixture was stirred at 300 K and completion of the reaction was monitored by thin-layer chromatography. Ice-cold water was added to the reaction mixture after 24 h and the yellow solid that separated was filtered off, washed with water and cold ethanol, dried and purified by column chromatography on silica gel (yield: 68%). Single crystals of the title compound were grown in a CH2Cl2/CH3OH mixture (7:3 v/v) by slow evaporation at 277 K.
Refinement
The H atoms were positioned geometrically (C—H = 0.93 and N—H = 0.86 Å) and refined as riding with Uiso(H) = 1.2Ueq(C,N).
Figures
Fig. 1.
The molecular structure of the title compound, showing 30% displacement ellipsoids for the non-hydrogen atoms. Hydrogen atoms are drawn as spheres of arbitrary radius.
Crystal data
C16H12F3NO | F(000) = 600 |
Mr = 291.27 | Dx = 1.441 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1903 reflections |
a = 18.835 (3) Å | θ = 2.7–25.4° |
b = 4.7866 (8) Å | µ = 0.12 mm−1 |
c = 15.177 (3) Å | T = 273 K |
β = 101.108 (3)° | Block, colorless |
V = 1342.7 (4) Å3 | 0.43 × 0.28 × 0.22 mm |
Z = 4 |
Data collection
Bruker APEXII CCD area-detector diffractometer | 2360 independent reflections |
Radiation source: fine-focus sealed tube | 1700 reflections with I > 2σ(I) |
graphite | Rint = 0.130 |
φ and ω scans | θmax = 25.0°, θmin = 1.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −21→22 |
Tmin = 0.951, Tmax = 0.974 | k = −5→5 |
6607 measured reflections | l = −18→10 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
wR(F2) = 0.185 | w = 1/[σ2(Fo2) + (0.1025P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.001 |
2360 reflections | Δρmax = 0.23 e Å−3 |
191 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.005 (3) |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
C1 | 0.34496 (14) | −0.3803 (5) | 0.79335 (18) | 0.0501 (6) | |
C2 | 0.36516 (11) | −0.4190 (5) | 0.70442 (16) | 0.0410 (6) | |
C3 | 0.42148 (13) | −0.6043 (6) | 0.69850 (19) | 0.0522 (7) | |
H3 | 0.4457 | −0.6952 | 0.7497 | 0.063* | |
C4 | 0.44121 (14) | −0.6525 (6) | 0.6172 (2) | 0.0604 (8) | |
H4 | 0.4786 | −0.7762 | 0.6135 | 0.073* | |
C5 | 0.40580 (14) | −0.5182 (6) | 0.5413 (2) | 0.0593 (8) | |
H5 | 0.4193 | −0.5502 | 0.4864 | 0.071* | |
C6 | 0.34998 (13) | −0.3352 (6) | 0.54698 (18) | 0.0529 (7) | |
H6 | 0.3263 | −0.2464 | 0.4950 | 0.063* | |
C7 | 0.32798 (12) | −0.2792 (5) | 0.62745 (16) | 0.0412 (6) | |
C8 | 0.26836 (13) | −0.0800 (5) | 0.62980 (17) | 0.0476 (6) | |
H8 | 0.2543 | −0.0556 | 0.6848 | 0.057* | |
C9 | 0.23372 (13) | 0.0641 (5) | 0.56274 (18) | 0.0486 (6) | |
H9 | 0.2468 | 0.0408 | 0.5072 | 0.058* | |
C10 | 0.17464 (12) | 0.2634 (5) | 0.56880 (16) | 0.0416 (6) | |
C11 | 0.14526 (11) | 0.4364 (4) | 0.48894 (16) | 0.0375 (6) | |
C12 | 0.17160 (12) | 0.4283 (5) | 0.40932 (17) | 0.0449 (6) | |
H12 | 0.2090 | 0.3057 | 0.4046 | 0.054* | |
C13 | 0.14390 (12) | 0.5965 (5) | 0.33733 (17) | 0.0469 (6) | |
H13 | 0.1628 | 0.5861 | 0.2852 | 0.056* | |
C14 | 0.08774 (11) | 0.7824 (5) | 0.34190 (16) | 0.0416 (6) | |
C15 | 0.05970 (12) | 0.7888 (5) | 0.42057 (18) | 0.0459 (6) | |
H15 | 0.0215 | 0.9084 | 0.4246 | 0.055* | |
C16 | 0.08779 (12) | 0.6204 (5) | 0.49211 (17) | 0.0431 (6) | |
H16 | 0.0683 | 0.6286 | 0.5439 | 0.052* | |
F1 | 0.34613 (11) | −0.1107 (3) | 0.81944 (11) | 0.0793 (6) | |
F2 | 0.27876 (9) | −0.4720 (4) | 0.79671 (12) | 0.0768 (6) | |
F3 | 0.38918 (9) | −0.5133 (4) | 0.86064 (11) | 0.0736 (6) | |
N1 | 0.05877 (11) | 0.9453 (4) | 0.26847 (15) | 0.0543 (6) | |
H1A | 0.0227 | 1.0535 | 0.2707 | 0.065* | |
H1B | 0.0768 | 0.9384 | 0.2206 | 0.065* | |
O1 | 0.15200 (10) | 0.2839 (4) | 0.63840 (13) | 0.0660 (6) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0540 (15) | 0.0454 (14) | 0.0489 (15) | 0.0024 (11) | 0.0046 (12) | 0.0064 (12) |
C2 | 0.0363 (12) | 0.0409 (12) | 0.0441 (13) | −0.0044 (10) | 0.0037 (10) | 0.0006 (11) |
C3 | 0.0437 (14) | 0.0539 (14) | 0.0552 (16) | 0.0059 (11) | 0.0000 (12) | 0.0051 (13) |
C4 | 0.0424 (14) | 0.0695 (17) | 0.0703 (19) | 0.0150 (13) | 0.0132 (13) | −0.0025 (15) |
C5 | 0.0568 (16) | 0.0717 (18) | 0.0522 (16) | 0.0089 (14) | 0.0179 (14) | −0.0028 (14) |
C6 | 0.0482 (14) | 0.0662 (16) | 0.0442 (14) | 0.0107 (13) | 0.0087 (12) | 0.0049 (13) |
C7 | 0.0352 (12) | 0.0448 (13) | 0.0432 (13) | −0.0002 (10) | 0.0065 (10) | 0.0021 (11) |
C8 | 0.0443 (13) | 0.0562 (14) | 0.0439 (14) | 0.0075 (11) | 0.0127 (11) | 0.0048 (12) |
C9 | 0.0473 (14) | 0.0549 (15) | 0.0441 (14) | 0.0092 (11) | 0.0100 (12) | 0.0055 (12) |
C10 | 0.0351 (12) | 0.0461 (13) | 0.0433 (14) | −0.0020 (10) | 0.0070 (10) | −0.0018 (11) |
C11 | 0.0289 (11) | 0.0391 (12) | 0.0443 (13) | −0.0040 (9) | 0.0063 (10) | −0.0018 (10) |
C12 | 0.0340 (12) | 0.0507 (14) | 0.0508 (14) | 0.0063 (10) | 0.0103 (11) | −0.0009 (12) |
C13 | 0.0407 (13) | 0.0590 (15) | 0.0430 (14) | 0.0018 (11) | 0.0130 (11) | 0.0022 (12) |
C14 | 0.0314 (11) | 0.0433 (12) | 0.0469 (14) | −0.0070 (9) | −0.0009 (10) | 0.0021 (11) |
C15 | 0.0352 (12) | 0.0487 (13) | 0.0542 (15) | 0.0075 (10) | 0.0093 (11) | 0.0002 (12) |
C16 | 0.0375 (12) | 0.0496 (13) | 0.0438 (13) | −0.0004 (10) | 0.0118 (10) | −0.0019 (11) |
F1 | 0.1293 (15) | 0.0565 (10) | 0.0519 (10) | 0.0041 (10) | 0.0173 (10) | −0.0057 (8) |
F2 | 0.0622 (10) | 0.1068 (14) | 0.0678 (11) | −0.0078 (9) | 0.0287 (9) | 0.0063 (10) |
F3 | 0.0831 (12) | 0.0847 (12) | 0.0489 (10) | 0.0169 (9) | 0.0029 (9) | 0.0161 (8) |
N1 | 0.0472 (12) | 0.0637 (13) | 0.0503 (13) | 0.0050 (10) | 0.0052 (10) | 0.0114 (11) |
O1 | 0.0664 (12) | 0.0844 (14) | 0.0514 (11) | 0.0276 (10) | 0.0223 (10) | 0.0148 (10) |
Geometric parameters (Å, °)
C1—F1 | 1.349 (3) | C9—C10 | 1.482 (3) |
C1—F2 | 1.332 (3) | C9—H9 | 0.9300 |
C1—F3 | 1.347 (3) | C10—O1 | 1.217 (3) |
C1—C2 | 1.483 (4) | C10—C11 | 1.484 (3) |
C2—C3 | 1.399 (3) | C11—C16 | 1.404 (3) |
C2—C7 | 1.410 (3) | C11—C12 | 1.392 (3) |
C3—C4 | 1.375 (4) | C12—C13 | 1.376 (3) |
C3—H3 | 0.9300 | C12—H12 | 0.9300 |
C4—C5 | 1.374 (4) | C13—C14 | 1.394 (3) |
C4—H4 | 0.9300 | C13—H13 | 0.9300 |
C5—C6 | 1.384 (4) | C14—N1 | 1.383 (3) |
C5—H5 | 0.9300 | C14—C15 | 1.396 (3) |
C6—C7 | 1.389 (3) | C15—C16 | 1.374 (3) |
C6—H6 | 0.9300 | C15—H15 | 0.9300 |
C7—C8 | 1.479 (3) | C16—H16 | 0.9300 |
C8—C9 | 1.296 (4) | N1—H1A | 0.8600 |
C8—H8 | 0.9300 | N1—H1B | 0.8600 |
F1—C1—F2 | 105.4 (2) | C8—C9—C10 | 124.3 (2) |
F1—C1—F3 | 104.9 (2) | C8—C9—H9 | 117.8 |
F2—C1—F3 | 105.2 (2) | C10—C9—H9 | 117.8 |
F1—C1—C2 | 113.2 (2) | O1—C10—C11 | 121.7 (2) |
F2—C1—C2 | 113.6 (2) | O1—C10—C9 | 119.9 (2) |
F3—C1—C2 | 113.7 (2) | C11—C10—C9 | 118.3 (2) |
C3—C2—C7 | 120.6 (2) | C16—C11—C12 | 116.9 (2) |
C3—C2—C1 | 117.9 (2) | C16—C11—C10 | 119.4 (2) |
C7—C2—C1 | 121.4 (2) | C12—C11—C10 | 123.7 (2) |
C4—C3—C2 | 120.2 (3) | C13—C12—C11 | 121.9 (2) |
C4—C3—H3 | 119.9 | C13—C12—H12 | 119.0 |
C2—C3—H3 | 119.9 | C11—C12—H12 | 119.0 |
C3—C4—C5 | 120.1 (2) | C12—C13—C14 | 120.6 (2) |
C3—C4—H4 | 119.9 | C12—C13—H13 | 119.7 |
C5—C4—H4 | 119.9 | C14—C13—H13 | 119.7 |
C6—C5—C4 | 119.7 (3) | N1—C14—C15 | 121.4 (2) |
C6—C5—H5 | 120.1 | N1—C14—C13 | 120.3 (2) |
C4—C5—H5 | 120.1 | C15—C14—C13 | 118.2 (2) |
C5—C6—C7 | 122.4 (3) | C16—C15—C14 | 120.8 (2) |
C5—C6—H6 | 118.8 | C16—C15—H15 | 119.6 |
C7—C6—H6 | 118.8 | C14—C15—H15 | 119.6 |
C6—C7—C2 | 116.9 (2) | C15—C16—C11 | 121.6 (2) |
C6—C7—C8 | 120.1 (2) | C15—C16—H16 | 119.2 |
C2—C7—C8 | 123.0 (2) | C11—C16—H16 | 119.2 |
C9—C8—C7 | 126.4 (2) | C14—N1—H1A | 120.0 |
C9—C8—H8 | 116.8 | C14—N1—H1B | 120.0 |
C7—C8—H8 | 116.8 | H1A—N1—H1B | 120.0 |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N1i | 0.86 | 2.42 | 3.235 (3) | 158 |
N1—H1B···O1ii | 0.86 | 2.45 | 3.162 (3) | 140 |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) x, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2037).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014169/zq2037sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014169/zq2037Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report