Abstract
The title compound, C12H9ClN2OS2, exists in the thioamide form with an intramolecular N—H⋯O hydrogen bond across the thiourea and the carbonyl group. The dihedral angle between the rings is 10.36 (11)°. In the crystal structure, molecules are linked into chains by weak intermolecular C—H⋯Cl hydrogen-bonding interactions.
Related literature
For general background to the biological activity of thiourea derivatives, see: Xu et al. (2004 ▶); Gu et al. (2007 ▶). For related structures, see: Saeed et al. (2008 ▶, 2009 ▶). For the cytotoxicity of anticancer drugs to normal cells in cancer therapy, see: Saeed et al. (2010 ▶).
Experimental
Crystal data
C12H9ClN2OS2
M r = 296.78
Monoclinic,
a = 4.6552 (7) Å
b = 11.660 (2) Å
c = 23.630 (4) Å
β = 95.626 (2)°
V = 1276.4 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.61 mm−1
T = 300 K
0.42 × 0.19 × 0.08 mm
Data collection
Bruker SMART 1000 CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.783, T max = 0.953
8549 measured reflections
3102 independent reflections
2578 reflections with I > 2σ(I)
R int = 0.019
Refinement
R[F 2 > 2σ(F 2)] = 0.038
wR(F 2) = 0.107
S = 1.07
3102 reflections
172 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.31 e Å−3
Δρmin = −0.20 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT and CrystalStructure (Rigaku/MSC and Rigaku, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810013863/lx2142sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013863/lx2142Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N⋯O1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
| C12—H12⋯Cl1i | 0.93 | 2.69 | 3.523 (2) | 149 |
Symmetry code: (i)
.
Acknowledgments
The authors are grateful to the Department of Chemistry, Research Complex, Allama Iqbal Open University, Islamabad, and The Hong Kong Polytechnic University for providing laboratory and analytical facilities.
supplementary crystallographic information
Comment
Thiourea and its derivatives are an important class of organic compounds in which sulfur is the major ligand atom which plays an important role in coordination chemistry with transition metals. Thiourea and its derivatives have found extensive applications in the fields of medicine, agriculture and analytical chemistry. Thioureas are also known to exhibit a wide range of biological activities including anticancer (Saeed et al., 2010), antifungal (Saeed et al., 2008), antiviral, antibacterial, anti-tubercular, anti-thyroidal, herbicidal and insecticidal activities, organocatalyst (Gu et al., 2007) and as agrochemicals (Xu et al., 2004).
The 4-chlorophenyl ring is slightly twisted {15.04 (8)°} from the thiourea plane. The thioureido group is also slightly twisted {5.0 (1)°} from the thiophene ring plane of S2/C9/C10/C11/C12. The molecular packing (Fig. 2) exhibits the thioamide form with an intramolecular N–H···O hydrogen bond across the thiourea system, with a N1–H1N···O1 (Table 1). The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···Cl hydrogen bonds between the thiophene H atom and the chlorine of an adjacent molecule, with a C12–H12···Cl1i (Table 1).
Experimental
A solution of 2-thiophenecarbonyl chloride (0.01 mol) in anhydrous acetone (80 ml) was added dropwise to a suspension of ammonium thiocyanate (0.01 mol) in anhydrous acetone (50 ml) and the reaction mixture was refluxed for 50 minutes. After cooling to room temperature, a solution of 4-chloroaniline (0.01 mol) in dry acetone (25 ml) was added and the resulting mixture refluxed for 2 h. The reaction mixture was poured into five times its volume of cold water, upon which the thiourea precipitated. The product was recrystallized from ethanol as white block crystals.
Refinement
The H atoms bound C atoms were located from difference Fourier map and refined freely. All H atoms of C atoms were positioned geometrically and refined using a riding model, with C–H = 0.93 Å for aryl and thiophenyl H atoms. Uiso(H) = 1.2Ueq(C) for aryl thiophenyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are presented as a small spheres of arbitrary radius.
Fig. 2.
N–H···O and C–H···Cl interactions (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) x - 5/2, - y + 1/2, z - 1/2 (ii) x + 5/2, - y + 1/2, z + 1/2.]
Crystal data
| C12H9ClN2OS2 | F(000) = 608 |
| Mr = 296.78 | Dx = 1.544 Mg m−3 |
| Monoclinic, P21/n | Melting point: 412 K |
| Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
| a = 4.6552 (7) Å | Cell parameters from 8801 reflections |
| b = 11.660 (2) Å | θ = 1.7–28.3° |
| c = 23.630 (4) Å | µ = 0.61 mm−1 |
| β = 95.626 (2)° | T = 300 K |
| V = 1276.4 (4) Å3 | Prism, yellow |
| Z = 4 | 0.42 × 0.19 × 0.08 mm |
Data collection
| Bruker SMART 1000 CCD diffractometer | 3102 independent reflections |
| Radiation source: fine-focus sealed tube | 2578 reflections with I > 2σ(I) |
| graphite | Rint = 0.019 |
| ω scan | θmax = 28.3°, θmin = 1.7° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −6→6 |
| Tmin = 0.783, Tmax = 0.953 | k = −9→15 |
| 8549 measured reflections | l = −30→31 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.3548P] where P = (Fo2 + 2Fc2)/3 |
| 3102 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 1.37357 (11) | 0.14501 (5) | 0.54454 (2) | 0.06174 (17) | |
| S1 | 0.42417 (13) | 0.54355 (4) | 0.38816 (3) | 0.06558 (19) | |
| S2 | −0.38487 (12) | 0.23708 (4) | 0.20193 (2) | 0.05870 (17) | |
| O1 | 0.0745 (3) | 0.22204 (11) | 0.29637 (6) | 0.0549 (3) | |
| N1 | 0.4375 (3) | 0.31315 (13) | 0.37757 (6) | 0.0426 (3) | |
| H1N | 0.357 (5) | 0.2572 (18) | 0.3578 (9) | 0.053 (6)* | |
| N2 | 0.0880 (3) | 0.41119 (13) | 0.32158 (7) | 0.0446 (3) | |
| H2N | 0.001 (5) | 0.475 (2) | 0.3134 (10) | 0.063 (7)* | |
| C1 | 1.1034 (4) | 0.19841 (16) | 0.49542 (8) | 0.0448 (4) | |
| C2 | 0.9940 (4) | 0.12913 (16) | 0.45099 (8) | 0.0470 (4) | |
| H2 | 1.0655 | 0.0554 | 0.4470 | 0.056* | |
| C3 | 0.7761 (4) | 0.17123 (15) | 0.41242 (7) | 0.0446 (4) | |
| H3 | 0.7010 | 0.1254 | 0.3823 | 0.053* | |
| C4 | 0.6685 (4) | 0.28161 (15) | 0.41829 (7) | 0.0395 (3) | |
| C5 | 0.7819 (4) | 0.34955 (16) | 0.46329 (8) | 0.0486 (4) | |
| H5 | 0.7111 | 0.4233 | 0.4677 | 0.058* | |
| C6 | 1.0007 (4) | 0.30746 (17) | 0.50170 (8) | 0.0506 (4) | |
| H6 | 1.0777 | 0.3531 | 0.5317 | 0.061* | |
| C7 | 0.3216 (4) | 0.41540 (14) | 0.36378 (7) | 0.0409 (4) | |
| C8 | −0.0182 (4) | 0.32019 (15) | 0.28912 (7) | 0.0408 (4) | |
| C9 | −0.2510 (4) | 0.34711 (15) | 0.24497 (7) | 0.0413 (4) | |
| C10 | −0.3865 (4) | 0.44880 (17) | 0.22982 (8) | 0.0499 (4) | |
| H10 | −0.3439 | 0.5183 | 0.2481 | 0.060* | |
| C11 | −0.5988 (5) | 0.43535 (18) | 0.18316 (9) | 0.0574 (5) | |
| H11 | −0.7109 | 0.4952 | 0.1671 | 0.069* | |
| C12 | −0.6202 (5) | 0.32616 (19) | 0.16464 (9) | 0.0586 (5) | |
| H12 | −0.7503 | 0.3022 | 0.1346 | 0.070* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0533 (3) | 0.0688 (3) | 0.0585 (3) | −0.0017 (2) | −0.0177 (2) | 0.0113 (2) |
| S1 | 0.0745 (4) | 0.0364 (2) | 0.0783 (4) | −0.0039 (2) | −0.0311 (3) | −0.0049 (2) |
| S2 | 0.0706 (3) | 0.0434 (3) | 0.0563 (3) | 0.0030 (2) | −0.0228 (2) | −0.0074 (2) |
| O1 | 0.0672 (9) | 0.0381 (6) | 0.0547 (8) | 0.0023 (6) | −0.0187 (6) | −0.0028 (6) |
| N1 | 0.0463 (8) | 0.0358 (7) | 0.0429 (8) | −0.0042 (6) | −0.0088 (6) | −0.0016 (6) |
| N2 | 0.0469 (8) | 0.0372 (7) | 0.0466 (8) | 0.0002 (6) | −0.0105 (6) | −0.0020 (6) |
| C1 | 0.0384 (8) | 0.0518 (10) | 0.0427 (9) | −0.0060 (7) | −0.0035 (7) | 0.0076 (7) |
| C2 | 0.0494 (10) | 0.0429 (9) | 0.0473 (9) | 0.0012 (8) | −0.0023 (7) | 0.0025 (7) |
| C3 | 0.0491 (9) | 0.0403 (9) | 0.0423 (9) | −0.0046 (7) | −0.0060 (7) | −0.0026 (7) |
| C4 | 0.0387 (8) | 0.0392 (8) | 0.0394 (8) | −0.0047 (6) | −0.0026 (6) | 0.0029 (7) |
| C5 | 0.0552 (10) | 0.0416 (9) | 0.0465 (9) | −0.0005 (8) | −0.0075 (8) | −0.0035 (7) |
| C6 | 0.0526 (10) | 0.0501 (10) | 0.0460 (9) | −0.0084 (8) | −0.0113 (8) | −0.0045 (8) |
| C7 | 0.0418 (8) | 0.0395 (8) | 0.0401 (8) | −0.0048 (7) | −0.0030 (6) | −0.0010 (7) |
| C8 | 0.0428 (8) | 0.0395 (8) | 0.0388 (8) | −0.0031 (7) | −0.0020 (6) | 0.0002 (7) |
| C9 | 0.0436 (8) | 0.0394 (9) | 0.0392 (8) | −0.0041 (7) | −0.0042 (6) | 0.0001 (7) |
| C10 | 0.0528 (10) | 0.0419 (10) | 0.0519 (10) | 0.0004 (8) | −0.0098 (8) | 0.0005 (8) |
| C11 | 0.0578 (11) | 0.0509 (11) | 0.0595 (12) | 0.0041 (9) | −0.0146 (9) | 0.0077 (9) |
| C12 | 0.0620 (12) | 0.0570 (12) | 0.0514 (10) | −0.0013 (9) | −0.0214 (9) | 0.0007 (9) |
Geometric parameters (Å, °)
| Cl1—C1 | 1.7408 (18) | C2—H2 | 0.9300 |
| S1—C7 | 1.6548 (17) | C3—C4 | 1.393 (2) |
| S2—C12 | 1.693 (2) | C3—H3 | 0.9300 |
| S2—C9 | 1.7158 (17) | C4—C5 | 1.388 (2) |
| O1—C8 | 1.229 (2) | C5—C6 | 1.386 (3) |
| N1—C7 | 1.336 (2) | C5—H5 | 0.9300 |
| N1—C4 | 1.419 (2) | C6—H6 | 0.9300 |
| N1—H1N | 0.87 (2) | C8—C9 | 1.463 (2) |
| N2—C8 | 1.373 (2) | C9—C10 | 1.374 (2) |
| N2—C7 | 1.402 (2) | C10—C11 | 1.415 (3) |
| N2—H2N | 0.86 (2) | C10—H10 | 0.9300 |
| C1—C6 | 1.372 (3) | C11—C12 | 1.347 (3) |
| C1—C2 | 1.382 (3) | C11—H11 | 0.9300 |
| C2—C3 | 1.385 (2) | C12—H12 | 0.9300 |
| C12—S2—C9 | 91.64 (10) | C1—C6—C5 | 119.94 (17) |
| C7—N1—C4 | 131.12 (15) | C1—C6—H6 | 120.0 |
| C7—N1—H1N | 113.5 (14) | C5—C6—H6 | 120.0 |
| C4—N1—H1N | 115.4 (14) | N1—C7—N2 | 114.12 (15) |
| C8—N2—C7 | 129.51 (16) | N1—C7—S1 | 128.69 (13) |
| C8—N2—H2N | 113.9 (16) | N2—C7—S1 | 117.15 (13) |
| C7—N2—H2N | 116.5 (16) | O1—C8—N2 | 122.64 (16) |
| C6—C1—C2 | 121.18 (16) | O1—C8—C9 | 121.65 (16) |
| C6—C1—Cl1 | 119.75 (14) | N2—C8—C9 | 115.71 (15) |
| C2—C1—Cl1 | 119.06 (15) | C10—C9—C8 | 131.32 (16) |
| C1—C2—C3 | 118.96 (17) | C10—C9—S2 | 111.10 (13) |
| C1—C2—H2 | 120.5 | C8—C9—S2 | 117.57 (13) |
| C3—C2—H2 | 120.5 | C9—C10—C11 | 112.03 (17) |
| C2—C3—C4 | 120.61 (16) | C9—C10—H10 | 124.0 |
| C2—C3—H3 | 119.7 | C11—C10—H10 | 124.0 |
| C4—C3—H3 | 119.7 | C12—C11—C10 | 112.44 (18) |
| C5—C4—C3 | 119.35 (16) | C12—C11—H11 | 123.8 |
| C5—C4—N1 | 125.26 (16) | C10—C11—H11 | 123.8 |
| C3—C4—N1 | 115.33 (15) | C11—C12—S2 | 112.79 (15) |
| C6—C5—C4 | 119.96 (18) | C11—C12—H12 | 123.6 |
| C6—C5—H5 | 120.0 | S2—C12—H12 | 123.6 |
| C4—C5—H5 | 120.0 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···O1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
| C12—H12···Cl1i | 0.93 | 2.69 | 3.523 (2) | 149 |
Symmetry codes: (i) x−5/2, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LX2142).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810013863/lx2142sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013863/lx2142Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


