Abstract
In the title compound, C13H22N2O, the central imidazolidine ring is in an envelope conformation and the two cyclohexane rings adopt chair conformations. In the crystal structure, the molecules are linked into centrosymmetric R 2 2(8) dimers by pairs of N—H⋯O hydrogen bonds.
Related literature
For general background to imidazolidine derivatives, see: Tsao et al. (1991 ▶); Wang et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶); Nardelli (1995 ▶).
Experimental
Crystal data
C13H22N2O
M r = 222.33
Triclinic,
a = 5.8270 (8) Å
b = 10.1703 (5) Å
c = 10.6651 (4) Å
α = 86.103 (2)°
β = 81.331 (3)°
γ = 89.720 (3)°
V = 623.36 (9) Å3
Z = 2
Mo Kα radiation
μ = 0.08 mm−1
T = 293 K
0.20 × 0.15 × 0.15 mm
Data collection
Bruker Kappa APEXII area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.985, T max = 0.989
11727 measured reflections
2311 independent reflections
2023 reflections with I > 2σ(I)
R int = 0.020
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.104
S = 1.04
2311 reflections
153 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.22 e Å−3
Δρmin = −0.16 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810012468/ci5049sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810012468/ci5049Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3⋯O1i | 0.87 (2) | 2.02 (2) | 2.8821 (14) | 172 (1) |
Symmetry code: (i)
.
Acknowledgments
TK thanks the CSIR, India, for financial support in the form of a Senior Research Fellowship. SP thanks the UGC, India, for financial support.
supplementary crystallographic information
Comment
Imidazolidines occupy a unique position among the five-membered heterocycles and are highly used in synthetic as well as mechanistic organic chemistry and biochemistry (Tsao et al., 1991). Imidazolidine derivatives are important intermediates and building blocks in the construction of various biologically active compounds (Wang et al., 1995).
In the title molecule (Fig. 1), the five-membered imidazolidine ring is transfused with two cyclohexane rings. The bond lengths are comparable to the reported values (Allen et al., 1987). The imidazolidine ring adopts an envelope conformation, with flap atom N1 deviating by 0.198 (2) Å from the C2/N3/C4/C5 plane. The asymmetry parameters for the imidazolidine ring shows that a mirror plane is passing through the atom N1 [ΔCs = 2.7 (1)] (Nardelli, 1995); the puckering parameters [q2 = 0.128 (1) Å and φ(2) = 187.8 (5)°] (Cremer & Pople, 1975) also support the above fact. The sum of the bond angles around N1 (326.6°) shows sp3 hybridization and atom N3 (359.6°) is in accordance with sp2 hybridization. The two cyclohexane rings adopt chair conformations.
In the crystal, molecules are linked into centrosymmetric R22(8) (Bernstein et al., 1995) dimers by pairs of N—H···O hydrogen bonds (Table 1).
Experimental
Potassium cyanide (20 mmol), ammonium chloride (20 mmol) and aqueous ammonium sulfide (30 ml) were dissolved in water (50 ml). Cyclohexanone (40 mmol) was slowly added into the above reaction mixture and stirred for 8 h at 333 K. The precipitated cyclohexan-1-spiro-2'-(imidazolidin-4'-thione)-5'-spiro-1''-cyclohexane was filtered. An ice-cold solution of the above imidazolidin-4-thione (5 mm0l) in glacial acetic acid (5 ml) was treated with hydrogen peroxide (30%, 5 ml) and kept at room temperature for 24 h. The reaction mixture was poured into crushed ice and extracted with ether (40 ml). Evaporation of ether yielded the title compound which was recrystallized by slow evaporation of a water–acetone (20:2) solution.
Refinement
N-bound H atoms were located in a difference map and refined freely. C-bound H atoms were positioned geometrically (C—H = 0.97 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms are shown as circles with arbitrary radii.
Fig. 2.
Crystal packing of the title compound. Dashed line indicate hydrogen bonds. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity.
Crystal data
| C13H22N2O | Z = 2 |
| Mr = 222.33 | F(000) = 244 |
| Triclinic, P1 | Dx = 1.184 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 5.8270 (8) Å | Cell parameters from 2023 reflections |
| b = 10.1703 (5) Å | θ = 2.7–25.5° |
| c = 10.6651 (4) Å | µ = 0.08 mm−1 |
| α = 86.103 (2)° | T = 293 K |
| β = 81.331 (3)° | Block, colourless |
| γ = 89.720 (3)° | 0.20 × 0.15 × 0.15 mm |
| V = 623.36 (9) Å3 |
Data collection
| Bruker Kappa APEXII area-detector diffractometer | 2311 independent reflections |
| Radiation source: fine-focus sealed tube | 2023 reflections with I > 2σ(I) |
| graphite | Rint = 0.020 |
| ω scans | θmax = 25.5°, θmin = 2.7° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −7→7 |
| Tmin = 0.985, Tmax = 0.989 | k = −12→12 |
| 11727 measured reflections | l = −12→12 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0492P)2 + 0.1487P] where P = (Fo2 + 2Fc2)/3 |
| 2311 reflections | (Δ/σ)max = 0.001 |
| 153 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.1812 (2) | 0.23573 (12) | 0.32312 (10) | 0.0440 (3) | |
| C2 | 0.17511 (19) | 0.25258 (11) | 0.45994 (11) | 0.0320 (3) | |
| N3 | 0.32230 (18) | 0.36886 (10) | 0.46055 (9) | 0.0348 (3) | |
| C4 | 0.4384 (2) | 0.40747 (12) | 0.34701 (11) | 0.0348 (3) | |
| C5 | 0.3691 (2) | 0.31781 (12) | 0.24982 (11) | 0.0346 (3) | |
| C6 | −0.0713 (2) | 0.27667 (14) | 0.52388 (13) | 0.0438 (3) | |
| H6A | −0.1707 | 0.2053 | 0.5079 | 0.053* | |
| H6B | −0.1280 | 0.3579 | 0.4866 | 0.053* | |
| C7 | −0.0869 (3) | 0.28619 (17) | 0.66709 (14) | 0.0553 (4) | |
| H7A | −0.0018 | 0.3634 | 0.6834 | 0.066* | |
| H7B | −0.2480 | 0.2964 | 0.7042 | 0.066* | |
| C8 | 0.0116 (3) | 0.16453 (18) | 0.72887 (14) | 0.0630 (5) | |
| H8A | −0.0819 | 0.0882 | 0.7193 | 0.076* | |
| H8B | 0.0065 | 0.1748 | 0.8190 | 0.076* | |
| C9 | 0.2598 (3) | 0.14319 (15) | 0.66826 (14) | 0.0544 (4) | |
| H9A | 0.3184 | 0.0629 | 0.7061 | 0.065* | |
| H9B | 0.3557 | 0.2160 | 0.6845 | 0.065* | |
| C10 | 0.2759 (2) | 0.13315 (12) | 0.52573 (13) | 0.0416 (3) | |
| H10A | 0.1936 | 0.0547 | 0.5101 | 0.050* | |
| H10B | 0.4375 | 0.1239 | 0.4892 | 0.050* | |
| C11 | 0.5811 (2) | 0.23629 (14) | 0.20042 (13) | 0.0445 (3) | |
| H11A | 0.7096 | 0.2953 | 0.1672 | 0.053* | |
| H11B | 0.6265 | 0.1814 | 0.2704 | 0.053* | |
| C12 | 0.5332 (3) | 0.14931 (15) | 0.09662 (13) | 0.0529 (4) | |
| H12A | 0.6733 | 0.1022 | 0.0657 | 0.064* | |
| H12B | 0.4145 | 0.0848 | 0.1315 | 0.064* | |
| C13 | 0.4534 (3) | 0.23098 (16) | −0.01285 (13) | 0.0577 (4) | |
| H13A | 0.5781 | 0.2893 | −0.0532 | 0.069* | |
| H13B | 0.4159 | 0.1731 | −0.0756 | 0.069* | |
| C14 | 0.2427 (3) | 0.31170 (16) | 0.03279 (13) | 0.0572 (4) | |
| H14A | 0.1125 | 0.2531 | 0.0636 | 0.069* | |
| H14B | 0.2020 | 0.3675 | −0.0379 | 0.069* | |
| C15 | 0.2867 (3) | 0.39759 (14) | 0.13896 (12) | 0.0467 (3) | |
| H15A | 0.4029 | 0.4638 | 0.1048 | 0.056* | |
| H15B | 0.1446 | 0.4429 | 0.1697 | 0.056* | |
| O1 | 0.58158 (18) | 0.49753 (9) | 0.32312 (8) | 0.0496 (3) | |
| H3 | 0.345 (3) | 0.4032 (16) | 0.5305 (15) | 0.053 (4)* | |
| H1 | 0.043 (4) | 0.265 (2) | 0.301 (2) | 0.097 (7)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0481 (7) | 0.0532 (7) | 0.0324 (6) | −0.0184 (5) | −0.0079 (5) | −0.0091 (5) |
| C2 | 0.0332 (6) | 0.0333 (6) | 0.0310 (6) | −0.0062 (5) | −0.0078 (5) | −0.0063 (5) |
| N3 | 0.0434 (6) | 0.0335 (5) | 0.0290 (5) | −0.0089 (4) | −0.0078 (4) | −0.0070 (4) |
| C4 | 0.0404 (6) | 0.0332 (6) | 0.0323 (6) | −0.0054 (5) | −0.0089 (5) | −0.0047 (5) |
| C5 | 0.0399 (6) | 0.0357 (6) | 0.0294 (6) | −0.0071 (5) | −0.0076 (5) | −0.0054 (5) |
| C6 | 0.0334 (7) | 0.0506 (8) | 0.0486 (8) | −0.0011 (6) | −0.0088 (5) | −0.0054 (6) |
| C7 | 0.0424 (8) | 0.0719 (10) | 0.0494 (8) | −0.0067 (7) | 0.0067 (6) | −0.0177 (7) |
| C8 | 0.0770 (11) | 0.0735 (11) | 0.0361 (8) | −0.0247 (9) | −0.0025 (7) | 0.0021 (7) |
| C9 | 0.0700 (10) | 0.0470 (8) | 0.0491 (8) | −0.0036 (7) | −0.0236 (7) | 0.0091 (6) |
| C10 | 0.0433 (7) | 0.0316 (6) | 0.0512 (8) | −0.0003 (5) | −0.0098 (6) | −0.0051 (5) |
| C11 | 0.0459 (7) | 0.0468 (7) | 0.0424 (7) | 0.0003 (6) | −0.0091 (6) | −0.0098 (6) |
| C12 | 0.0659 (9) | 0.0470 (8) | 0.0465 (8) | 0.0030 (7) | −0.0041 (7) | −0.0166 (6) |
| C13 | 0.0811 (11) | 0.0589 (9) | 0.0338 (7) | −0.0059 (8) | −0.0051 (7) | −0.0151 (6) |
| C14 | 0.0735 (10) | 0.0669 (10) | 0.0363 (7) | 0.0019 (8) | −0.0219 (7) | −0.0100 (7) |
| C15 | 0.0609 (9) | 0.0459 (8) | 0.0359 (7) | 0.0046 (6) | −0.0135 (6) | −0.0063 (6) |
| O1 | 0.0645 (6) | 0.0472 (5) | 0.0371 (5) | −0.0263 (5) | −0.0055 (4) | −0.0052 (4) |
Geometric parameters (Å, °)
| N1—C5 | 1.4724 (16) | C8—H8B | 0.97 |
| N1—C2 | 1.4759 (15) | C9—C10 | 1.5192 (19) |
| N1—H1 | 0.91 (2) | C9—H9A | 0.97 |
| C2—N3 | 1.4652 (14) | C9—H9B | 0.97 |
| C2—C6 | 1.5203 (17) | C10—H10A | 0.97 |
| C2—C10 | 1.5213 (17) | C10—H10B | 0.97 |
| N3—C4 | 1.3300 (16) | C11—C12 | 1.5213 (18) |
| N3—H3 | 0.872 (17) | C11—H11A | 0.97 |
| C4—O1 | 1.2296 (15) | C11—H11B | 0.97 |
| C4—C5 | 1.5255 (15) | C12—C13 | 1.516 (2) |
| C5—C15 | 1.5243 (18) | C12—H12A | 0.97 |
| C5—C11 | 1.5315 (18) | C12—H12B | 0.97 |
| C6—C7 | 1.5260 (19) | C13—C14 | 1.511 (2) |
| C6—H6A | 0.97 | C13—H13A | 0.97 |
| C6—H6B | 0.97 | C13—H13B | 0.97 |
| C7—C8 | 1.514 (2) | C14—C15 | 1.5281 (18) |
| C7—H7A | 0.97 | C14—H14A | 0.97 |
| C7—H7B | 0.97 | C14—H14B | 0.97 |
| C8—C9 | 1.514 (2) | C15—H15A | 0.97 |
| C8—H8A | 0.97 | C15—H15B | 0.97 |
| C5—N1—C2 | 109.28 (9) | C10—C9—H9A | 109.4 |
| C5—N1—H1 | 108.7 (14) | C8—C9—H9B | 109.4 |
| C2—N1—H1 | 107.6 (14) | C10—C9—H9B | 109.4 |
| N3—C2—N1 | 103.04 (9) | H9A—C9—H9B | 108.0 |
| N3—C2—C6 | 111.13 (10) | C9—C10—C2 | 112.71 (11) |
| N1—C2—C6 | 110.88 (10) | C9—C10—H10A | 109.0 |
| N3—C2—C10 | 110.55 (9) | C2—C10—H10A | 109.0 |
| N1—C2—C10 | 111.11 (10) | C9—C10—H10B | 109.0 |
| C6—C2—C10 | 109.97 (10) | C2—C10—H10B | 109.0 |
| C4—N3—C2 | 113.89 (9) | H10A—C10—H10B | 107.8 |
| C4—N3—H3 | 123.1 (10) | C12—C11—C5 | 112.13 (11) |
| C2—N3—H3 | 122.6 (10) | C12—C11—H11A | 109.2 |
| O1—C4—N3 | 126.68 (11) | C5—C11—H11A | 109.2 |
| O1—C4—C5 | 125.05 (11) | C12—C11—H11B | 109.2 |
| N3—C4—C5 | 108.25 (10) | C5—C11—H11B | 109.2 |
| N1—C5—C15 | 111.71 (11) | H11A—C11—H11B | 107.9 |
| N1—C5—C4 | 103.74 (9) | C13—C12—C11 | 110.91 (12) |
| C15—C5—C4 | 111.26 (10) | C13—C12—H12A | 109.5 |
| N1—C5—C11 | 112.27 (11) | C11—C12—H12A | 109.5 |
| C15—C5—C11 | 109.53 (10) | C13—C12—H12B | 109.5 |
| C4—C5—C11 | 108.18 (10) | C11—C12—H12B | 109.5 |
| C2—C6—C7 | 112.42 (11) | H12A—C12—H12B | 108.0 |
| C2—C6—H6A | 109.1 | C14—C13—C12 | 111.04 (12) |
| C7—C6—H6A | 109.1 | C14—C13—H13A | 109.4 |
| C2—C6—H6B | 109.1 | C12—C13—H13A | 109.4 |
| C7—C6—H6B | 109.1 | C14—C13—H13B | 109.4 |
| H6A—C6—H6B | 107.9 | C12—C13—H13B | 109.4 |
| C8—C7—C6 | 111.17 (12) | H13A—C13—H13B | 108.0 |
| C8—C7—H7A | 109.4 | C13—C14—C15 | 111.62 (12) |
| C6—C7—H7A | 109.4 | C13—C14—H14A | 109.3 |
| C8—C7—H7B | 109.4 | C15—C14—H14A | 109.3 |
| C6—C7—H7B | 109.4 | C13—C14—H14B | 109.3 |
| H7A—C7—H7B | 108.0 | C15—C14—H14B | 109.3 |
| C7—C8—C9 | 110.33 (12) | H14A—C14—H14B | 108.0 |
| C7—C8—H8A | 109.6 | C5—C15—C14 | 112.45 (11) |
| C9—C8—H8A | 109.6 | C5—C15—H15A | 109.1 |
| C7—C8—H8B | 109.6 | C14—C15—H15A | 109.1 |
| C9—C8—H8B | 109.6 | C5—C15—H15B | 109.1 |
| H8A—C8—H8B | 108.1 | C14—C15—H15B | 109.1 |
| C8—C9—C10 | 111.04 (12) | H15A—C15—H15B | 107.8 |
| C8—C9—H9A | 109.4 | ||
| C5—N1—C2—N3 | 13.53 (13) | C10—C2—C6—C7 | 53.21 (14) |
| C5—N1—C2—C6 | 132.50 (11) | C2—C6—C7—C8 | −55.77 (16) |
| C5—N1—C2—C10 | −104.88 (12) | C6—C7—C8—C9 | 56.55 (17) |
| N1—C2—N3—C4 | −9.88 (14) | C7—C8—C9—C10 | −56.59 (17) |
| C6—C2—N3—C4 | −128.68 (11) | C8—C9—C10—C2 | 55.99 (16) |
| C10—C2—N3—C4 | 108.91 (12) | N3—C2—C10—C9 | 69.59 (14) |
| C2—N3—C4—O1 | −176.02 (12) | N1—C2—C10—C9 | −176.64 (11) |
| C2—N3—C4—C5 | 2.38 (14) | C6—C2—C10—C9 | −53.49 (14) |
| C2—N1—C5—C15 | −132.29 (11) | N1—C5—C11—C12 | 69.59 (14) |
| C2—N1—C5—C4 | −12.35 (13) | C15—C5—C11—C12 | −55.11 (15) |
| C2—N1—C5—C11 | 104.22 (12) | C4—C5—C11—C12 | −176.55 (11) |
| O1—C4—C5—N1 | −175.37 (12) | C5—C11—C12—C13 | 56.86 (16) |
| N3—C4—C5—N1 | 6.20 (13) | C11—C12—C13—C14 | −56.04 (17) |
| O1—C4—C5—C15 | −55.12 (17) | C12—C13—C14—C15 | 54.99 (18) |
| N3—C4—C5—C15 | 126.44 (12) | N1—C5—C15—C14 | −71.20 (15) |
| O1—C4—C5—C11 | 65.24 (16) | C4—C5—C15—C14 | 173.39 (12) |
| N3—C4—C5—C11 | −113.19 (12) | C11—C5—C15—C14 | 53.83 (15) |
| N3—C2—C6—C7 | −69.54 (14) | C13—C14—C15—C5 | −54.77 (17) |
| N1—C2—C6—C7 | 176.48 (11) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3···O1i | 0.87 (2) | 2.02 (2) | 2.8821 (14) | 172 (1) |
Symmetry codes: (i) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI5049).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brummer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
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- Nardelli, M. (1995). J. Appl. Cryst.28, 659.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810012468/ci5049sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810012468/ci5049Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


