Abstract
In the title compound, C18H11ClN2O2, the isatin and 2-chloro-3-methylquinoline units are both almost planar, with r.m.s. deviations of 0.0075 and 0.0086 Å, respectively, and the dihedral angle between the mean planes of the two units is 83.13 (7)°. In the crystal, a weak intermolecular C—H⋯ O interaction links the molecules into chains along the c axis.
Related literature
For background to the use of N-substituted indole-2,3-diones as intermediates and synthetic precursors for the preparation of heterocyclic compounds, see: Silaicheva et al. (2009 ▶). For the biological activity of N-substituted indole-2,3-diones, see: Vine et al. (2007 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C18H11ClN2O2
M r = 322.74
Monoclinic,
a = 21.4984 (8) Å
b = 5.3061 (2) Å
c = 13.0356 (4) Å
β = 99.718 (3)°
V = 1465.67 (9) Å3
Z = 4
Mo Kα radiation
μ = 0.27 mm−1
T = 293 K
0.33 × 0.30 × 0.27 mm
Data collection
Oxford Diffraction Excalibur diffractometer
17920 measured reflections
2724 independent reflections
1731 reflections with I > 2σ(I)
R int = 0.050
Refinement
R[F 2 > 2σ(F 2)] = 0.037
wR(F 2) = 0.085
S = 0.90
2724 reflections
208 parameters
H-atom parameters constrained
Δρmax = 0.21 e Å−3
Δρmin = −0.23 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013966/pv2276sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013966/pv2276Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C17—H17⋯O2i | 0.93 | 2.48 | 3.367 (3) | 160 |
Symmetry code: (i)
.
Acknowledgments
We thank the Department of Science and Technology, India, for use of the CCD facility set up under the FIST–DST program at SSCU, IISc. We also thank Professor T. N. Guru Row, IISc, Bangalore, for his help with the data collection. FNK thanks the DST for Fast Track Proposal funding.
supplementary crystallographic information
Comment
N-substituted indole-2,3-diones have been frequently used as intermediates and synthetic precursors for the preparation of a wide variety of heterocyclic compounds (Silaicheva et al., 2009). In addition, they possess different biological activities such as cytotoxicity, antiviral activity and selective caspase inhibitions, etc. (Vine et al., 2007). We have synthesized a novel isatin derivative and determined its crystal structure which is presented in this article.
In the title molecule, the atoms (C11—C18/N2/O1/O2) of the isatin moiety and 2-chloro-3-methylquinoline group (C1—C8/N1/Cl1) are individually planar with maximum r.m.s. deviations of 0.0075 and 0.0086 Å, respectively, from their mean-planes. The dihedral angle between the two ring systems is 83.13 (7)°. The bond distances and angles in the title compound are as expected (Allen et al., 1987). There is a weak intermolecular interaction C17—H17··· O2 linking the molecules into chains along the c-axis.
Experimental
2-Chloro-3-chloromethylquinoline (210 mg, 1 mmol), KOtBu (112 mg, 1 mmol) and isatin (147 mg, 1 mmol) in tetrahydrofuran (10 ml) were taken in a round bottemed flask and the mixture was refluxed at 70 W for 3 min. Ethylacetate (30 ml) was poured into the reaction mixture and filtered off. The filtrate was subjected to column chromatography packed with silica and ethyl acetate/petroleum ether was used as the eluant (4:1). Crystals of suitable quality were grown by slow evaporation from a solution of the title compound in dichloromethane.
Refinement
Hydrogen atoms were placed in calculated positions at C—H = 0.93 and 0.97 Å, for aryl and methylene type H atoms, respectively, and were included in the refinement in riding model approximation, with Uiso(H) set to 1.2Ueq(C).
Figures
Fig. 1.
Molecular structure of the title compound showing atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
Perspective view of the molecular packing of the title compound in the unit cell down the b-axis.
Crystal data
| C18H11ClN2O2 | F(000) = 664 |
| Mr = 322.74 | Dx = 1.463 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2724 reflections |
| a = 21.4984 (8) Å | θ = 2.9–25.5° |
| b = 5.3061 (2) Å | µ = 0.27 mm−1 |
| c = 13.0356 (4) Å | T = 293 K |
| β = 99.718 (3)° | Block, orange |
| V = 1465.67 (9) Å3 | 0.33 × 0.30 × 0.27 mm |
| Z = 4 |
Data collection
| Oxford Diffraction Excalibur diffractometer | 1731 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.050 |
| graphite | θmax = 25.5°, θmin = 2.9° |
| Detector resolution: 0 pixels mm-1 | h = −26→26 |
| ω scans | k = −6→6 |
| 17920 measured reflections | l = −15→15 |
| 2724 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.085 | H-atom parameters constrained |
| S = 0.90 | w = 1/[σ2(Fo2) + (0.0447P)2] where P = (Fo2 + 2Fc2)/3 |
| 2724 reflections | (Δ/σ)max < 0.001 |
| 208 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.32510 (3) | 1.40527 (10) | 0.51979 (4) | 0.0614 (2) | |
| N1 | 0.38948 (7) | 1.0493 (3) | 0.45048 (11) | 0.0458 (4) | |
| C2 | 0.28707 (8) | 1.1294 (3) | 0.34507 (13) | 0.0360 (4) | |
| C3 | 0.29797 (8) | 0.9460 (3) | 0.27719 (13) | 0.0379 (4) | |
| H3 | 0.2675 | 0.9121 | 0.2192 | 0.046* | |
| N2 | 0.18214 (7) | 1.2157 (3) | 0.24049 (11) | 0.0398 (4) | |
| C13 | 0.10081 (8) | 1.0002 (3) | 0.13973 (13) | 0.0376 (4) | |
| C1 | 0.33623 (9) | 1.1692 (3) | 0.43088 (13) | 0.0406 (5) | |
| C14 | 0.13853 (8) | 1.0147 (3) | 0.23746 (14) | 0.0377 (4) | |
| C8 | 0.39988 (8) | 0.8632 (3) | 0.38138 (14) | 0.0407 (5) | |
| O1 | 0.20473 (6) | 1.5156 (3) | 0.12348 (11) | 0.0579 (4) | |
| C4 | 0.36754 (9) | 0.6131 (3) | 0.22547 (15) | 0.0481 (5) | |
| H4 | 0.3382 | 0.5751 | 0.1666 | 0.058* | |
| O2 | 0.10171 (7) | 1.2586 (3) | −0.01339 (11) | 0.0635 (4) | |
| C10 | 0.22789 (9) | 1.2877 (3) | 0.33140 (14) | 0.0463 (5) | |
| H10A | 0.2085 | 1.2717 | 0.3931 | 0.056* | |
| H10B | 0.2392 | 1.4632 | 0.3249 | 0.056* | |
| C9 | 0.35465 (8) | 0.8066 (3) | 0.29322 (13) | 0.0375 (4) | |
| C15 | 0.05482 (9) | 0.8170 (4) | 0.11805 (15) | 0.0477 (5) | |
| H15 | 0.0300 | 0.8064 | 0.0525 | 0.057* | |
| C12 | 0.12083 (8) | 1.1985 (3) | 0.07592 (15) | 0.0423 (5) | |
| C7 | 0.45672 (9) | 0.7252 (4) | 0.39988 (16) | 0.0547 (6) | |
| H7 | 0.4871 | 0.7616 | 0.4576 | 0.066* | |
| C5 | 0.42260 (10) | 0.4820 (4) | 0.24572 (18) | 0.0587 (6) | |
| H5 | 0.4306 | 0.3541 | 0.2010 | 0.070* | |
| C11 | 0.17522 (9) | 1.3370 (4) | 0.14680 (15) | 0.0418 (5) | |
| C6 | 0.46691 (10) | 0.5389 (4) | 0.33319 (19) | 0.0588 (6) | |
| H6 | 0.5043 | 0.4475 | 0.3463 | 0.071* | |
| C18 | 0.13105 (9) | 0.8492 (4) | 0.31574 (15) | 0.0476 (5) | |
| H18 | 0.1561 | 0.8586 | 0.3812 | 0.057* | |
| C16 | 0.04657 (9) | 0.6503 (4) | 0.19561 (18) | 0.0542 (6) | |
| H16 | 0.0156 | 0.5264 | 0.1829 | 0.065* | |
| C17 | 0.08426 (10) | 0.6670 (4) | 0.29230 (18) | 0.0552 (6) | |
| H17 | 0.0781 | 0.5524 | 0.3436 | 0.066* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0765 (4) | 0.0609 (4) | 0.0442 (3) | −0.0082 (3) | 0.0028 (3) | −0.0161 (2) |
| N1 | 0.0427 (10) | 0.0504 (10) | 0.0406 (9) | −0.0072 (8) | −0.0039 (8) | 0.0046 (8) |
| C2 | 0.0363 (10) | 0.0362 (10) | 0.0346 (10) | −0.0046 (9) | 0.0038 (8) | −0.0006 (8) |
| C3 | 0.0337 (10) | 0.0422 (11) | 0.0359 (10) | −0.0036 (9) | 0.0000 (8) | 0.0003 (9) |
| N2 | 0.0341 (9) | 0.0400 (9) | 0.0425 (10) | 0.0007 (7) | −0.0016 (7) | −0.0043 (7) |
| C13 | 0.0320 (10) | 0.0364 (10) | 0.0436 (12) | 0.0019 (9) | 0.0040 (9) | 0.0000 (9) |
| C1 | 0.0460 (12) | 0.0415 (11) | 0.0335 (11) | −0.0096 (10) | 0.0042 (9) | −0.0009 (9) |
| C14 | 0.0340 (11) | 0.0335 (10) | 0.0461 (12) | 0.0066 (9) | 0.0078 (9) | −0.0017 (9) |
| C8 | 0.0319 (11) | 0.0430 (11) | 0.0457 (12) | −0.0052 (9) | 0.0027 (9) | 0.0079 (9) |
| O1 | 0.0489 (9) | 0.0526 (9) | 0.0719 (10) | −0.0123 (7) | 0.0092 (7) | 0.0042 (7) |
| C4 | 0.0427 (12) | 0.0496 (12) | 0.0520 (13) | 0.0032 (10) | 0.0078 (10) | −0.0040 (10) |
| O2 | 0.0690 (10) | 0.0721 (10) | 0.0457 (9) | −0.0133 (8) | −0.0013 (8) | 0.0077 (7) |
| C10 | 0.0439 (12) | 0.0458 (11) | 0.0465 (12) | 0.0017 (10) | 0.0004 (10) | −0.0106 (9) |
| C9 | 0.0326 (11) | 0.0405 (10) | 0.0388 (11) | −0.0039 (9) | 0.0045 (9) | 0.0038 (9) |
| C15 | 0.0394 (12) | 0.0460 (11) | 0.0554 (13) | −0.0005 (10) | 0.0008 (10) | −0.0040 (10) |
| C12 | 0.0402 (12) | 0.0448 (11) | 0.0410 (12) | 0.0026 (9) | 0.0045 (10) | −0.0006 (10) |
| C7 | 0.0337 (12) | 0.0623 (14) | 0.0632 (14) | −0.0041 (11) | −0.0062 (10) | 0.0136 (12) |
| C5 | 0.0492 (14) | 0.0546 (13) | 0.0741 (16) | 0.0050 (11) | 0.0160 (12) | −0.0028 (11) |
| C11 | 0.0330 (11) | 0.0405 (11) | 0.0516 (13) | 0.0026 (10) | 0.0069 (9) | 0.0001 (10) |
| C6 | 0.0395 (13) | 0.0548 (14) | 0.0824 (17) | 0.0074 (11) | 0.0107 (12) | 0.0099 (12) |
| C18 | 0.0476 (13) | 0.0477 (12) | 0.0477 (12) | 0.0142 (11) | 0.0087 (10) | 0.0045 (10) |
| C16 | 0.0413 (13) | 0.0421 (12) | 0.0810 (17) | −0.0023 (10) | 0.0155 (12) | −0.0007 (12) |
| C17 | 0.0576 (14) | 0.0415 (12) | 0.0726 (16) | 0.0104 (11) | 0.0282 (13) | 0.0122 (11) |
Geometric parameters (Å, °)
| Cl1—C1 | 1.7503 (18) | C4—C9 | 1.412 (2) |
| N1—C1 | 1.297 (2) | C4—H4 | 0.9300 |
| N1—C8 | 1.380 (2) | O2—C12 | 1.210 (2) |
| C2—C3 | 1.362 (2) | C10—H10A | 0.9700 |
| C2—C1 | 1.419 (3) | C10—H10B | 0.9700 |
| C2—C10 | 1.510 (2) | C15—C16 | 1.377 (3) |
| C3—C9 | 1.411 (2) | C15—H15 | 0.9300 |
| C3—H3 | 0.9300 | C12—C11 | 1.548 (3) |
| N2—C11 | 1.366 (2) | C7—C6 | 1.358 (3) |
| N2—C14 | 1.416 (2) | C7—H7 | 0.9300 |
| N2—C10 | 1.457 (2) | C5—C6 | 1.390 (3) |
| C13—C15 | 1.381 (2) | C5—H5 | 0.9300 |
| C13—C14 | 1.392 (2) | C6—H6 | 0.9300 |
| C13—C12 | 1.451 (3) | C18—C17 | 1.391 (3) |
| C14—C18 | 1.376 (2) | C18—H18 | 0.9300 |
| C8—C9 | 1.407 (2) | C16—C17 | 1.381 (3) |
| C8—C7 | 1.410 (3) | C16—H16 | 0.9300 |
| O1—C11 | 1.208 (2) | C17—H17 | 0.9300 |
| C4—C5 | 1.360 (3) | ||
| C1—N1—C8 | 117.22 (16) | C8—C9—C3 | 118.02 (17) |
| C3—C2—C1 | 115.56 (17) | C8—C9—C4 | 118.98 (17) |
| C3—C2—C10 | 123.70 (16) | C3—C9—C4 | 123.00 (17) |
| C1—C2—C10 | 120.73 (16) | C16—C15—C13 | 118.58 (18) |
| C2—C3—C9 | 121.17 (17) | C16—C15—H15 | 120.7 |
| C2—C3—H3 | 119.4 | C13—C15—H15 | 120.7 |
| C9—C3—H3 | 119.4 | O2—C12—C13 | 131.09 (18) |
| C11—N2—C14 | 110.98 (15) | O2—C12—C11 | 123.28 (17) |
| C11—N2—C10 | 124.07 (15) | C13—C12—C11 | 105.62 (16) |
| C14—N2—C10 | 124.94 (15) | C6—C7—C8 | 119.8 (2) |
| C15—C13—C14 | 120.82 (16) | C6—C7—H7 | 120.1 |
| C15—C13—C12 | 131.64 (17) | C8—C7—H7 | 120.1 |
| C14—C13—C12 | 107.54 (16) | C4—C5—C6 | 120.1 (2) |
| N1—C1—C2 | 126.69 (17) | C4—C5—H5 | 119.9 |
| N1—C1—Cl1 | 115.82 (14) | C6—C5—H5 | 119.9 |
| C2—C1—Cl1 | 117.49 (15) | O1—C11—N2 | 127.74 (18) |
| C18—C14—C13 | 121.36 (17) | O1—C11—C12 | 126.75 (18) |
| C18—C14—N2 | 128.29 (17) | N2—C11—C12 | 105.50 (16) |
| C13—C14—N2 | 110.35 (15) | C7—C6—C5 | 121.4 (2) |
| N1—C8—C9 | 121.33 (17) | C7—C6—H6 | 119.3 |
| N1—C8—C7 | 119.42 (18) | C5—C6—H6 | 119.3 |
| C9—C8—C7 | 119.24 (18) | C14—C18—C17 | 116.82 (19) |
| C5—C4—C9 | 120.46 (19) | C14—C18—H18 | 121.6 |
| C5—C4—H4 | 119.8 | C17—C18—H18 | 121.6 |
| C9—C4—H4 | 119.8 | C15—C16—C17 | 120.00 (19) |
| N2—C10—C2 | 112.95 (14) | C15—C16—H16 | 120.0 |
| N2—C10—H10A | 109.0 | C17—C16—H16 | 120.0 |
| C2—C10—H10A | 109.0 | C16—C17—C18 | 122.42 (19) |
| N2—C10—H10B | 109.0 | C16—C17—H17 | 118.8 |
| C2—C10—H10B | 109.0 | C18—C17—H17 | 118.8 |
| H10A—C10—H10B | 107.8 | ||
| C1—C2—C3—C9 | 0.3 (2) | C2—C3—C9—C4 | 179.27 (16) |
| C10—C2—C3—C9 | 179.03 (16) | C5—C4—C9—C8 | 0.6 (3) |
| C8—N1—C1—C2 | −0.1 (3) | C5—C4—C9—C3 | −178.91 (17) |
| C8—N1—C1—Cl1 | −179.53 (12) | C14—C13—C15—C16 | 0.7 (3) |
| C3—C2—C1—N1 | −0.2 (3) | C12—C13—C15—C16 | 179.68 (17) |
| C10—C2—C1—N1 | −178.90 (17) | C15—C13—C12—O2 | 1.3 (3) |
| C3—C2—C1—Cl1 | 179.28 (12) | C14—C13—C12—O2 | −179.6 (2) |
| C10—C2—C1—Cl1 | 0.5 (2) | C15—C13—C12—C11 | −179.36 (18) |
| C15—C13—C14—C18 | −0.5 (3) | C14—C13—C12—C11 | −0.28 (18) |
| C12—C13—C14—C18 | −179.71 (16) | N1—C8—C7—C6 | 178.92 (17) |
| C15—C13—C14—N2 | 179.64 (15) | C9—C8—C7—C6 | −0.5 (3) |
| C12—C13—C14—N2 | 0.45 (19) | C9—C4—C5—C6 | −0.4 (3) |
| C11—N2—C14—C18 | 179.71 (17) | C14—N2—C11—O1 | 179.81 (17) |
| C10—N2—C14—C18 | −1.1 (3) | C10—N2—C11—O1 | 0.6 (3) |
| C11—N2—C14—C13 | −0.46 (19) | C14—N2—C11—C12 | 0.25 (18) |
| C10—N2—C14—C13 | 178.72 (15) | C10—N2—C11—C12 | −178.93 (15) |
| C1—N1—C8—C9 | 0.2 (3) | O2—C12—C11—O1 | −0.2 (3) |
| C1—N1—C8—C7 | −179.23 (16) | C13—C12—C11—O1 | −179.55 (17) |
| C11—N2—C10—C2 | −98.40 (18) | O2—C12—C11—N2 | 179.41 (17) |
| C14—N2—C10—C2 | 82.5 (2) | C13—C12—C11—N2 | 0.02 (18) |
| C3—C2—C10—N2 | 2.8 (2) | C8—C7—C6—C5 | 0.7 (3) |
| C1—C2—C10—N2 | −178.58 (16) | C4—C5—C6—C7 | −0.2 (3) |
| N1—C8—C9—C3 | 0.0 (3) | C13—C14—C18—C17 | 0.2 (3) |
| C7—C8—C9—C3 | 179.40 (16) | N2—C14—C18—C17 | 180.00 (16) |
| N1—C8—C9—C4 | −179.55 (15) | C13—C15—C16—C17 | −0.6 (3) |
| C7—C8—C9—C4 | −0.2 (3) | C15—C16—C17—C18 | 0.3 (3) |
| C2—C3—C9—C8 | −0.3 (2) | C14—C18—C17—C16 | −0.1 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C3—H3···N2 | 0.93 | 2.49 | 2.842 (2) | 102 |
| C17—H17···O2i | 0.93 | 2.48 | 3.367 (3) | 160 |
Symmetry codes: (i) x, −y+3/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2276).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
- Oxford Diffraction (2009). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Silaicheva, P. S., Alievb, Z. G. & Maslivetsa, A. N. (2009). Russ. J. Org. Chem.45, 126–130.
- Vine, K. L., Locke, J. M., Ranson, M., Pyne, S. G. & Bremner, J. B. (2007). J. Med. Chem.50, 5109–5117. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013966/pv2276sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013966/pv2276Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


